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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 19941

FusionGeneSummary for LOH12CR1_CDR2L

check button Fusion gene summary
Fusion gene informationFusion gene name: LOH12CR1_CDR2L
Fusion gene ID: 19941
HgeneTgene
Gene symbol

LOH12CR1

CDR2L

Gene ID

118426

30850

Gene nameBLOC-1 related complex subunit 5cerebellar degeneration related protein 2 like
SynonymsLOH12CR1|LOH1CR12HUMPPA
Cytomap

12p13.2

17q25.1

Type of geneprotein-codingprotein-coding
DescriptionBLOC-1-related complex subunit 5loss of heterozygosity 12 chromosomal region 1 proteinloss of heterozygosity, 12, chromosomal region 1myristoylated lysosomal proteinmyrlysincerebellar degeneration-related protein 2-likeparaneoplastic 62 kDa antigenparaneoplastic antigen
Modification date2018051920180519
UniProtAcc

Q86X02

Ensembl transtripts involved in fusion geneENST00000542728, ENST00000314565, 
ENST00000298571, 
ENST00000337231, 
Fusion gene scores* DoF score3 X 2 X 3=185 X 2 X 5=50
# samples 35
** MAII scorelog2(3/18*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(5/50*10)=0
Context

PubMed: LOH12CR1 [Title/Abstract] AND CDR2L [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVLIHCTCGA-BC-A10T-01ALOH12CR1chr12

12514283

+CDR2Lchr17

72995599

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000542728ENST00000337231LOH12CR1chr12

12514283

+CDR2Lchr17

72995599

+
In-frameENST00000314565ENST00000337231LOH12CR1chr12

12514283

+CDR2Lchr17

72995599

+
intron-3CDSENST00000298571ENST00000337231LOH12CR1chr12

12514283

+CDR2Lchr17

72995599

+

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FusionProtFeatures for LOH12CR1_CDR2L


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LOH12CR1

CDR2L

Q86X02

Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneCDR2Lchr12:12514283chr17:72995599ENST00000337231+05188_26526466Coiled coilOntology_term=ECO:0000255
TgeneCDR2Lchr12:12514283chr17:72995599ENST00000337231+05350_37726466Coiled coilOntology_term=ECO:0000255
TgeneCDR2Lchr12:12514283chr17:72995599ENST00000337231+0538_14326466Coiled coilOntology_term=ECO:0000255

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for LOH12CR1_CDR2L


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_LOH12CR1_ENST00000542728_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_488aa
MTPSPAKHRAKMDDIVVVAQGSQASRNVSNDPDVIKLQEIPTFQPLLKDLHLAAELGKTLLERNKELEGSLQQMYSTNEEQVQEIEYLTK
QLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQKIHGLTETIERLQAQVEELQAQVEQLRGLEQLRVLREKRERRRTIHTF
PCLKELCTSPRCKDAFRLHSSSLELGPRPLEQENERLQTLVGALRSQVSQERQRKERAEREYTAVLQEYSELERQLCEMEACRLRVQELE
AELLELQQMKQAKTYLLGPDDHLAEALLAPLTQAPEADDPQPGRGDDLGAQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRHAGNL
TLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLRGGEEGQGEVKAGEKSLSQHVEAVDKR

>In-frame_LOH12CR1_ENST00000314565_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_507aa
MGSEQSSEAESRPNDLNSSVTPSPAKHRAKMDDIVVVAQGSQASRNVSNDPDVIKLQEIPTFQPLLKDLHLAAELGKTLLERNKELEGSL
QQMYSTNEEQVQEIEYLTKQLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQKIHGLTETIERLQAQVEELQAQVEQLRGL
EQLRVLREKRERRRTIHTFPCLKELCTSPRCKDAFRLHSSSLELGPRPLEQENERLQTLVGALRSQVSQERQRKERAEREYTAVLQEYSE
LERQLCEMEACRLRVQELEAELLELQQMKQAKTYLLGPDDHLAEALLAPLTQAPEADDPQPGRGDDLGAQDGVSSPAASPGHVVRKSCSD
TALNAIVAKDPASRHAGNLTLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLRGGEEGQG


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_LOH12CR1_ENST00000542728_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_1464nt
ATGACTCCTTCACCAGCCAAGCATAGAGCCAAGATGGATGATATTGTGGTTGTAGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAAC
GATCCCGATGTCATCAAGTTGCAAGAGATTCCAACCTTCCAGCCCCTTTTGAAAGACTTGCACCTAGCTGCGGAGCTGGGGAAGACTCTG
CTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCACCAATGAGGAACAGGTGCAGGAGATCGAGTACCTAACCAAG
CAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATGAGCAGCTGGACCTGACAGCCCGGGACCTGGAGCTGACCAAC
CACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGCTGACGGAGACCATTGAGCGCCTCCAGGCTCAGGTGGAGGAG
CTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGCTCCGGGAGAAGCGGGAACGCAGGCGTACCATCCACACCTTC
CCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCCGCCTACACAGTTCCTCCCTGGAGCTGGGCCCGCGGCCCCTG
GAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCCAGGTGAGCCAGGAGCGGCAGCGCAAGGAGCGGGCGGAGCGC
GAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGTGCGAGATGGAGGCCTGTCGCCTGCGTGTGCAGGAGCTGGAG
GCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTACTGGGTCCGGACGACCACCTGGCCGAGGCCCTGCTCGCACCC
CTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACGACTTGGGCGCCCAGGACGGGGTCTCCTCACCGGCAGCCTCT
CCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCATCGTGGCCAAAGACCCAGCCAGCCGGCACGCGGGCAACCTC
ACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGGAGGTGGACGAGCAGTACCACGCGCTGCTGGAGAAGTACGAG
GAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCGGCGTGCAGACCTCGCGCCCCATCTCCCGGGACAGCTCGTGG
AGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAGAGAAGAGCCTGAGCCAGCACGTGGAGGCCGTGGACAAGCGG
CTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCTCCAGGATCCAGAAGACCAAGGCTGACATCAACGCCACCAAA

>In-frame_LOH12CR1_ENST00000314565_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_1521nt
ATGGGCAGTGAGCAGAGCTCCGAGGCCGAGAGCCGACCCAACGATCTGAACTCCTCAGTGACTCCTTCACCAGCCAAGCATAGAGCCAAG
ATGGATGATATTGTGGTTGTAGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGATGTCATCAAGTTGCAAGAGATTCCA
ACCTTCCAGCCCCTTTTGAAAGACTTGCACCTAGCTGCGGAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTG
CAGCAGATGTACTCCACCAATGAGGAACAGGTGCAGGAGATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAG
CACGCCAAAGTCTATGAGCAGCTGGACCTGACAGCCCGGGACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAG
CAGAAGATCCATGGGCTGACGGAGACCATTGAGCGCCTCCAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTG
GAACAGCTGCGAGTGCTCCGGGAGAAGCGGGAACGCAGGCGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGG
TGCAAGGATGCTTTCCGCCTACACAGTTCCTCCCTGGAGCTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTG
GGGGCGCTGCGCTCCCAGGTGAGCCAGGAGCGGCAGCGCAAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAG
CTGGAGCGCCAGCTGTGCGAGATGGAGGCCTGTCGCCTGCGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAG
GCCAAGACCTACCTACTGGGTCCGGACGACCACCTGGCCGAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAG
CCCGGCCGCGGGGACGACTTGGGCGCCCAGGACGGGGTCTCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGAC
ACTGCGCTCAACGCCATCGTGGCCAAAGACCCAGCCAGCCGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGC
ATGTCCATCCTGCGGGAGGTGGACGAGCAGTACCACGCGCTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCC
GGAGTGCGGCACGCCGGCGTGCAGACCTCGCGCCCCATCTCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGT
GAGGTCAAGGCAGGAGAGAAGAGCCTGAGCCAGCACGTGGAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTC


* Fusion transcript sequences (Full-length transcript).
>In-frame_LOH12CR1_ENST00000542728_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_3229nt
TCTGCGTCCCGGAAGGAGCGAGCTTGCGGAGCGTGAACCATGACTCCTTCACCAGCCAAGCATAGAGCCAAGATGGATGATATTGTGGTT
GTAGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGATGTCATCAAGTTGCAAGAGATTCCAACCTTCCAGCCCCTTTTG
AAAGACTTGCACCTAGCTGCGGAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCACC
AATGAGGAACAGGTGCAGGAGATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATGAG
CAGCTGGACCTGACAGCCCGGGACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGCTG
ACGGAGACCATTGAGCGCCTCCAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGCTC
CGGGAGAAGCGGGAACGCAGGCGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCCGC
CTACACAGTTCCTCCCTGGAGCTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCCAG
GTGAGCCAGGAGCGGCAGCGCAAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGTGC
GAGATGGAGGCCTGTCGCCTGCGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTACTG
GGTCCGGACGACCACCTGGCCGAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACGAC
TTGGGCGCCCAGGACGGGGTCTCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCATC
GTGGCCAAAGACCCAGCCAGCCGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGGAG
GTGGACGAGCAGTACCACGCGCTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCGGC
GTGCAGACCTCGCGCCCCATCTCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAGAG
AAGAGCCTGAGCCAGCACGTGGAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCTCC
AGGATCCAGAAGACCAAGGCTGACATCAACGCCACCAAAGTCAAGACGCACAGCAGCAAGTGACCCTTCTCCGGCCTGCAGCCTCCCCCA
GGGTGGAAGCCGTGGGGTCCCTCAGGCCTGGGCGGTGCAGCTTCCAGAGAGCGAGCGCCCTTTAGCGGCCTGCCACCACAGCACGCGGCC
TCCTGATCCGGAAGCACGCAGCATGTTCCCTGCTGAGCGGAGGCAGCCCACCTGTCCTGCCTCCCAGGAGCCCTTGGCCACCTCGCGCCA
GCCCAAAGGCGCAGCTCTGAGTTCAAAGCCAAATGTCCCCACTACCCCAGGGATCCCCCAGCTCCCCCAGCCCCTGGCTTCCTGACCCTG
CGCCTCACCCTCAGACTGGTGACCAGGCTTCTGAAAGCCATTCTGGATCAGTTGGCTTTTTTTTTTTTTTTGGTTAAGTTTGTTTTTTCT
AAGAGATTTGCAATGCAAGGTCTCCTTGACCCCTTGCCACAACTGGAAACACTTGAAAGGGGACCCCAGGGCCAGCTGTTTCAGGGGTTT
CCTGGACCACCCACTGCTTCTCCCCAACCCTGATGCGCTGACATTCCCTTAGCACCAGCTGTCCCACCTCCAGGGTCCTGACCAGGTCAG
AGATGTCCCCTGCCATGCAGAGCAGGAAGCCTCAGCTGGGCCTGGAGTGTCCCTGCTCCAGCCCTGCCAGGGACAGGTTTCTCCCTGGAT
ACTCTTGGCCCACCGCAGATCTGTAGCCAGTCAGAGGAGGAGGAGAAGGAGCCCCTCAGCAGAGTGGTGCAGTTTCGCTCAGAGCTTGTC
TCCTTGGCTTCCAACCCCAGAAATGCCTGCTGGGCCTTAAGCTTTCCAGGGGCCGGGGCAGTGGGGAGCCCCCATCCCTTCACACCGCCA
CCAACTAACCAAGCTTGGCCTCTGACTCCCGTCTCTGTGCTTGCCCCCATCTCAGGGACCATGATGTCTCAGTCACTCCACGCTCCCCAC
AGGCCAACCCTGGCACAGGTCATGTCTGCAGCCCCCAGAATGTTCTGGACATGCACCACCAGCCGGTGGTCCCAATGTCCACCCCTGCCT
CCCCTTCACTGGGGACTGGGGTTTTCGCCCCATGCTGCATCGTGTTGTATTGGGATGGGGCTGAGGAACATGCTCCCTCCCTCCCTCCCA
TAAAATGCCTGCTCTTCACCTCCCACCTTTGTGGGGGGCTTTTGAGGACCCAGCTGCGTCAGGAGTTTTGCTTCAAGATGTCAGAAAGTC
AAGTTCAGCTAAGAGACACCCAGGTCCCCAGCTTGCCCTGAGCAGCCCTTCAGGGCTTCTGGTTCCTTCTGCCGCCCTTCCTGAGACCTT
AGAAACCAGAAGAGCCATACAGTCAGTGGAAGGCGGGGGGGCCCTGGCCTCTGCACCGGGATCCCAGTGGGAACCTTCATGCCTTATTTA
TTTCTAATGGGTAAAGGGGTTTTCTTACCAAGCATCCCTGACCTCCTGGAGACACCACCTGCTTTCCGGGCGGCACTGTGATGGGAGCTG
GTGGCGACTGAGTCCTTCTGTACGTGCAACTGGGAAACTTTTGTCCTTTGAGGCTAGGCAGCTCCCTGCCCTCCGTGTGTGTCTGTTATC
TGGGGGAGAGGAGTGTGGAAGGGTTGGGGGAAGAGCTCCAGCCTGTCTGCTCCCCAGCTCTGTAGTGGCAGACCAGCGTCACCTTTGAAG

>In-frame_LOH12CR1_ENST00000314565_chr12_12514283_+_CDR2L_ENST00000337231_chr17_72995599_+_3578nt
GAGTGAAAGCGGCGCCGCCCGCCGGCCGCAGGTGCGGCAAAGCCAGTGTCATCTGCCGGTTCTCTTAGGGCTCCCGGAAAGAAGGAGGGC
TAGCCGCGTGCGTTCGCGCCGCGCCTCCTTGCGTTTCTGTTCCCCAAATAGGGCCTCTCCTTCTCCCGCCGCCCAGGCCCCTGCGTGGGC
TGGACGCGTCAGCCCCACACATTAGCCTCGCTGCGGCGCCCAGACTCTGCTTTGCCTCCCCGTCCCGGTCCCTGGCCCCTGCCCTGTCGC
CCGCCGCCGGAGCGGTGACCGCCCGGCCCGCCGTTCTTCTGCTGCCACCGCTGTCGGCACCATGGGCAGTGAGCAGAGCTCCGAGGCCGA
GAGCCGACCCAACGATCTGAACTCCTCAGTGACTCCTTCACCAGCCAAGCATAGAGCCAAGATGGATGATATTGTGGTTGTAGCTCAGGG
CTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGATGTCATCAAGTTGCAAGAGATTCCAACCTTCCAGCCCCTTTTGAAAGACTTGCA
CCTAGCTGCGGAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCACCAATGAGGAACA
GGTGCAGGAGATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATGAGCAGCTGGACCT
GACAGCCCGGGACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGCTGACGGAGACCAT
TGAGCGCCTCCAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGCTCCGGGAGAAGCG
GGAACGCAGGCGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCCGCCTACACAGTTC
CTCCCTGGAGCTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCCAGGTGAGCCAGGA
GCGGCAGCGCAAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGTGCGAGATGGAGGC
CTGTCGCCTGCGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTACTGGGTCCGGACGA
CCACCTGGCCGAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACGACTTGGGCGCCCA
GGACGGGGTCTCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCATCGTGGCCAAAGA
CCCAGCCAGCCGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGGAGGTGGACGAGCA
GTACCACGCGCTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCGGCGTGCAGACCTC
GCGCCCCATCTCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAGAGAAGAGCCTGAG
CCAGCACGTGGAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCTCCAGGATCCAGAA
GACCAAGGCTGACATCAACGCCACCAAAGTCAAGACGCACAGCAGCAAGTGACCCTTCTCCGGCCTGCAGCCTCCCCCAGGGTGGAAGCC
GTGGGGTCCCTCAGGCCTGGGCGGTGCAGCTTCCAGAGAGCGAGCGCCCTTTAGCGGCCTGCCACCACAGCACGCGGCCTCCTGATCCGG
AAGCACGCAGCATGTTCCCTGCTGAGCGGAGGCAGCCCACCTGTCCTGCCTCCCAGGAGCCCTTGGCCACCTCGCGCCAGCCCAAAGGCG
CAGCTCTGAGTTCAAAGCCAAATGTCCCCACTACCCCAGGGATCCCCCAGCTCCCCCAGCCCCTGGCTTCCTGACCCTGCGCCTCACCCT
CAGACTGGTGACCAGGCTTCTGAAAGCCATTCTGGATCAGTTGGCTTTTTTTTTTTTTTTGGTTAAGTTTGTTTTTTCTAAGAGATTTGC
AATGCAAGGTCTCCTTGACCCCTTGCCACAACTGGAAACACTTGAAAGGGGACCCCAGGGCCAGCTGTTTCAGGGGTTTCCTGGACCACC
CACTGCTTCTCCCCAACCCTGATGCGCTGACATTCCCTTAGCACCAGCTGTCCCACCTCCAGGGTCCTGACCAGGTCAGAGATGTCCCCT
GCCATGCAGAGCAGGAAGCCTCAGCTGGGCCTGGAGTGTCCCTGCTCCAGCCCTGCCAGGGACAGGTTTCTCCCTGGATACTCTTGGCCC
ACCGCAGATCTGTAGCCAGTCAGAGGAGGAGGAGAAGGAGCCCCTCAGCAGAGTGGTGCAGTTTCGCTCAGAGCTTGTCTCCTTGGCTTC
CAACCCCAGAAATGCCTGCTGGGCCTTAAGCTTTCCAGGGGCCGGGGCAGTGGGGAGCCCCCATCCCTTCACACCGCCACCAACTAACCA
AGCTTGGCCTCTGACTCCCGTCTCTGTGCTTGCCCCCATCTCAGGGACCATGATGTCTCAGTCACTCCACGCTCCCCACAGGCCAACCCT
GGCACAGGTCATGTCTGCAGCCCCCAGAATGTTCTGGACATGCACCACCAGCCGGTGGTCCCAATGTCCACCCCTGCCTCCCCTTCACTG
GGGACTGGGGTTTTCGCCCCATGCTGCATCGTGTTGTATTGGGATGGGGCTGAGGAACATGCTCCCTCCCTCCCTCCCATAAAATGCCTG
CTCTTCACCTCCCACCTTTGTGGGGGGCTTTTGAGGACCCAGCTGCGTCAGGAGTTTTGCTTCAAGATGTCAGAAAGTCAAGTTCAGCTA
AGAGACACCCAGGTCCCCAGCTTGCCCTGAGCAGCCCTTCAGGGCTTCTGGTTCCTTCTGCCGCCCTTCCTGAGACCTTAGAAACCAGAA
GAGCCATACAGTCAGTGGAAGGCGGGGGGGCCCTGGCCTCTGCACCGGGATCCCAGTGGGAACCTTCATGCCTTATTTATTTCTAATGGG
TAAAGGGGTTTTCTTACCAAGCATCCCTGACCTCCTGGAGACACCACCTGCTTTCCGGGCGGCACTGTGATGGGAGCTGGTGGCGACTGA
GTCCTTCTGTACGTGCAACTGGGAAACTTTTGTCCTTTGAGGCTAGGCAGCTCCCTGCCCTCCGTGTGTGTCTGTTATCTGGGGGAGAGG
AGTGTGGAAGGGTTGGGGGAAGAGCTCCAGCCTGTCTGCTCCCCAGCTCTGTAGTGGCAGACCAGCGTCACCTTTGAAGTATACGTGAGA


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FusionGenePPI for LOH12CR1_CDR2L


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
LOH12CR1PUF60, FBXO25, TEX35, FGL1, C17orf59, BCAS4, TRIML2, IKBIP, STX11CDR2LELAVL1, RPSA, CDR2, BFSP2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for LOH12CR1_CDR2L


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LOH12CR1_CDR2L


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource