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Fusion gene ID: 19941 |
FusionGeneSummary for LOH12CR1_CDR2L |
Fusion gene summary |
Fusion gene information | Fusion gene name: LOH12CR1_CDR2L | Fusion gene ID: 19941 | Hgene | Tgene | Gene symbol | LOH12CR1 | CDR2L | Gene ID | 118426 | 30850 |
Gene name | BLOC-1 related complex subunit 5 | cerebellar degeneration related protein 2 like | |
Synonyms | LOH12CR1|LOH1CR12 | HUMPPA | |
Cytomap | 12p13.2 | 17q25.1 | |
Type of gene | protein-coding | protein-coding | |
Description | BLOC-1-related complex subunit 5loss of heterozygosity 12 chromosomal region 1 proteinloss of heterozygosity, 12, chromosomal region 1myristoylated lysosomal proteinmyrlysin | cerebellar degeneration-related protein 2-likeparaneoplastic 62 kDa antigenparaneoplastic antigen | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q86X02 | ||
Ensembl transtripts involved in fusion gene | ENST00000542728, ENST00000314565, ENST00000298571, | ENST00000337231, | |
Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 5 X 2 X 5=50 |
# samples | 3 | 5 | |
** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/50*10)=0 | |
Context | PubMed: LOH12CR1 [Title/Abstract] AND CDR2L [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LIHC | TCGA-BC-A10T-01A | LOH12CR1 | chr12 | 12514283 | + | CDR2L | chr17 | 72995599 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000542728 | ENST00000337231 | LOH12CR1 | chr12 | 12514283 | + | CDR2L | chr17 | 72995599 | + |
In-frame | ENST00000314565 | ENST00000337231 | LOH12CR1 | chr12 | 12514283 | + | CDR2L | chr17 | 72995599 | + |
intron-3CDS | ENST00000298571 | ENST00000337231 | LOH12CR1 | chr12 | 12514283 | + | CDR2L | chr17 | 72995599 | + |
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FusionProtFeatures for LOH12CR1_CDR2L |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
LOH12CR1 | CDR2L |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >CDR2L | chr12:12514283 | chr17:72995599 | ENST00000337231 | + | 0 | 5 | 188_265 | 26 | 466 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >CDR2L | chr12:12514283 | chr17:72995599 | ENST00000337231 | + | 0 | 5 | 350_377 | 26 | 466 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >CDR2L | chr12:12514283 | chr17:72995599 | ENST00000337231 | + | 0 | 5 | 38_143 | 26 | 466 | Coiled coil | Ontology_term=ECO:0000255 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for LOH12CR1_CDR2L |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_LOH12CR1_ENST00000542728_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_488aa MTPSPAKHRAKMDDIVVVAQGSQASRNVSNDPDVIKLQEIPTFQPLLKDLHLAAELGKTLLERNKELEGSLQQMYSTNEEQVQEIEYLTK QLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQKIHGLTETIERLQAQVEELQAQVEQLRGLEQLRVLREKRERRRTIHTF PCLKELCTSPRCKDAFRLHSSSLELGPRPLEQENERLQTLVGALRSQVSQERQRKERAEREYTAVLQEYSELERQLCEMEACRLRVQELE AELLELQQMKQAKTYLLGPDDHLAEALLAPLTQAPEADDPQPGRGDDLGAQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRHAGNL TLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLRGGEEGQGEVKAGEKSLSQHVEAVDKR >In-frame_LOH12CR1_ENST00000314565_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_507aa MGSEQSSEAESRPNDLNSSVTPSPAKHRAKMDDIVVVAQGSQASRNVSNDPDVIKLQEIPTFQPLLKDLHLAAELGKTLLERNKELEGSL QQMYSTNEEQVQEIEYLTKQLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQKIHGLTETIERLQAQVEELQAQVEQLRGL EQLRVLREKRERRRTIHTFPCLKELCTSPRCKDAFRLHSSSLELGPRPLEQENERLQTLVGALRSQVSQERQRKERAEREYTAVLQEYSE LERQLCEMEACRLRVQELEAELLELQQMKQAKTYLLGPDDHLAEALLAPLTQAPEADDPQPGRGDDLGAQDGVSSPAASPGHVVRKSCSD TALNAIVAKDPASRHAGNLTLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLRGGEEGQG |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_LOH12CR1_ENST00000542728_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_1464nt ATGACTCCTTCACCAGCCAAGCATAGAGCCAAGATGGATGATATTGTGGTTGTAGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAAC GATCCCGATGTCATCAAGTTGCAAGAGATTCCAACCTTCCAGCCCCTTTTGAAAGACTTGCACCTAGCTGCGGAGCTGGGGAAGACTCTG CTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCACCAATGAGGAACAGGTGCAGGAGATCGAGTACCTAACCAAG CAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATGAGCAGCTGGACCTGACAGCCCGGGACCTGGAGCTGACCAAC CACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGCTGACGGAGACCATTGAGCGCCTCCAGGCTCAGGTGGAGGAG CTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGCTCCGGGAGAAGCGGGAACGCAGGCGTACCATCCACACCTTC CCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCCGCCTACACAGTTCCTCCCTGGAGCTGGGCCCGCGGCCCCTG GAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCCAGGTGAGCCAGGAGCGGCAGCGCAAGGAGCGGGCGGAGCGC GAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGTGCGAGATGGAGGCCTGTCGCCTGCGTGTGCAGGAGCTGGAG GCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTACTGGGTCCGGACGACCACCTGGCCGAGGCCCTGCTCGCACCC CTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACGACTTGGGCGCCCAGGACGGGGTCTCCTCACCGGCAGCCTCT CCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCATCGTGGCCAAAGACCCAGCCAGCCGGCACGCGGGCAACCTC ACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGGAGGTGGACGAGCAGTACCACGCGCTGCTGGAGAAGTACGAG GAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCGGCGTGCAGACCTCGCGCCCCATCTCCCGGGACAGCTCGTGG AGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAGAGAAGAGCCTGAGCCAGCACGTGGAGGCCGTGGACAAGCGG CTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCTCCAGGATCCAGAAGACCAAGGCTGACATCAACGCCACCAAA >In-frame_LOH12CR1_ENST00000314565_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_1521nt ATGGGCAGTGAGCAGAGCTCCGAGGCCGAGAGCCGACCCAACGATCTGAACTCCTCAGTGACTCCTTCACCAGCCAAGCATAGAGCCAAG ATGGATGATATTGTGGTTGTAGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGATGTCATCAAGTTGCAAGAGATTCCA ACCTTCCAGCCCCTTTTGAAAGACTTGCACCTAGCTGCGGAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTG CAGCAGATGTACTCCACCAATGAGGAACAGGTGCAGGAGATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAG CACGCCAAAGTCTATGAGCAGCTGGACCTGACAGCCCGGGACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAG CAGAAGATCCATGGGCTGACGGAGACCATTGAGCGCCTCCAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTG GAACAGCTGCGAGTGCTCCGGGAGAAGCGGGAACGCAGGCGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGG TGCAAGGATGCTTTCCGCCTACACAGTTCCTCCCTGGAGCTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTG GGGGCGCTGCGCTCCCAGGTGAGCCAGGAGCGGCAGCGCAAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAG CTGGAGCGCCAGCTGTGCGAGATGGAGGCCTGTCGCCTGCGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAG GCCAAGACCTACCTACTGGGTCCGGACGACCACCTGGCCGAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAG CCCGGCCGCGGGGACGACTTGGGCGCCCAGGACGGGGTCTCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGAC ACTGCGCTCAACGCCATCGTGGCCAAAGACCCAGCCAGCCGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGC ATGTCCATCCTGCGGGAGGTGGACGAGCAGTACCACGCGCTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCC GGAGTGCGGCACGCCGGCGTGCAGACCTCGCGCCCCATCTCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGT GAGGTCAAGGCAGGAGAGAAGAGCCTGAGCCAGCACGTGGAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_LOH12CR1_ENST00000542728_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_3229nt TCTGCGTCCCGGAAGGAGCGAGCTTGCGGAGCGTGAACCATGACTCCTTCACCAGCCAAGCATAGAGCCAAGATGGATGATATTGTGGTT GTAGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGATGTCATCAAGTTGCAAGAGATTCCAACCTTCCAGCCCCTTTTG AAAGACTTGCACCTAGCTGCGGAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCACC AATGAGGAACAGGTGCAGGAGATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATGAG CAGCTGGACCTGACAGCCCGGGACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGCTG ACGGAGACCATTGAGCGCCTCCAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGCTC CGGGAGAAGCGGGAACGCAGGCGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCCGC CTACACAGTTCCTCCCTGGAGCTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCCAG GTGAGCCAGGAGCGGCAGCGCAAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGTGC GAGATGGAGGCCTGTCGCCTGCGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTACTG GGTCCGGACGACCACCTGGCCGAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACGAC TTGGGCGCCCAGGACGGGGTCTCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCATC GTGGCCAAAGACCCAGCCAGCCGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGGAG GTGGACGAGCAGTACCACGCGCTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCGGC GTGCAGACCTCGCGCCCCATCTCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAGAG AAGAGCCTGAGCCAGCACGTGGAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCTCC AGGATCCAGAAGACCAAGGCTGACATCAACGCCACCAAAGTCAAGACGCACAGCAGCAAGTGACCCTTCTCCGGCCTGCAGCCTCCCCCA GGGTGGAAGCCGTGGGGTCCCTCAGGCCTGGGCGGTGCAGCTTCCAGAGAGCGAGCGCCCTTTAGCGGCCTGCCACCACAGCACGCGGCC TCCTGATCCGGAAGCACGCAGCATGTTCCCTGCTGAGCGGAGGCAGCCCACCTGTCCTGCCTCCCAGGAGCCCTTGGCCACCTCGCGCCA GCCCAAAGGCGCAGCTCTGAGTTCAAAGCCAAATGTCCCCACTACCCCAGGGATCCCCCAGCTCCCCCAGCCCCTGGCTTCCTGACCCTG CGCCTCACCCTCAGACTGGTGACCAGGCTTCTGAAAGCCATTCTGGATCAGTTGGCTTTTTTTTTTTTTTTGGTTAAGTTTGTTTTTTCT AAGAGATTTGCAATGCAAGGTCTCCTTGACCCCTTGCCACAACTGGAAACACTTGAAAGGGGACCCCAGGGCCAGCTGTTTCAGGGGTTT CCTGGACCACCCACTGCTTCTCCCCAACCCTGATGCGCTGACATTCCCTTAGCACCAGCTGTCCCACCTCCAGGGTCCTGACCAGGTCAG AGATGTCCCCTGCCATGCAGAGCAGGAAGCCTCAGCTGGGCCTGGAGTGTCCCTGCTCCAGCCCTGCCAGGGACAGGTTTCTCCCTGGAT ACTCTTGGCCCACCGCAGATCTGTAGCCAGTCAGAGGAGGAGGAGAAGGAGCCCCTCAGCAGAGTGGTGCAGTTTCGCTCAGAGCTTGTC TCCTTGGCTTCCAACCCCAGAAATGCCTGCTGGGCCTTAAGCTTTCCAGGGGCCGGGGCAGTGGGGAGCCCCCATCCCTTCACACCGCCA CCAACTAACCAAGCTTGGCCTCTGACTCCCGTCTCTGTGCTTGCCCCCATCTCAGGGACCATGATGTCTCAGTCACTCCACGCTCCCCAC AGGCCAACCCTGGCACAGGTCATGTCTGCAGCCCCCAGAATGTTCTGGACATGCACCACCAGCCGGTGGTCCCAATGTCCACCCCTGCCT CCCCTTCACTGGGGACTGGGGTTTTCGCCCCATGCTGCATCGTGTTGTATTGGGATGGGGCTGAGGAACATGCTCCCTCCCTCCCTCCCA TAAAATGCCTGCTCTTCACCTCCCACCTTTGTGGGGGGCTTTTGAGGACCCAGCTGCGTCAGGAGTTTTGCTTCAAGATGTCAGAAAGTC AAGTTCAGCTAAGAGACACCCAGGTCCCCAGCTTGCCCTGAGCAGCCCTTCAGGGCTTCTGGTTCCTTCTGCCGCCCTTCCTGAGACCTT AGAAACCAGAAGAGCCATACAGTCAGTGGAAGGCGGGGGGGCCCTGGCCTCTGCACCGGGATCCCAGTGGGAACCTTCATGCCTTATTTA TTTCTAATGGGTAAAGGGGTTTTCTTACCAAGCATCCCTGACCTCCTGGAGACACCACCTGCTTTCCGGGCGGCACTGTGATGGGAGCTG GTGGCGACTGAGTCCTTCTGTACGTGCAACTGGGAAACTTTTGTCCTTTGAGGCTAGGCAGCTCCCTGCCCTCCGTGTGTGTCTGTTATC TGGGGGAGAGGAGTGTGGAAGGGTTGGGGGAAGAGCTCCAGCCTGTCTGCTCCCCAGCTCTGTAGTGGCAGACCAGCGTCACCTTTGAAG >In-frame_LOH12CR1_ENST00000314565_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_3578nt GAGTGAAAGCGGCGCCGCCCGCCGGCCGCAGGTGCGGCAAAGCCAGTGTCATCTGCCGGTTCTCTTAGGGCTCCCGGAAAGAAGGAGGGC TAGCCGCGTGCGTTCGCGCCGCGCCTCCTTGCGTTTCTGTTCCCCAAATAGGGCCTCTCCTTCTCCCGCCGCCCAGGCCCCTGCGTGGGC TGGACGCGTCAGCCCCACACATTAGCCTCGCTGCGGCGCCCAGACTCTGCTTTGCCTCCCCGTCCCGGTCCCTGGCCCCTGCCCTGTCGC CCGCCGCCGGAGCGGTGACCGCCCGGCCCGCCGTTCTTCTGCTGCCACCGCTGTCGGCACCATGGGCAGTGAGCAGAGCTCCGAGGCCGA GAGCCGACCCAACGATCTGAACTCCTCAGTGACTCCTTCACCAGCCAAGCATAGAGCCAAGATGGATGATATTGTGGTTGTAGCTCAGGG CTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGATGTCATCAAGTTGCAAGAGATTCCAACCTTCCAGCCCCTTTTGAAAGACTTGCA CCTAGCTGCGGAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCACCAATGAGGAACA GGTGCAGGAGATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATGAGCAGCTGGACCT GACAGCCCGGGACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGCTGACGGAGACCAT TGAGCGCCTCCAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGCTCCGGGAGAAGCG GGAACGCAGGCGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCCGCCTACACAGTTC CTCCCTGGAGCTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCCAGGTGAGCCAGGA GCGGCAGCGCAAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGTGCGAGATGGAGGC CTGTCGCCTGCGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTACTGGGTCCGGACGA CCACCTGGCCGAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACGACTTGGGCGCCCA GGACGGGGTCTCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCATCGTGGCCAAAGA CCCAGCCAGCCGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGGAGGTGGACGAGCA GTACCACGCGCTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCGGCGTGCAGACCTC GCGCCCCATCTCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAGAGAAGAGCCTGAG CCAGCACGTGGAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCTCCAGGATCCAGAA GACCAAGGCTGACATCAACGCCACCAAAGTCAAGACGCACAGCAGCAAGTGACCCTTCTCCGGCCTGCAGCCTCCCCCAGGGTGGAAGCC GTGGGGTCCCTCAGGCCTGGGCGGTGCAGCTTCCAGAGAGCGAGCGCCCTTTAGCGGCCTGCCACCACAGCACGCGGCCTCCTGATCCGG AAGCACGCAGCATGTTCCCTGCTGAGCGGAGGCAGCCCACCTGTCCTGCCTCCCAGGAGCCCTTGGCCACCTCGCGCCAGCCCAAAGGCG CAGCTCTGAGTTCAAAGCCAAATGTCCCCACTACCCCAGGGATCCCCCAGCTCCCCCAGCCCCTGGCTTCCTGACCCTGCGCCTCACCCT CAGACTGGTGACCAGGCTTCTGAAAGCCATTCTGGATCAGTTGGCTTTTTTTTTTTTTTTGGTTAAGTTTGTTTTTTCTAAGAGATTTGC AATGCAAGGTCTCCTTGACCCCTTGCCACAACTGGAAACACTTGAAAGGGGACCCCAGGGCCAGCTGTTTCAGGGGTTTCCTGGACCACC CACTGCTTCTCCCCAACCCTGATGCGCTGACATTCCCTTAGCACCAGCTGTCCCACCTCCAGGGTCCTGACCAGGTCAGAGATGTCCCCT GCCATGCAGAGCAGGAAGCCTCAGCTGGGCCTGGAGTGTCCCTGCTCCAGCCCTGCCAGGGACAGGTTTCTCCCTGGATACTCTTGGCCC ACCGCAGATCTGTAGCCAGTCAGAGGAGGAGGAGAAGGAGCCCCTCAGCAGAGTGGTGCAGTTTCGCTCAGAGCTTGTCTCCTTGGCTTC CAACCCCAGAAATGCCTGCTGGGCCTTAAGCTTTCCAGGGGCCGGGGCAGTGGGGAGCCCCCATCCCTTCACACCGCCACCAACTAACCA AGCTTGGCCTCTGACTCCCGTCTCTGTGCTTGCCCCCATCTCAGGGACCATGATGTCTCAGTCACTCCACGCTCCCCACAGGCCAACCCT GGCACAGGTCATGTCTGCAGCCCCCAGAATGTTCTGGACATGCACCACCAGCCGGTGGTCCCAATGTCCACCCCTGCCTCCCCTTCACTG GGGACTGGGGTTTTCGCCCCATGCTGCATCGTGTTGTATTGGGATGGGGCTGAGGAACATGCTCCCTCCCTCCCTCCCATAAAATGCCTG CTCTTCACCTCCCACCTTTGTGGGGGGCTTTTGAGGACCCAGCTGCGTCAGGAGTTTTGCTTCAAGATGTCAGAAAGTCAAGTTCAGCTA AGAGACACCCAGGTCCCCAGCTTGCCCTGAGCAGCCCTTCAGGGCTTCTGGTTCCTTCTGCCGCCCTTCCTGAGACCTTAGAAACCAGAA GAGCCATACAGTCAGTGGAAGGCGGGGGGGCCCTGGCCTCTGCACCGGGATCCCAGTGGGAACCTTCATGCCTTATTTATTTCTAATGGG TAAAGGGGTTTTCTTACCAAGCATCCCTGACCTCCTGGAGACACCACCTGCTTTCCGGGCGGCACTGTGATGGGAGCTGGTGGCGACTGA GTCCTTCTGTACGTGCAACTGGGAAACTTTTGTCCTTTGAGGCTAGGCAGCTCCCTGCCCTCCGTGTGTGTCTGTTATCTGGGGGAGAGG AGTGTGGAAGGGTTGGGGGAAGAGCTCCAGCCTGTCTGCTCCCCAGCTCTGTAGTGGCAGACCAGCGTCACCTTTGAAGTATACGTGAGA |
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FusionGenePPI for LOH12CR1_CDR2L |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
LOH12CR1 | PUF60, FBXO25, TEX35, FGL1, C17orf59, BCAS4, TRIML2, IKBIP, STX11 | CDR2L | ELAVL1, RPSA, CDR2, BFSP2 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for LOH12CR1_CDR2L |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LOH12CR1_CDR2L |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |