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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 19793

FusionGeneSummary for LINC00893_IDS

check button Fusion gene summary
Fusion gene informationFusion gene name: LINC00893_IDS
Fusion gene ID: 19793
HgeneTgene
Gene symbol

LINC00893

IDS

Gene ID

100131434

3423

Gene namelong intergenic non-protein coding RNA 893iduronate 2-sulfatase
Synonyms-MPS2|SIDS
Cytomap

Xq28

Xq28

Type of genencRNAprotein-coding
Descriptiongene Widuronate 2-sulfatasealpha-L-iduronate sulfate sulfataseiduronate 2-sulfatase 14 kDa chainiduronate 2-sulfatase 42 kDa chainidursulfase
Modification date2018032920180523
UniProtAcc

P22304

Ensembl transtripts involved in fusion geneENST00000412882, ENST00000609369, 
ENST00000437981, ENST00000596412, 
ENST00000431025, ENST00000430173, 
ENST00000451969, ENST00000541582, 
ENST00000608616, ENST00000447209, 
ENST00000609161, ENST00000436708, 
ENST00000431214, ENST00000608342, 
ENST00000609314, ENST00000609651, 
ENST00000608355, 
ENST00000340855, 
ENST00000537071, ENST00000541269, 
ENST00000422081, ENST00000370441, 
ENST00000490775, ENST00000370443, 
ENST00000427113, ENST00000428056, 
Fusion gene scores* DoF score1 X 1 X 1=16 X 8 X 1=48
# samples 18
** MAII scorelog2(1/1*10)=3.32192809488736log2(8/48*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: LINC00893 [Title/Abstract] AND IDS [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1U66053LINC00893chrX

148615706

-IDSchrX

148571843

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000412882ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000412882ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000412882ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000412882ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000412882ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000412882ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000412882ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000412882ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000412882ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609369ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000437981ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000596412ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431025ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000430173ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000451969ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000541582ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608616ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000447209ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609161ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000436708ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000431214ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608342ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609314ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000609651ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000340855LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000537071LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000541269LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000422081LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000370441LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000490775LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000370443LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000427113LINC00893chrX

148615706

-IDSchrX

148571843

+
intron-intronENST00000608355ENST00000428056LINC00893chrX

148615706

-IDSchrX

148571843

+

Top

FusionProtFeatures for LINC00893_IDS


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LINC00893

IDS

P22304

Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. Required for the lysosomal degradation of heparansulfate and dermatan sulfate.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for LINC00893_IDS


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for LINC00893_IDS


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for LINC00893_IDS


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LINC00893_IDS


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneIDSC0026705Mucopolysaccharidosis II28CTD_human;UNIPROT