|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 19804 |
FusionGeneSummary for LIPA_CCDC90B |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: LIPA_CCDC90B | Fusion gene ID: 19804 | Hgene | Tgene | Gene symbol | LIPA | CCDC90B | Gene ID | 10648 | 60492 |
| Gene name | secretoglobin family 1D member 1 | coiled-coil domain containing 90B | |
| Synonyms | LIPA|LPHA|LPNA | MDS011|MDS025 | |
| Cytomap | 11q12.3 | 11q14.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | secretoglobin family 1D member 1lipophilin A (uteroglobin family member)lipophilin-Aprostatein-like lipophilin A | coiled-coil domain-containing protein 90B, mitochondrial | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | P38571 | Q9GZT6 | |
| Ensembl transtripts involved in fusion gene | ENST00000371837, ENST00000487618, ENST00000336233, ENST00000456827, | ENST00000529689, ENST00000455220, ENST00000525504, ENST00000525503, ENST00000529611, ENST00000529073, | |
| Fusion gene scores | * DoF score | 8 X 9 X 2=144 | 4 X 4 X 3=48 |
| # samples | 9 | 4 | |
| ** MAII score | log2(9/144*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: LIPA [Title/Abstract] AND CCDC90B [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BP304339 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-5UTR | ENST00000371837 | ENST00000529689 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000371837 | ENST00000455220 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000371837 | ENST00000525504 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000371837 | ENST00000525503 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000371837 | ENST00000529611 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000371837 | ENST00000529073 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000487618 | ENST00000529689 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000487618 | ENST00000455220 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000487618 | ENST00000525504 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000487618 | ENST00000525503 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000487618 | ENST00000529611 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000487618 | ENST00000529073 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000336233 | ENST00000529689 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000336233 | ENST00000455220 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000336233 | ENST00000525504 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000336233 | ENST00000525503 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000336233 | ENST00000529611 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000336233 | ENST00000529073 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000456827 | ENST00000529689 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000456827 | ENST00000455220 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000456827 | ENST00000525504 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000456827 | ENST00000525503 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-5UTR | ENST00000456827 | ENST00000529611 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
| intron-intron | ENST00000456827 | ENST00000529073 | LIPA | chr10 | 90974470 | - | CCDC90B | chr11 | 82997031 | - |
Top |
FusionProtFeatures for LIPA_CCDC90B |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| LIPA | CCDC90B |
| Crucial for the intracellular hydrolysis of cholesterylesters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important inmediating the effect of LDL (low density lipoprotein) uptake onsuppression of hydroxymethylglutaryl-CoA reductase and activationof endogenous cellular cholesteryl ester formation. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for LIPA_CCDC90B |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for LIPA_CCDC90B |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for LIPA_CCDC90B |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for LIPA_CCDC90B |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | LIPA | C0043208 | Wolman Disease | 2 | ORPHANET;UNIPROT |
| Hgene | LIPA | C0008384 | Cholesterol Ester Storage Disease | 1 | CTD_human;ORPHANET |
| Hgene | LIPA | C0220756 | Niemann-Pick Disease, Type C | 1 | CTD_human |
| Hgene | LIPA | C1956346 | Coronary Artery Disease | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|