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Fusion gene ID: 19472 |
FusionGeneSummary for LARP4B_PAMR1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: LARP4B_PAMR1 | Fusion gene ID: 19472 | Hgene | Tgene | Gene symbol | LARP4B | PAMR1 | Gene ID | 23185 | 25891 |
| Gene name | La ribonucleoprotein domain family member 4B | peptidase domain containing associated with muscle regeneration 1 | |
| Synonyms | KIAA0217|LARP5 | DKFZP586H2123|FP938|RAMP | |
| Cytomap | 10p15.3 | 11p13 | |
| Type of gene | protein-coding | protein-coding | |
| Description | la-related protein 4BLa ribonucleoprotein domain family, member 5la-related protein 5 | inactive serine protease PAMR1peptidase domain-containing protein associated with muscle regeneration 1regeneration associated muscle proteaseregeneration-associated muscle protease homolog | |
| Modification date | 20180519 | 20180403 | |
| UniProtAcc | Q92615 | Q6UXH9 | |
| Ensembl transtripts involved in fusion gene | ENST00000316157, ENST00000469487, | ENST00000278360, ENST00000378880, ENST00000378878, ENST00000532848, ENST00000534803, | |
| Fusion gene scores | * DoF score | 7 X 6 X 5=210 | 2 X 2 X 2=8 |
| # samples | 7 | 2 | |
| ** MAII score | log2(7/210*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: LARP4B [Title/Abstract] AND PAMR1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SKCM | TCGA-FS-A4F4-06A | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000316157 | ENST00000278360 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| In-frame | ENST00000316157 | ENST00000378880 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| In-frame | ENST00000316157 | ENST00000378878 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| 5CDS-5UTR | ENST00000316157 | ENST00000532848 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| 5CDS-5UTR | ENST00000316157 | ENST00000534803 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| intron-3CDS | ENST00000469487 | ENST00000278360 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| intron-3CDS | ENST00000469487 | ENST00000378880 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| intron-3CDS | ENST00000469487 | ENST00000378878 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| intron-5UTR | ENST00000469487 | ENST00000532848 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
| intron-5UTR | ENST00000469487 | ENST00000534803 | LARP4B | chr10 | 909683 | - | PAMR1 | chr11 | 35515820 | - |
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FusionProtFeatures for LARP4B_PAMR1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| LARP4B | PAMR1 |
| Stimulates mRNA translation.{ECO:0000269|PubMed:20573744}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000278360 | - | 0 | 12 | 42_94 | 24 | 738 | Compositional bias | Note=Cys-rich |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000378880 | - | 0 | 11 | 42_94 | 24 | 721 | Compositional bias | Note=Cys-rich |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000278360 | - | 0 | 12 | 128_236 | 24 | 738 | Domain | CUB |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000278360 | - | 0 | 12 | 235_272 | 24 | 738 | Domain | EGF-like |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000278360 | - | 0 | 12 | 278_344 | 24 | 738 | Domain | Sushi 1 |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000278360 | - | 0 | 12 | 387_444 | 24 | 738 | Domain | Sushi 2 |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000278360 | - | 0 | 12 | 445_720 | 24 | 738 | Domain | Peptidase S1 |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000378880 | - | 0 | 11 | 128_236 | 24 | 721 | Domain | CUB |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000378880 | - | 0 | 11 | 235_272 | 24 | 721 | Domain | EGF-like |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000378880 | - | 0 | 11 | 278_344 | 24 | 721 | Domain | Sushi 1 |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000378880 | - | 0 | 11 | 387_444 | 24 | 721 | Domain | Sushi 2 |
| Tgene | >PAMR1 | chr10:909683 | chr11:35515820 | ENST00000378880 | - | 0 | 11 | 445_720 | 24 | 721 | Domain | Peptidase S1 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >LARP4B | chr10:909683 | chr11:35515820 | ENST00000316157 | - | 4 | 17 | 150_239 | 143 | 739 | Domain | HTH La-type RNA-binding |
| Hgene | >LARP4B | chr10:909683 | chr11:35515820 | ENST00000316157 | - | 4 | 17 | 240_307 | 143 | 739 | Domain | Note=RRM |
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FusionGeneSequence for LARP4B_PAMR1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000278360_chr11_35515820_-_857aa MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNAEVWGAPVLHLEASSAADGVSAAWEEVAGHH ADRGPQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETEYTVINEACPGAEWNIMCRECCEYDQIECVCPGKREV VGYTIPCCRNEENECDSCLIHPGCTIFENCKSCRNGSWGGTLDDFYVKGFYCAECRAGWYGGDCMRCGQVLRAPKGQILLESYPLNAHCE WTIHAKPGFVIQLRFVMLSLEFDYMCQYDYVEVRDGDNRDGQIIKRVCGNERPAPIQSIGSSLHVLFHSDGSKNFDGFHAIYEEITACSS SPCFHDGTCVLDKAGSYKCACLAGYTGQRCENLLEAGKSKIKASEDSLSVLEERNCSDPGGPVNGYQKITGGPGLINGRHAKIGTVVSFF CNNSYVLSGNEKRTCQQNGEWSGKQPICIKACREPKISDLVRRRVLPMQVQSRETPLHQLYSAAFSKQKLQSAPTKKPALPFGDLPMGYQ HLHTQLQYECISPFYRRLGSSRRTCLRTGKWSGRAPSCIPICGKIENITAPKTQGLRWPWQAAIYRRTSGVHDGSLHKGAWFLVCSGALV NERTVVVAAHCVTDLGKVTMIKTADLKVVLGKFYRDDDRDEKTIQSLQISAIILHPNYDPILLDADIAILKLLDKARISTRVQPICLAAS RDLSTSFQESHITVAGWNVLADVRSPGFKNDTLRSGVVSVVDSLLCEEQHEDHGIPVSVTDNMFCASWEPTAPSDICTAETGGIAAVSFP >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000378880_chr11_35515820_-_840aa MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNAEVWGAPVLHLEASSAADGVSAAWEEVAGHH ADRGPQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETEYTVINEACPGAEWNIMCRECCEYDQIECVCPGKREV VGYTIPCCRNEENECDSCLIHPGCTIFENCKSCRNGSWGGTLDDFYVKGFYCAECRAGWYGGDCMRCGQVLRAPKGQILLESYPLNAHCE WTIHAKPGFVIQLRFVMLSLEFDYMCQYDYVEVRDGDNRDGQIIKRVCGNERPAPIQSIGSSLHVLFHSDGSKNFDGFHAIYEEITACSS SPCFHDGTCVLDKAGSYKCACLAGYTGQRCENLLEERNCSDPGGPVNGYQKITGGPGLINGRHAKIGTVVSFFCNNSYVLSGNEKRTCQQ NGEWSGKQPICIKACREPKISDLVRRRVLPMQVQSRETPLHQLYSAAFSKQKLQSAPTKKPALPFGDLPMGYQHLHTQLQYECISPFYRR LGSSRRTCLRTGKWSGRAPSCIPICGKIENITAPKTQGLRWPWQAAIYRRTSGVHDGSLHKGAWFLVCSGALVNERTVVVAAHCVTDLGK VTMIKTADLKVVLGKFYRDDDRDEKTIQSLQISAIILHPNYDPILLDADIAILKLLDKARISTRVQPICLAASRDLSTSFQESHITVAGW NVLADVRSPGFKNDTLRSGVVSVVDSLLCEEQHEDHGIPVSVTDNMFCASWEPTAPSDICTAETGGIAAVSFPGRASPEPRWHLMGLVSW >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000378878_chr11_35515820_-_729aa MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNAEVWGAPVLHLEASSAADGVSAAWEEVAGHH ADRGPQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETEYTVINEACPGAEWNIMCRECCEYDQIECVCPGKREV VGYTIPCCRNEENECDSCLIHPGCTIFENCKSCRNGSWGGTLDDFYVKGFYCAECRAGWYGGDCMPCSSSPCFHDGTCVLDKAGSYKCAC LAGYTGQRCENLLEERNCSDPGGPVNGYQKITGGPGLINGRHAKIGTVVSFFCNNSYVLSGNEKRTCQQNGEWSGKQPICIKACREPKIS DLVRRRVLPMQVQSRETPLHQLYSAAFSKQKLQSAPTKKPALPFGDLPMGYQHLHTQLQYECISPFYRRLGSSRRTCLRTGKWSGRAPSC IPICGKIENITAPKTQGLRWPWQAAIYRRTSGVHDGSLHKGAWFLVCSGALVNERTVVVAAHCVTDLGKVTMIKTADLKVVLGKFYRDDD RDEKTIQSLQISAIILHPNYDPILLDADIAILKLLDKARISTRVQPICLAASRDLSTSFQESHITVAGWNVLADVRSPGFKNDTLRSGVV SVVDSLLCEEQHEDHGIPVSVTDNMFCASWEPTAPSDICTAETGGIAAVSFPGRASPEPRWHLMGLVSWSYDKTCSHRLSTAFTKVLPFK |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000278360_chr11_35515820_-_2571nt ATGACTTCTGATCAGGACGCTAAGGTTGTGGCTGAACCGCAGACGCAGAGAGTCCAGGAGGGCAAGGACAGCGCTCATCTGATGAATGGT CCTATATCTCAAACCACTTCTCAGACAAGTTCCATCCCACCTTTGAGTCAGGTACCAGCAACTAAGGTTTCAGAGCTGAACCCTAATGCA GAAGTGTGGGGGGCTCCTGTGTTACATCTGGAAGCAAGCAGTGCTGCTGACGGTGTGAGTGCTGCATGGGAGGAGGTGGCTGGCCACCAC GCAGACCGTGGCCCGCAGGGATCGGATGCCAATGGTGATGGTGACCAGGGCCATGAGAATGCCGCATTGCCAGACCCGCAGGAGTCGGAC CCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTCTGCCTGAAAATAGCGAGACAGAGTACACAGTCATTAATGAA GCCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAATATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTC GTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACTCCTGCCTGATCCACCCAGGTTGTACCATCTTTGAAAACTGC AAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATGTGAAGGGGTTCTACTGTGCAGAGTGCCGAGCAGGCTGGTAC GGAGGAGACTGCATGCGATGTGGCCAGGTTCTGCGAGCCCCAAAGGGTCAGATTTTGTTGGAAAGCTATCCCCTAAATGCTCACTGTGAA TGGACCATTCATGCTAAACCTGGGTTTGTCATCCAACTAAGATTTGTCATGTTGAGCCTGGAGTTTGACTACATGTGCCAGTATGACTAT GTTGAGGTTCGTGATGGAGACAACCGCGATGGCCAGATCATCAAGCGTGTCTGTGGCAACGAGCGGCCAGCTCCTATCCAGAGCATAGGA TCCTCACTCCACGTCCTCTTCCACTCCGATGGCTCCAAGAATTTTGACGGTTTCCATGCCATTTATGAGGAGATCACAGCATGCTCCTCA TCCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCTGGATCTTACAAGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGT GAAAATCTTCTGGAGGCTGGGAAGTCCAAGATCAAGGCGTCAGAAGATTCATTGTCTGTCCTTGAAGAAAGAAACTGCTCAGACCCTGGG GGCCCAGTCAATGGGTACCAGAAAATAACAGGGGGCCCTGGGCTTATCAACGGACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTT TGTAACAACTCCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGCAGAATGGAGAGTGGTCAGGGAAACAGCCCATCTGCATAAAA GCCTGCCGAGAACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTCCGATGCAGGTTCAGTCAAGGGAGACACCATTACACCAGCTA TACTCAGCGGCCTTCAGCAAGCAGAAACTGCAGAGTGCCCCTACCAAGAAGCCAGCCCTTCCCTTTGGAGATCTGCCCATGGGATACCAA CATCTGCATACCCAGCTCCAGTATGAGTGCATCTCACCCTTCTACCGCCGCCTGGGCAGCAGCAGGAGGACATGTCTGAGGACTGGGAAG TGGAGTGGGCGGGCACCATCCTGCATCCCTATCTGCGGGAAAATTGAGAACATCACTGCTCCAAAGACCCAAGGGTTGCGCTGGCCGTGG CAGGCAGCCATCTACAGGAGGACCAGCGGGGTGCATGACGGCAGCCTACACAAGGGAGCGTGGTTCCTAGTCTGCAGCGGTGCCCTGGTG AATGAGCGCACTGTGGTGGTGGCTGCCCACTGTGTTACTGACCTGGGGAAGGTCACCATGATCAAGACAGCAGACCTGAAAGTTGTTTTG GGGAAATTCTACCGGGATGATGACCGGGATGAGAAGACCATCCAGAGCCTACAGATTTCTGCTATCATTCTGCATCCCAACTATGACCCC ATCCTGCTTGATGCTGACATCGCCATCCTGAAGCTCCTAGACAAGGCCCGTATCAGCACCCGAGTCCAGCCCATCTGCCTCGCTGCCAGT CGGGATCTCAGCACTTCCTTCCAGGAGTCCCACATCACTGTGGCTGGCTGGAATGTCCTGGCAGACGTGAGGAGCCCTGGCTTCAAGAAC GACACACTGCGCTCTGGGGTGGTCAGTGTGGTGGACTCGCTGCTGTGTGAGGAGCAGCATGAGGACCATGGCATCCCAGTGAGTGTCACT GATAACATGTTCTGTGCCAGCTGGGAACCCACTGCCCCTTCTGATATCTGCACTGCAGAGACAGGAGGCATCGCGGCTGTGTCCTTCCCG GGACGAGCATCTCCTGAGCCACGCTGGCATCTGATGGGACTGGTCAGCTGGAGCTATGATAAAACATGCAGCCACAGGCTCTCCACTGCC >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000378880_chr11_35515820_-_2520nt ATGACTTCTGATCAGGACGCTAAGGTTGTGGCTGAACCGCAGACGCAGAGAGTCCAGGAGGGCAAGGACAGCGCTCATCTGATGAATGGT CCTATATCTCAAACCACTTCTCAGACAAGTTCCATCCCACCTTTGAGTCAGGTACCAGCAACTAAGGTTTCAGAGCTGAACCCTAATGCA GAAGTGTGGGGGGCTCCTGTGTTACATCTGGAAGCAAGCAGTGCTGCTGACGGTGTGAGTGCTGCATGGGAGGAGGTGGCTGGCCACCAC GCAGACCGTGGCCCGCAGGGATCGGATGCCAATGGTGATGGTGACCAGGGCCATGAGAATGCCGCATTGCCAGACCCGCAGGAGTCGGAC CCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTCTGCCTGAAAATAGCGAGACAGAGTACACAGTCATTAATGAA GCCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAATATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTC GTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACTCCTGCCTGATCCACCCAGGTTGTACCATCTTTGAAAACTGC AAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATGTGAAGGGGTTCTACTGTGCAGAGTGCCGAGCAGGCTGGTAC GGAGGAGACTGCATGCGATGTGGCCAGGTTCTGCGAGCCCCAAAGGGTCAGATTTTGTTGGAAAGCTATCCCCTAAATGCTCACTGTGAA TGGACCATTCATGCTAAACCTGGGTTTGTCATCCAACTAAGATTTGTCATGTTGAGCCTGGAGTTTGACTACATGTGCCAGTATGACTAT GTTGAGGTTCGTGATGGAGACAACCGCGATGGCCAGATCATCAAGCGTGTCTGTGGCAACGAGCGGCCAGCTCCTATCCAGAGCATAGGA TCCTCACTCCACGTCCTCTTCCACTCCGATGGCTCCAAGAATTTTGACGGTTTCCATGCCATTTATGAGGAGATCACAGCATGCTCCTCA TCCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCTGGATCTTACAAGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGT GAAAATCTCCTTGAAGAAAGAAACTGCTCAGACCCTGGGGGCCCAGTCAATGGGTACCAGAAAATAACAGGGGGCCCTGGGCTTATCAAC GGACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTTTGTAACAACTCCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGCAG AATGGAGAGTGGTCAGGGAAACAGCCCATCTGCATAAAAGCCTGCCGAGAACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTCCG ATGCAGGTTCAGTCAAGGGAGACACCATTACACCAGCTATACTCAGCGGCCTTCAGCAAGCAGAAACTGCAGAGTGCCCCTACCAAGAAG CCAGCCCTTCCCTTTGGAGATCTGCCCATGGGATACCAACATCTGCATACCCAGCTCCAGTATGAGTGCATCTCACCCTTCTACCGCCGC CTGGGCAGCAGCAGGAGGACATGTCTGAGGACTGGGAAGTGGAGTGGGCGGGCACCATCCTGCATCCCTATCTGCGGGAAAATTGAGAAC ATCACTGCTCCAAAGACCCAAGGGTTGCGCTGGCCGTGGCAGGCAGCCATCTACAGGAGGACCAGCGGGGTGCATGACGGCAGCCTACAC AAGGGAGCGTGGTTCCTAGTCTGCAGCGGTGCCCTGGTGAATGAGCGCACTGTGGTGGTGGCTGCCCACTGTGTTACTGACCTGGGGAAG GTCACCATGATCAAGACAGCAGACCTGAAAGTTGTTTTGGGGAAATTCTACCGGGATGATGACCGGGATGAGAAGACCATCCAGAGCCTA CAGATTTCTGCTATCATTCTGCATCCCAACTATGACCCCATCCTGCTTGATGCTGACATCGCCATCCTGAAGCTCCTAGACAAGGCCCGT ATCAGCACCCGAGTCCAGCCCATCTGCCTCGCTGCCAGTCGGGATCTCAGCACTTCCTTCCAGGAGTCCCACATCACTGTGGCTGGCTGG AATGTCCTGGCAGACGTGAGGAGCCCTGGCTTCAAGAACGACACACTGCGCTCTGGGGTGGTCAGTGTGGTGGACTCGCTGCTGTGTGAG GAGCAGCATGAGGACCATGGCATCCCAGTGAGTGTCACTGATAACATGTTCTGTGCCAGCTGGGAACCCACTGCCCCTTCTGATATCTGC ACTGCAGAGACAGGAGGCATCGCGGCTGTGTCCTTCCCGGGACGAGCATCTCCTGAGCCACGCTGGCATCTGATGGGACTGGTCAGCTGG AGCTATGATAAAACATGCAGCCACAGGCTCTCCACTGCCTTCACCAAGGTGCTGCCTTTTAAAGACTGGATTGAAAGAAATATGAAATGA >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000378878_chr11_35515820_-_2187nt ATGACTTCTGATCAGGACGCTAAGGTTGTGGCTGAACCGCAGACGCAGAGAGTCCAGGAGGGCAAGGACAGCGCTCATCTGATGAATGGT CCTATATCTCAAACCACTTCTCAGACAAGTTCCATCCCACCTTTGAGTCAGGTACCAGCAACTAAGGTTTCAGAGCTGAACCCTAATGCA GAAGTGTGGGGGGCTCCTGTGTTACATCTGGAAGCAAGCAGTGCTGCTGACGGTGTGAGTGCTGCATGGGAGGAGGTGGCTGGCCACCAC GCAGACCGTGGCCCGCAGGGATCGGATGCCAATGGTGATGGTGACCAGGGCCATGAGAATGCCGCATTGCCAGACCCGCAGGAGTCGGAC CCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTCTGCCTGAAAATAGCGAGACAGAGTACACAGTCATTAATGAA GCCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAATATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTC GTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACTCCTGCCTGATCCACCCAGGTTGTACCATCTTTGAAAACTGC AAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATGTGAAGGGGTTCTACTGTGCAGAGTGCCGAGCAGGCTGGTAC GGAGGAGACTGCATGCCATGCTCCTCATCCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCTGGATCTTACAAGTGTGCCTGC TTGGCAGGCTATACTGGGCAGCGCTGTGAAAATCTCCTTGAAGAAAGAAACTGCTCAGACCCTGGGGGCCCAGTCAATGGGTACCAGAAA ATAACAGGGGGCCCTGGGCTTATCAACGGACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTTTGTAACAACTCCTATGTTCTTAGT GGCAATGAGAAAAGAACTTGCCAGCAGAATGGAGAGTGGTCAGGGAAACAGCCCATCTGCATAAAAGCCTGCCGAGAACCAAAGATTTCA GACCTGGTGAGAAGGAGAGTTCTTCCGATGCAGGTTCAGTCAAGGGAGACACCATTACACCAGCTATACTCAGCGGCCTTCAGCAAGCAG AAACTGCAGAGTGCCCCTACCAAGAAGCCAGCCCTTCCCTTTGGAGATCTGCCCATGGGATACCAACATCTGCATACCCAGCTCCAGTAT GAGTGCATCTCACCCTTCTACCGCCGCCTGGGCAGCAGCAGGAGGACATGTCTGAGGACTGGGAAGTGGAGTGGGCGGGCACCATCCTGC ATCCCTATCTGCGGGAAAATTGAGAACATCACTGCTCCAAAGACCCAAGGGTTGCGCTGGCCGTGGCAGGCAGCCATCTACAGGAGGACC AGCGGGGTGCATGACGGCAGCCTACACAAGGGAGCGTGGTTCCTAGTCTGCAGCGGTGCCCTGGTGAATGAGCGCACTGTGGTGGTGGCT GCCCACTGTGTTACTGACCTGGGGAAGGTCACCATGATCAAGACAGCAGACCTGAAAGTTGTTTTGGGGAAATTCTACCGGGATGATGAC CGGGATGAGAAGACCATCCAGAGCCTACAGATTTCTGCTATCATTCTGCATCCCAACTATGACCCCATCCTGCTTGATGCTGACATCGCC ATCCTGAAGCTCCTAGACAAGGCCCGTATCAGCACCCGAGTCCAGCCCATCTGCCTCGCTGCCAGTCGGGATCTCAGCACTTCCTTCCAG GAGTCCCACATCACTGTGGCTGGCTGGAATGTCCTGGCAGACGTGAGGAGCCCTGGCTTCAAGAACGACACACTGCGCTCTGGGGTGGTC AGTGTGGTGGACTCGCTGCTGTGTGAGGAGCAGCATGAGGACCATGGCATCCCAGTGAGTGTCACTGATAACATGTTCTGTGCCAGCTGG GAACCCACTGCCCCTTCTGATATCTGCACTGCAGAGACAGGAGGCATCGCGGCTGTGTCCTTCCCGGGACGAGCATCTCCTGAGCCACGC TGGCATCTGATGGGACTGGTCAGCTGGAGCTATGATAAAACATGCAGCCACAGGCTCTCCACTGCCTTCACCAAGGTGCTGCCTTTTAAA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000278360_chr11_35515820_-_3146nt AGCATCCTGAGGTTAGCATTACACTTCTCCCAGTGGAGCCCATGACTTCTGATCAGGACGCTAAGGTTGTGGCTGAACCGCAGACGCAGA GAGTCCAGGAGGGCAAGGACAGCGCTCATCTGATGAATGGTCCTATATCTCAAACCACTTCTCAGACAAGTTCCATCCCACCTTTGAGTC AGGTACCAGCAACTAAGGTTTCAGAGCTGAACCCTAATGCAGAAGTGTGGGGGGCTCCTGTGTTACATCTGGAAGCAAGCAGTGCTGCTG ACGGTGTGAGTGCTGCATGGGAGGAGGTGGCTGGCCACCACGCAGACCGTGGCCCGCAGGGATCGGATGCCAATGGTGATGGTGACCAGG GCCATGAGAATGCCGCATTGCCAGACCCGCAGGAGTCGGACCCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTC TGCCTGAAAATAGCGAGACAGAGTACACAGTCATTAATGAAGCCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAAT ATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTCGTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACT CCTGCCTGATCCACCCAGGTTGTACCATCTTTGAAAACTGCAAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATG TGAAGGGGTTCTACTGTGCAGAGTGCCGAGCAGGCTGGTACGGAGGAGACTGCATGCGATGTGGCCAGGTTCTGCGAGCCCCAAAGGGTC AGATTTTGTTGGAAAGCTATCCCCTAAATGCTCACTGTGAATGGACCATTCATGCTAAACCTGGGTTTGTCATCCAACTAAGATTTGTCA TGTTGAGCCTGGAGTTTGACTACATGTGCCAGTATGACTATGTTGAGGTTCGTGATGGAGACAACCGCGATGGCCAGATCATCAAGCGTG TCTGTGGCAACGAGCGGCCAGCTCCTATCCAGAGCATAGGATCCTCACTCCACGTCCTCTTCCACTCCGATGGCTCCAAGAATTTTGACG GTTTCCATGCCATTTATGAGGAGATCACAGCATGCTCCTCATCCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCTGGATCTT ACAAGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGTGAAAATCTTCTGGAGGCTGGGAAGTCCAAGATCAAGGCGTCAGAAGATT CATTGTCTGTCCTTGAAGAAAGAAACTGCTCAGACCCTGGGGGCCCAGTCAATGGGTACCAGAAAATAACAGGGGGCCCTGGGCTTATCA ACGGACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTTTGTAACAACTCCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGC AGAATGGAGAGTGGTCAGGGAAACAGCCCATCTGCATAAAAGCCTGCCGAGAACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTC CGATGCAGGTTCAGTCAAGGGAGACACCATTACACCAGCTATACTCAGCGGCCTTCAGCAAGCAGAAACTGCAGAGTGCCCCTACCAAGA AGCCAGCCCTTCCCTTTGGAGATCTGCCCATGGGATACCAACATCTGCATACCCAGCTCCAGTATGAGTGCATCTCACCCTTCTACCGCC GCCTGGGCAGCAGCAGGAGGACATGTCTGAGGACTGGGAAGTGGAGTGGGCGGGCACCATCCTGCATCCCTATCTGCGGGAAAATTGAGA ACATCACTGCTCCAAAGACCCAAGGGTTGCGCTGGCCGTGGCAGGCAGCCATCTACAGGAGGACCAGCGGGGTGCATGACGGCAGCCTAC ACAAGGGAGCGTGGTTCCTAGTCTGCAGCGGTGCCCTGGTGAATGAGCGCACTGTGGTGGTGGCTGCCCACTGTGTTACTGACCTGGGGA AGGTCACCATGATCAAGACAGCAGACCTGAAAGTTGTTTTGGGGAAATTCTACCGGGATGATGACCGGGATGAGAAGACCATCCAGAGCC TACAGATTTCTGCTATCATTCTGCATCCCAACTATGACCCCATCCTGCTTGATGCTGACATCGCCATCCTGAAGCTCCTAGACAAGGCCC GTATCAGCACCCGAGTCCAGCCCATCTGCCTCGCTGCCAGTCGGGATCTCAGCACTTCCTTCCAGGAGTCCCACATCACTGTGGCTGGCT GGAATGTCCTGGCAGACGTGAGGAGCCCTGGCTTCAAGAACGACACACTGCGCTCTGGGGTGGTCAGTGTGGTGGACTCGCTGCTGTGTG AGGAGCAGCATGAGGACCATGGCATCCCAGTGAGTGTCACTGATAACATGTTCTGTGCCAGCTGGGAACCCACTGCCCCTTCTGATATCT GCACTGCAGAGACAGGAGGCATCGCGGCTGTGTCCTTCCCGGGACGAGCATCTCCTGAGCCACGCTGGCATCTGATGGGACTGGTCAGCT GGAGCTATGATAAAACATGCAGCCACAGGCTCTCCACTGCCTTCACCAAGGTGCTGCCTTTTAAAGACTGGATTGAAAGAAATATGAAAT GAACCATGCTCATGCACTCCTTGAGAAGTGTTTCTGTATATCCGTCTGTACGTGTGTCATTGCGTGAAGCAGTGTGGGCCTGAAGTGTGA TTTGGCCTGTGAACTTGGGCTGTGCCAGGGCTTCTGACTTCAGGGACAAAACTCAGTGAAGGGTGAGTAGACCTCCATTGCTGGTAGGCT GATGCCGCGTCCACTACTAGGACAGCCAATTGGAAGATGCCAGGGCTTGCAAGAAGTAAGTTTCTTCAAAGAAGACCATATACAAAACCT CTCCACTCCACTGACCTGGTGGTCTTCCCCAACTTTCAGTTATACGAATGCCATCAGCTTGACCAGGGAAGATCTGGGCTTCATGAGGCC CCTTTTGAGGCTCTCAAGTTCTAGAGAGCTGCCTGTGGGACAGCCCAGGGCAGCAGAGCTGGGATGTGGTGCATGCCTTTGTGTACATGG >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000378880_chr11_35515820_-_3095nt AGCATCCTGAGGTTAGCATTACACTTCTCCCAGTGGAGCCCATGACTTCTGATCAGGACGCTAAGGTTGTGGCTGAACCGCAGACGCAGA GAGTCCAGGAGGGCAAGGACAGCGCTCATCTGATGAATGGTCCTATATCTCAAACCACTTCTCAGACAAGTTCCATCCCACCTTTGAGTC AGGTACCAGCAACTAAGGTTTCAGAGCTGAACCCTAATGCAGAAGTGTGGGGGGCTCCTGTGTTACATCTGGAAGCAAGCAGTGCTGCTG ACGGTGTGAGTGCTGCATGGGAGGAGGTGGCTGGCCACCACGCAGACCGTGGCCCGCAGGGATCGGATGCCAATGGTGATGGTGACCAGG GCCATGAGAATGCCGCATTGCCAGACCCGCAGGAGTCGGACCCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTC TGCCTGAAAATAGCGAGACAGAGTACACAGTCATTAATGAAGCCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAAT ATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTCGTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACT CCTGCCTGATCCACCCAGGTTGTACCATCTTTGAAAACTGCAAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATG TGAAGGGGTTCTACTGTGCAGAGTGCCGAGCAGGCTGGTACGGAGGAGACTGCATGCGATGTGGCCAGGTTCTGCGAGCCCCAAAGGGTC AGATTTTGTTGGAAAGCTATCCCCTAAATGCTCACTGTGAATGGACCATTCATGCTAAACCTGGGTTTGTCATCCAACTAAGATTTGTCA TGTTGAGCCTGGAGTTTGACTACATGTGCCAGTATGACTATGTTGAGGTTCGTGATGGAGACAACCGCGATGGCCAGATCATCAAGCGTG TCTGTGGCAACGAGCGGCCAGCTCCTATCCAGAGCATAGGATCCTCACTCCACGTCCTCTTCCACTCCGATGGCTCCAAGAATTTTGACG GTTTCCATGCCATTTATGAGGAGATCACAGCATGCTCCTCATCCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCTGGATCTT ACAAGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGTGAAAATCTCCTTGAAGAAAGAAACTGCTCAGACCCTGGGGGCCCAGTCA ATGGGTACCAGAAAATAACAGGGGGCCCTGGGCTTATCAACGGACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTTTGTAACAACT CCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGCAGAATGGAGAGTGGTCAGGGAAACAGCCCATCTGCATAAAAGCCTGCCGAG AACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTCCGATGCAGGTTCAGTCAAGGGAGACACCATTACACCAGCTATACTCAGCGG CCTTCAGCAAGCAGAAACTGCAGAGTGCCCCTACCAAGAAGCCAGCCCTTCCCTTTGGAGATCTGCCCATGGGATACCAACATCTGCATA CCCAGCTCCAGTATGAGTGCATCTCACCCTTCTACCGCCGCCTGGGCAGCAGCAGGAGGACATGTCTGAGGACTGGGAAGTGGAGTGGGC GGGCACCATCCTGCATCCCTATCTGCGGGAAAATTGAGAACATCACTGCTCCAAAGACCCAAGGGTTGCGCTGGCCGTGGCAGGCAGCCA TCTACAGGAGGACCAGCGGGGTGCATGACGGCAGCCTACACAAGGGAGCGTGGTTCCTAGTCTGCAGCGGTGCCCTGGTGAATGAGCGCA CTGTGGTGGTGGCTGCCCACTGTGTTACTGACCTGGGGAAGGTCACCATGATCAAGACAGCAGACCTGAAAGTTGTTTTGGGGAAATTCT ACCGGGATGATGACCGGGATGAGAAGACCATCCAGAGCCTACAGATTTCTGCTATCATTCTGCATCCCAACTATGACCCCATCCTGCTTG ATGCTGACATCGCCATCCTGAAGCTCCTAGACAAGGCCCGTATCAGCACCCGAGTCCAGCCCATCTGCCTCGCTGCCAGTCGGGATCTCA GCACTTCCTTCCAGGAGTCCCACATCACTGTGGCTGGCTGGAATGTCCTGGCAGACGTGAGGAGCCCTGGCTTCAAGAACGACACACTGC GCTCTGGGGTGGTCAGTGTGGTGGACTCGCTGCTGTGTGAGGAGCAGCATGAGGACCATGGCATCCCAGTGAGTGTCACTGATAACATGT TCTGTGCCAGCTGGGAACCCACTGCCCCTTCTGATATCTGCACTGCAGAGACAGGAGGCATCGCGGCTGTGTCCTTCCCGGGACGAGCAT CTCCTGAGCCACGCTGGCATCTGATGGGACTGGTCAGCTGGAGCTATGATAAAACATGCAGCCACAGGCTCTCCACTGCCTTCACCAAGG TGCTGCCTTTTAAAGACTGGATTGAAAGAAATATGAAATGAACCATGCTCATGCACTCCTTGAGAAGTGTTTCTGTATATCCGTCTGTAC GTGTGTCATTGCGTGAAGCAGTGTGGGCCTGAAGTGTGATTTGGCCTGTGAACTTGGGCTGTGCCAGGGCTTCTGACTTCAGGGACAAAA CTCAGTGAAGGGTGAGTAGACCTCCATTGCTGGTAGGCTGATGCCGCGTCCACTACTAGGACAGCCAATTGGAAGATGCCAGGGCTTGCA AGAAGTAAGTTTCTTCAAAGAAGACCATATACAAAACCTCTCCACTCCACTGACCTGGTGGTCTTCCCCAACTTTCAGTTATACGAATGC CATCAGCTTGACCAGGGAAGATCTGGGCTTCATGAGGCCCCTTTTGAGGCTCTCAAGTTCTAGAGAGCTGCCTGTGGGACAGCCCAGGGC AGCAGAGCTGGGATGTGGTGCATGCCTTTGTGTACATGGCCACAGTACAGTCTGGTCCTTTTCCTTCCCCATCTCTTGTACACATTTTAA >In-frame_LARP4B_ENST00000316157_chr10_909683_-_PAMR1_ENST00000378878_chr11_35515820_-_2754nt AGCATCCTGAGGTTAGCATTACACTTCTCCCAGTGGAGCCCATGACTTCTGATCAGGACGCTAAGGTTGTGGCTGAACCGCAGACGCAGA GAGTCCAGGAGGGCAAGGACAGCGCTCATCTGATGAATGGTCCTATATCTCAAACCACTTCTCAGACAAGTTCCATCCCACCTTTGAGTC AGGTACCAGCAACTAAGGTTTCAGAGCTGAACCCTAATGCAGAAGTGTGGGGGGCTCCTGTGTTACATCTGGAAGCAAGCAGTGCTGCTG ACGGTGTGAGTGCTGCATGGGAGGAGGTGGCTGGCCACCACGCAGACCGTGGCCCGCAGGGATCGGATGCCAATGGTGATGGTGACCAGG GCCATGAGAATGCCGCATTGCCAGACCCGCAGGAGTCGGACCCAGCAGACATGAACGCTCTCGCTCTGGGTCCCTCAGAATATGACTCTC TGCCTGAAAATAGCGAGACAGAGTACACAGTCATTAATGAAGCCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAAT ATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTCGTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACT CCTGCCTGATCCACCCAGGTTGTACCATCTTTGAAAACTGCAAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATG TGAAGGGGTTCTACTGTGCAGAGTGCCGAGCAGGCTGGTACGGAGGAGACTGCATGCCATGCTCCTCATCCCCTTGTTTCCATGACGGCA CGTGCGTCCTTGACAAGGCTGGATCTTACAAGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGTGAAAATCTCCTTGAAGAAAGAA ACTGCTCAGACCCTGGGGGCCCAGTCAATGGGTACCAGAAAATAACAGGGGGCCCTGGGCTTATCAACGGACGCCATGCTAAAATTGGCA CCGTGGTGTCTTTCTTTTGTAACAACTCCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGCAGAATGGAGAGTGGTCAGGGAAAC AGCCCATCTGCATAAAAGCCTGCCGAGAACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTCCGATGCAGGTTCAGTCAAGGGAGA CACCATTACACCAGCTATACTCAGCGGCCTTCAGCAAGCAGAAACTGCAGAGTGCCCCTACCAAGAAGCCAGCCCTTCCCTTTGGAGATC TGCCCATGGGATACCAACATCTGCATACCCAGCTCCAGTATGAGTGCATCTCACCCTTCTACCGCCGCCTGGGCAGCAGCAGGAGGACAT GTCTGAGGACTGGGAAGTGGAGTGGGCGGGCACCATCCTGCATCCCTATCTGCGGGAAAATTGAGAACATCACTGCTCCAAAGACCCAAG GGTTGCGCTGGCCGTGGCAGGCAGCCATCTACAGGAGGACCAGCGGGGTGCATGACGGCAGCCTACACAAGGGAGCGTGGTTCCTAGTCT GCAGCGGTGCCCTGGTGAATGAGCGCACTGTGGTGGTGGCTGCCCACTGTGTTACTGACCTGGGGAAGGTCACCATGATCAAGACAGCAG ACCTGAAAGTTGTTTTGGGGAAATTCTACCGGGATGATGACCGGGATGAGAAGACCATCCAGAGCCTACAGATTTCTGCTATCATTCTGC ATCCCAACTATGACCCCATCCTGCTTGATGCTGACATCGCCATCCTGAAGCTCCTAGACAAGGCCCGTATCAGCACCCGAGTCCAGCCCA TCTGCCTCGCTGCCAGTCGGGATCTCAGCACTTCCTTCCAGGAGTCCCACATCACTGTGGCTGGCTGGAATGTCCTGGCAGACGTGAGGA GCCCTGGCTTCAAGAACGACACACTGCGCTCTGGGGTGGTCAGTGTGGTGGACTCGCTGCTGTGTGAGGAGCAGCATGAGGACCATGGCA TCCCAGTGAGTGTCACTGATAACATGTTCTGTGCCAGCTGGGAACCCACTGCCCCTTCTGATATCTGCACTGCAGAGACAGGAGGCATCG CGGCTGTGTCCTTCCCGGGACGAGCATCTCCTGAGCCACGCTGGCATCTGATGGGACTGGTCAGCTGGAGCTATGATAAAACATGCAGCC ACAGGCTCTCCACTGCCTTCACCAAGGTGCTGCCTTTTAAAGACTGGATTGAAAGAAATATGAAATGAACCATGCTCATGCACTCCTTGA GAAGTGTTTCTGTATATCCGTCTGTACGTGTGTCATTGCGTGAAGCAGTGTGGGCCTGAAGTGTGATTTGGCCTGTGAACTTGGGCTGTG CCAGGGCTTCTGACTTCAGGGACAAAACTCAGTGAAGGGTGAGTAGACCTCCATTGCTGGTAGGCTGATGCCGCGTCCACTACTAGGACA GCCAATTGGAAGATGCCAGGGCTTGCAAGAAGTAAGTTTCTTCAAAGAAGACCATATACAAAACCTCTCCACTCCACTGACCTGGTGGTC TTCCCCAACTTTCAGTTATACGAATGCCATCAGCTTGACCAGGGAAGATCTGGGCTTCATGAGGCCCCTTTTGAGGCTCTCAAGTTCTAG AGAGCTGCCTGTGGGACAGCCCAGGGCAGCAGAGCTGGGATGTGGTGCATGCCTTTGTGTACATGGCCACAGTACAGTCTGGTCCTTTTC |
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FusionGenePPI for LARP4B_PAMR1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| LARP4B | GNB2L1, ELAVL1, SIRT7, CUL3, COPS5, CDV3, HSP90AA1, MMS19, CDK18, HECW2, LIN28A, FHL3, RBFOX2, NTRK1, IFI16, XPO1, NPM1, RPL10, STRAP, FAM136A, ASB3, IL13RA2, TRIM25 | PAMR1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for LARP4B_PAMR1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LARP4B_PAMR1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | PAMR1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
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