FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 20389

FusionGeneSummary for LTV1_ATG5

check button Fusion gene summary
Fusion gene informationFusion gene name: LTV1_ATG5
Fusion gene ID: 20389
HgeneTgene
Gene symbol

LTV1

ATG5

Gene ID

84946

9474

Gene nameLTV1 ribosome biogenesis factorautophagy related 5
SynonymsC6orf93|dJ468K18.4APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5
Cytomap

6q24.2

6q21

Type of geneprotein-codingprotein-coding
Descriptionprotein LTV1 homologLTV1 homologautophagy protein 5APG5 autophagy 5-likeATG5 autophagy related 5 homologapoptosis-specific protein
Modification date2018052320180527
UniProtAcc

Q96GA3

Q9H1Y0

Ensembl transtripts involved in fusion geneENST00000367576, ENST00000343245, 
ENST00000369070, ENST00000369076, 
ENST00000360666, ENST00000475645, 
Fusion gene scores* DoF score3 X 2 X 3=187 X 7 X 4=196
# samples 38
** MAII scorelog2(3/18*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(8/196*10)=-1.29278174922785
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: LTV1 [Title/Abstract] AND ATG5 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-E9-A248-01ALTV1chr6

144167361

+ATG5chr6

106649964

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000367576ENST00000343245LTV1chr6

144167361

+ATG5chr6

106649964

-
In-frameENST00000367576ENST00000369070LTV1chr6

144167361

+ATG5chr6

106649964

-
In-frameENST00000367576ENST00000369076LTV1chr6

144167361

+ATG5chr6

106649964

-
Frame-shiftENST00000367576ENST00000360666LTV1chr6

144167361

+ATG5chr6

106649964

-
5CDS-5UTRENST00000367576ENST00000475645LTV1chr6

144167361

+ATG5chr6

106649964

-

Top

FusionProtFeatures for LTV1_ATG5


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LTV1

Q96GA3

ATG5

Q9H1Y0

Involved in autophagic vesicle formation. Conjugationwith ATG12, through a ubiquitin-like conjugating system involvingATG7 as an E1-like activating enzyme and ATG10 as an E2-likeconjugating enzyme, is essential for its function. The ATG12-ATG5conjugate acts as an E3-like enzyme which is required forlipidation of ATG8 family proteins and their association to thevesicle membranes. Involved in mitochondrial quality control afteroxidative damage, and in subsequent cellular longevity. Plays acritical role in multiple aspects of lymphocyte development and isessential for both B and T lymphocyte survival and proliferation.Required for optimal processing and presentation of antigens forMHC II. Involved in the maintenance of axon morphology andmembrane structures, as well as in normal adipocytedifferentiation. Promotes primary ciliogenesis through removal ofOFD1 from centriolar satellites and degradation of IFT20 via theautophagic pathway. {ECO:0000250|UniProtKB:Q99J83,ECO:0000269|PubMed:12207896, ECO:0000269|PubMed:20580051,ECO:0000269|PubMed:22170153, ECO:0000269|PubMed:26812546}. May play an important role in the apoptotic process,possibly within the modified cytoskeleton. Its expression is arelatively late event in the apoptotic process, occurringdownstream of caspase activity. Plays a crucial role in IFN-gamma-induced autophagic cell death by interacting with FADD.{ECO:0000269|PubMed:15778222, ECO:0000269|PubMed:7796880}. (Microbial infection) May act as a proviral factor. Inassociation with ATG12, negatively regulates the innate antiviralimmune response by impairing the type I IFN production pathwayupon vesicular stomatitis virus (VSV) infection (PubMed:17709747).Required for the translation of incoming hepatitis C virus (HCV)RNA and, thereby, for initiation of HCV replication, but notrequired once infection is established (PubMed:19666601).{ECO:0000269|PubMed:17709747, ECO:0000269|PubMed:19666601}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneLTV1chr6:144167361chr6:106649964ENST00000367576+311418_475103476Coiled coilOntology_term=ECO:0000255
HgeneLTV1chr6:144167361chr6:106649964ENST00000367576+311137_214103476Compositional biasNote=Asp-rich
HgeneLTV1chr6:144167361chr6:106649964ENST00000367576+311330_335103476Compositional biasNote=Poly-Glu


Top

FusionGeneSequence for LTV1_ATG5


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000343245_chr6_106649964_-_188aa
MPHRKKKPFIEKKKAVSFHLVHRSQRDPLAADESAPQRVLLPTQKIDNEERRAEQRKYGVFFDDDYDYLQHLKEPSGPSELIPSSTFSAH
NRREEKEETLVIPTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHIS

>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000369070_chr6_106649964_-_188aa
MPHRKKKPFIEKKKAVSFHLVHRSQRDPLAADESAPQRVLLPTQKIDNEERRAEQRKYGVFFDDDYDYLQHLKEPSGPSELIPSSTFSAH
NRREEKEETLVIPTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHIS

>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000369076_chr6_106649964_-_188aa
MPHRKKKPFIEKKKAVSFHLVHRSQRDPLAADESAPQRVLLPTQKIDNEERRAEQRKYGVFFDDDYDYLQHLKEPSGPSELIPSSTFSAH
NRREEKEETLVIPTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHIS


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000343245_chr6_106649964_-_564nt
ATGCCTCACAGGAAGAAAAAGCCCTTTATAGAGAAGAAGAAAGCTGTGTCTTTTCACTTGGTCCACCGGAGCCAACGAGATCCTTTAGCA
GCAGATGAGAGTGCACCCCAGAGGGTTCTATTGCCCACACAAAAAATAGACAATGAAGAAAGGCGAGCAGAACAGAGGAAGTATGGAGTG
TTCTTTGATGACGACTATGACTACCTGCAGCACCTGAAGGAACCATCTGGGCCTTCAGAGCTTATTCCCTCAAGTACCTTCAGTGCACAC
AACAGGAGAGAGGAGAAAGAAGAAACGCTAGTAATTCCAACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCA
GATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAGATGGGGAAAAAAAGAATCAAGTG
ATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGT

>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000369070_chr6_106649964_-_564nt
ATGCCTCACAGGAAGAAAAAGCCCTTTATAGAGAAGAAGAAAGCTGTGTCTTTTCACTTGGTCCACCGGAGCCAACGAGATCCTTTAGCA
GCAGATGAGAGTGCACCCCAGAGGGTTCTATTGCCCACACAAAAAATAGACAATGAAGAAAGGCGAGCAGAACAGAGGAAGTATGGAGTG
TTCTTTGATGACGACTATGACTACCTGCAGCACCTGAAGGAACCATCTGGGCCTTCAGAGCTTATTCCCTCAAGTACCTTCAGTGCACAC
AACAGGAGAGAGGAGAAAGAAGAAACGCTAGTAATTCCAACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCA
GATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAGATGGGGAAAAAAAGAATCAAGTG
ATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGT

>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000369076_chr6_106649964_-_564nt
ATGCCTCACAGGAAGAAAAAGCCCTTTATAGAGAAGAAGAAAGCTGTGTCTTTTCACTTGGTCCACCGGAGCCAACGAGATCCTTTAGCA
GCAGATGAGAGTGCACCCCAGAGGGTTCTATTGCCCACACAAAAAATAGACAATGAAGAAAGGCGAGCAGAACAGAGGAAGTATGGAGTG
TTCTTTGATGACGACTATGACTACCTGCAGCACCTGAAGGAACCATCTGGGCCTTCAGAGCTTATTCCCTCAAGTACCTTCAGTGCACAC
AACAGGAGAGAGGAGAAAGAAGAAACGCTAGTAATTCCAACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCA
GATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAGATGGGGAAAAAAAGAATCAAGTG
ATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGT


* Fusion transcript sequences (Full-length transcript).
>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000343245_chr6_106649964_-_2762nt
TTATCGCCGGGTCCTGGGGCTGCACGTGTGGTGAGGCCTACAGAAGCGGCCTTCAGCTGGACCTTGGTCTCCCCGCCGGACTTCGAGGGT
GTCATCGCCGCCCCTGTTGGGGGTGAGCGCCGCGCGGCTGCAGCATGCCTCACAGGAAGAAAAAGCCCTTTATAGAGAAGAAGAAAGCTG
TGTCTTTTCACTTGGTCCACCGGAGCCAACGAGATCCTTTAGCAGCAGATGAGAGTGCACCCCAGAGGGTTCTATTGCCCACACAAAAAA
TAGACAATGAAGAAAGGCGAGCAGAACAGAGGAAGTATGGAGTGTTCTTTGATGACGACTATGACTACCTGCAGCACCTGAAGGAACCAT
CTGGGCCTTCAGAGCTTATTCCCTCAAGTACCTTCAGTGCACACAACAGGAGAGAGGAGAAAGAAGAAACGCTAGTAATTCCAACAACGA
CTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTC
CTTCTGCTATTGATCCTGAAGATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGC
TGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGTATCATCCCACAGCCAACAGATTGAAGGATCAACTATTTGCCTGAAC
AGAATCATCCTTAAATGGGATTTATCAGAGCATGTCACCCTTTTGCTTCAATCAGGTTTGGTGGAGGCAACCTGACCAGAAACACTTCGC
TGCTGCAAGCCAGACAGGAAAAAGATTCCATGTCAGATAAGGCAACTGGGCTGGTCTTACTTTGCATCACCTCTGCTTTCCTCCACTGCC
ATCATTAAACCTCAGCTGTGACATGAAAGACTTACCGGACCACTGAAGGTCTTCTGTAAAATATAATGAAGCTGAAACCTTTGGCCTAAG
AAGAAAATGGAAGTATGTGCCACTCGATTTGTATTTCTGATTAACAAATAAACAGGGGTATTTCCTAAGGTGACCATGGTTGAACTTTAG
CTCATGAAAGTGGAAACATTGGTTTAATTTTCAAGAGAATTAAGAAAGTAAAAGAGAAATTCTGTTATCAATAACTTGCAAGTAATTTTT
TGTAAAAGATTGAATTACAGTAAACCCATCTTTCCTTAACGAAAATTTCCTATGTTTACAGTCTGTCTATTGGTATGCAATCTTGTAACT
TTGATAATGAACAGTGAGAGATTTTTAAATAAAGCCTCTAAATATGTTTTGTCATTTAATAACATACAGTTTTGTCACTTTTCAAGTACT
TTCTGACTCACATACAGTAGATCACTTTTTACTCTGTGTTACCATTTTGACTGGTCGTCATTGGCATGGGGTGGATATAGGGCATAGGAT
TACTTGTCTCAGAAGCTGTCATAGAATTTCTTGCTGCCAATTAAAAAACCTGTGTTCTTTACACACTACACGTATAAATATTGTAACTGT
TCATCTTTGTTGTTTTATCACTGTAAGCCTGTCAAATCATAGTATCCTAAGCATCTGTAAATGCTAATTTTGCATTTTTGGAAAAACCCA
TTCCTTCCAAGCTAGTGTTTTTCATTGGCTCCAGGTCTAATTTTTCACTGTGGTCCCTGGCAGCCAGTCTTTTGAAGTTTAAAGATTACC
TGTCTCTTGACTGCAGTACCTTTTCTTTAATTTTTACCAAAAATATCCAGAGGTTACTGGAGTTCTTATTCAATATAAGGAAAGTTTGCT
GCACTTTATTACCAAGCCTCTGGGATTTTACCAGTCAAACATATTTGTGCATTACATTTCATTTCTTGTGAGCTAGCTGGCTGTCCATAT
TGAATGTTGACCCATTTGAGTACGCTAAAAGGCTTACAGTATCAGACACGATCATGGTTTTAGATCCCATAATAAAAATGAATGTTTTTC
TTATAAAAAATTATACAAATGCTGAAGTGAGATTCTACTATTGTTCATTGCTTCCTTTTCTTTTTCCTTTTGCGATTTTCACTGATTAAT
AGCACATTTCTTCACAAAATTAGATAAAGTTGGTCAAAGACCAGATATTCTGGAATGGAAATTGTAAAGCTTAATCAAAAAGAATAGCCA
GTACAGCATACAATCTCAGAAACTTAGAAGCAAGTAGAAAATAATTGGTTGATGTAAACGAAAGTGCCATTTTAGTAAAGGCAGGAAAAA
AATAGCAATATTTGAGTTATGTAAGGATAAAAAATCCACTGACTTGTATTTTTGCACAAGAGGCTGGTCTGAATATGATTGTTCACATTA
AGAGTGTTTATTCGTCGGTTCATTTTGGGGATTTTCCCCCTTGATGTTTTGACAGATTGAAGTGAGCTTTAGTGAGCAAAAGGATCAGAA
TGCAGGGAACACTAAGCTGTGATGAAGAAAGTGTGGTAAAAAGCCAGAGTAGTTTTATACAGACAAAACCAGTGTCAGGCCTTTGCAGTA
GGCTTGAGTGAACTTCTGATCTAGATTTGAAAGTAAATTTTATGAAGACATTGCCCATTTTTACTTCCTCATTCATTATTGTACCAGCAT
CATAGCTTTATTACTCTAATCCCAGGTAAGTCAAGCCTACAATGCCCTAGAGGAAGAGTAAAACCAGAAATTCATGCTGGCTTAAATAAT

>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000369070_chr6_106649964_-_2762nt
TTATCGCCGGGTCCTGGGGCTGCACGTGTGGTGAGGCCTACAGAAGCGGCCTTCAGCTGGACCTTGGTCTCCCCGCCGGACTTCGAGGGT
GTCATCGCCGCCCCTGTTGGGGGTGAGCGCCGCGCGGCTGCAGCATGCCTCACAGGAAGAAAAAGCCCTTTATAGAGAAGAAGAAAGCTG
TGTCTTTTCACTTGGTCCACCGGAGCCAACGAGATCCTTTAGCAGCAGATGAGAGTGCACCCCAGAGGGTTCTATTGCCCACACAAAAAA
TAGACAATGAAGAAAGGCGAGCAGAACAGAGGAAGTATGGAGTGTTCTTTGATGACGACTATGACTACCTGCAGCACCTGAAGGAACCAT
CTGGGCCTTCAGAGCTTATTCCCTCAAGTACCTTCAGTGCACACAACAGGAGAGAGGAGAAAGAAGAAACGCTAGTAATTCCAACAACGA
CTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTC
CTTCTGCTATTGATCCTGAAGATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGC
TGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGTATCATCCCACAGCCAACAGATTGAAGGATCAACTATTTGCCTGAAC
AGAATCATCCTTAAATGGGATTTATCAGAGCATGTCACCCTTTTGCTTCAATCAGGTTTGGTGGAGGCAACCTGACCAGAAACACTTCGC
TGCTGCAAGCCAGACAGGAAAAAGATTCCATGTCAGATAAGGCAACTGGGCTGGTCTTACTTTGCATCACCTCTGCTTTCCTCCACTGCC
ATCATTAAACCTCAGCTGTGACATGAAAGACTTACCGGACCACTGAAGGTCTTCTGTAAAATATAATGAAGCTGAAACCTTTGGCCTAAG
AAGAAAATGGAAGTATGTGCCACTCGATTTGTATTTCTGATTAACAAATAAACAGGGGTATTTCCTAAGGTGACCATGGTTGAACTTTAG
CTCATGAAAGTGGAAACATTGGTTTAATTTTCAAGAGAATTAAGAAAGTAAAAGAGAAATTCTGTTATCAATAACTTGCAAGTAATTTTT
TGTAAAAGATTGAATTACAGTAAACCCATCTTTCCTTAACGAAAATTTCCTATGTTTACAGTCTGTCTATTGGTATGCAATCTTGTAACT
TTGATAATGAACAGTGAGAGATTTTTAAATAAAGCCTCTAAATATGTTTTGTCATTTAATAACATACAGTTTTGTCACTTTTCAAGTACT
TTCTGACTCACATACAGTAGATCACTTTTTACTCTGTGTTACCATTTTGACTGGTCGTCATTGGCATGGGGTGGATATAGGGCATAGGAT
TACTTGTCTCAGAAGCTGTCATAGAATTTCTTGCTGCCAATTAAAAAACCTGTGTTCTTTACACACTACACGTATAAATATTGTAACTGT
TCATCTTTGTTGTTTTATCACTGTAAGCCTGTCAAATCATAGTATCCTAAGCATCTGTAAATGCTAATTTTGCATTTTTGGAAAAACCCA
TTCCTTCCAAGCTAGTGTTTTTCATTGGCTCCAGGTCTAATTTTTCACTGTGGTCCCTGGCAGCCAGTCTTTTGAAGTTTAAAGATTACC
TGTCTCTTGACTGCAGTACCTTTTCTTTAATTTTTACCAAAAATATCCAGAGGTTACTGGAGTTCTTATTCAATATAAGGAAAGTTTGCT
GCACTTTATTACCAAGCCTCTGGGATTTTACCAGTCAAACATATTTGTGCATTACATTTCATTTCTTGTGAGCTAGCTGGCTGTCCATAT
TGAATGTTGACCCATTTGAGTACGCTAAAAGGCTTACAGTATCAGACACGATCATGGTTTTAGATCCCATAATAAAAATGAATGTTTTTC
TTATAAAAAATTATACAAATGCTGAAGTGAGATTCTACTATTGTTCATTGCTTCCTTTTCTTTTTCCTTTTGCGATTTTCACTGATTAAT
AGCACATTTCTTCACAAAATTAGATAAAGTTGGTCAAAGACCAGATATTCTGGAATGGAAATTGTAAAGCTTAATCAAAAAGAATAGCCA
GTACAGCATACAATCTCAGAAACTTAGAAGCAAGTAGAAAATAATTGGTTGATGTAAACGAAAGTGCCATTTTAGTAAAGGCAGGAAAAA
AATAGCAATATTTGAGTTATGTAAGGATAAAAAATCCACTGACTTGTATTTTTGCACAAGAGGCTGGTCTGAATATGATTGTTCACATTA
AGAGTGTTTATTCGTCGGTTCATTTTGGGGATTTTCCCCCTTGATGTTTTGACAGATTGAAGTGAGCTTTAGTGAGCAAAAGGATCAGAA
TGCAGGGAACACTAAGCTGTGATGAAGAAAGTGTGGTAAAAAGCCAGAGTAGTTTTATACAGACAAAACCAGTGTCAGGCCTTTGCAGTA
GGCTTGAGTGAACTTCTGATCTAGATTTGAAAGTAAATTTTATGAAGACATTGCCCATTTTTACTTCCTCATTCATTATTGTACCAGCAT
CATAGCTTTATTACTCTAATCCCAGGTAAGTCAAGCCTACAATGCCCTAGAGGAAGAGTAAAACCAGAAATTCATGCTGGCTTAAATAAT

>In-frame_LTV1_ENST00000367576_chr6_144167361_+_ATG5_ENST00000369076_chr6_106649964_-_2762nt
TTATCGCCGGGTCCTGGGGCTGCACGTGTGGTGAGGCCTACAGAAGCGGCCTTCAGCTGGACCTTGGTCTCCCCGCCGGACTTCGAGGGT
GTCATCGCCGCCCCTGTTGGGGGTGAGCGCCGCGCGGCTGCAGCATGCCTCACAGGAAGAAAAAGCCCTTTATAGAGAAGAAGAAAGCTG
TGTCTTTTCACTTGGTCCACCGGAGCCAACGAGATCCTTTAGCAGCAGATGAGAGTGCACCCCAGAGGGTTCTATTGCCCACACAAAAAA
TAGACAATGAAGAAAGGCGAGCAGAACAGAGGAAGTATGGAGTGTTCTTTGATGACGACTATGACTACCTGCAGCACCTGAAGGAACCAT
CTGGGCCTTCAGAGCTTATTCCCTCAAGTACCTTCAGTGCACACAACAGGAGAGAGGAGAAAGAAGAAACGCTAGTAATTCCAACAACGA
CTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTC
CTTCTGCTATTGATCCTGAAGATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGC
TGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGTATCATCCCACAGCCAACAGATTGAAGGATCAACTATTTGCCTGAAC
AGAATCATCCTTAAATGGGATTTATCAGAGCATGTCACCCTTTTGCTTCAATCAGGTTTGGTGGAGGCAACCTGACCAGAAACACTTCGC
TGCTGCAAGCCAGACAGGAAAAAGATTCCATGTCAGATAAGGCAACTGGGCTGGTCTTACTTTGCATCACCTCTGCTTTCCTCCACTGCC
ATCATTAAACCTCAGCTGTGACATGAAAGACTTACCGGACCACTGAAGGTCTTCTGTAAAATATAATGAAGCTGAAACCTTTGGCCTAAG
AAGAAAATGGAAGTATGTGCCACTCGATTTGTATTTCTGATTAACAAATAAACAGGGGTATTTCCTAAGGTGACCATGGTTGAACTTTAG
CTCATGAAAGTGGAAACATTGGTTTAATTTTCAAGAGAATTAAGAAAGTAAAAGAGAAATTCTGTTATCAATAACTTGCAAGTAATTTTT
TGTAAAAGATTGAATTACAGTAAACCCATCTTTCCTTAACGAAAATTTCCTATGTTTACAGTCTGTCTATTGGTATGCAATCTTGTAACT
TTGATAATGAACAGTGAGAGATTTTTAAATAAAGCCTCTAAATATGTTTTGTCATTTAATAACATACAGTTTTGTCACTTTTCAAGTACT
TTCTGACTCACATACAGTAGATCACTTTTTACTCTGTGTTACCATTTTGACTGGTCGTCATTGGCATGGGGTGGATATAGGGCATAGGAT
TACTTGTCTCAGAAGCTGTCATAGAATTTCTTGCTGCCAATTAAAAAACCTGTGTTCTTTACACACTACACGTATAAATATTGTAACTGT
TCATCTTTGTTGTTTTATCACTGTAAGCCTGTCAAATCATAGTATCCTAAGCATCTGTAAATGCTAATTTTGCATTTTTGGAAAAACCCA
TTCCTTCCAAGCTAGTGTTTTTCATTGGCTCCAGGTCTAATTTTTCACTGTGGTCCCTGGCAGCCAGTCTTTTGAAGTTTAAAGATTACC
TGTCTCTTGACTGCAGTACCTTTTCTTTAATTTTTACCAAAAATATCCAGAGGTTACTGGAGTTCTTATTCAATATAAGGAAAGTTTGCT
GCACTTTATTACCAAGCCTCTGGGATTTTACCAGTCAAACATATTTGTGCATTACATTTCATTTCTTGTGAGCTAGCTGGCTGTCCATAT
TGAATGTTGACCCATTTGAGTACGCTAAAAGGCTTACAGTATCAGACACGATCATGGTTTTAGATCCCATAATAAAAATGAATGTTTTTC
TTATAAAAAATTATACAAATGCTGAAGTGAGATTCTACTATTGTTCATTGCTTCCTTTTCTTTTTCCTTTTGCGATTTTCACTGATTAAT
AGCACATTTCTTCACAAAATTAGATAAAGTTGGTCAAAGACCAGATATTCTGGAATGGAAATTGTAAAGCTTAATCAAAAAGAATAGCCA
GTACAGCATACAATCTCAGAAACTTAGAAGCAAGTAGAAAATAATTGGTTGATGTAAACGAAAGTGCCATTTTAGTAAAGGCAGGAAAAA
AATAGCAATATTTGAGTTATGTAAGGATAAAAAATCCACTGACTTGTATTTTTGCACAAGAGGCTGGTCTGAATATGATTGTTCACATTA
AGAGTGTTTATTCGTCGGTTCATTTTGGGGATTTTCCCCCTTGATGTTTTGACAGATTGAAGTGAGCTTTAGTGAGCAAAAGGATCAGAA
TGCAGGGAACACTAAGCTGTGATGAAGAAAGTGTGGTAAAAAGCCAGAGTAGTTTTATACAGACAAAACCAGTGTCAGGCCTTTGCAGTA
GGCTTGAGTGAACTTCTGATCTAGATTTGAAAGTAAATTTTATGAAGACATTGCCCATTTTTACTTCCTCATTCATTATTGTACCAGCAT
CATAGCTTTATTACTCTAATCCCAGGTAAGTCAAGCCTACAATGCCCTAGAGGAAGAGTAAAACCAGAAATTCATGCTGGCTTAAATAAT


Top

FusionGenePPI for LTV1_ATG5


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
LTV1RCN1, TUBA1B, CSNK2A1, CBX8, VHL, BYSL, FTSJ3, LIN28A, RPS2, RPSA, RPS6KB2, HNRNPA1, TSR1, NTRK1, APP, KIAA0753, CEP120, SPICE1, CEP128, CEP44, DCTN1, CEP19, POC1A, XPO1, HNRNPU, RPS14, ZBTB48, PCGF2, NOL9, ZNF324B, USH1C, TRIM25ATG5ATG12, IMPDH2, ATG16L1, ATG3, TECPR1, TKT, MAP1LC3B, MAP1LC3C, SIRT1, ELAVL1, TAB2, TAB3, WDFY3, HTT, CAV1, EXOC4, RB1CC1, FADD, WIPI2, MEOX2, VCP, KEAP1, CCHCR1, TEKT4, CAPN1, CAPN2, BCL2L1, XPO1, BCL10, SQSTM1, CALCOCO2, OPTN, BSN, IKBIP


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for LTV1_ATG5


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for LTV1_ATG5


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneATG5C0002871Anemia1CTD_human
TgeneATG5C0019209Hepatomegaly1CTD_human
TgeneATG5C0023380Lethargy1CTD_human
TgeneATG5C0024312Lymphopenia1CTD_human
TgeneATG5C0027540Necrosis1CTD_human
TgeneATG5C1262477Weight decreased1CTD_human
TgeneATG5C4277682Chemical and Drug Induced Liver Injury1CTD_human