|
Fusion gene ID: 19295 |
FusionGeneSummary for KSR1_MSI2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: KSR1_MSI2 | Fusion gene ID: 19295 | Hgene | Tgene | Gene symbol | KSR1 | MSI2 | Gene ID | 8844 | 124540 |
Gene name | kinase suppressor of ras 1 | musashi RNA binding protein 2 | |
Synonyms | KSR|RSU2 | MSI2H | |
Cytomap | 17q11.2 | 17q22 | |
Type of gene | protein-coding | protein-coding | |
Description | kinase suppressor of Ras 1 | RNA-binding protein Musashi homolog 2musashi homolog 2musashi-2 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q8IVT5 | Q96DH6 | |
Ensembl transtripts involved in fusion gene | ENST00000509603, ENST00000319524, ENST00000268763, ENST00000398988, ENST00000581975, ENST00000582410, ENST00000578981, | ENST00000416426, ENST00000284073, ENST00000322684, ENST00000442934, ENST00000579180, ENST00000579505, | |
Fusion gene scores | * DoF score | 6 X 5 X 4=120 | 23 X 13 X 8=2392 |
# samples | 6 | 22 | |
** MAII score | log2(6/120*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(22/2392*10)=-3.44264196067345 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: KSR1 [Title/Abstract] AND MSI2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-E2-A14V-01A | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000509603 | ENST00000416426 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000509603 | ENST00000284073 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000509603 | ENST00000322684 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000509603 | ENST00000442934 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000509603 | ENST00000579180 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
5CDS-intron | ENST00000509603 | ENST00000579505 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000319524 | ENST00000416426 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000319524 | ENST00000284073 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000319524 | ENST00000322684 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000319524 | ENST00000442934 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
In-frame | ENST00000319524 | ENST00000579180 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
5CDS-intron | ENST00000319524 | ENST00000579505 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000268763 | ENST00000416426 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000268763 | ENST00000284073 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000268763 | ENST00000322684 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000268763 | ENST00000442934 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000268763 | ENST00000579180 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-intron | ENST00000268763 | ENST00000579505 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000398988 | ENST00000416426 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000398988 | ENST00000284073 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000398988 | ENST00000322684 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000398988 | ENST00000442934 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000398988 | ENST00000579180 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-intron | ENST00000398988 | ENST00000579505 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000581975 | ENST00000416426 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000581975 | ENST00000284073 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000581975 | ENST00000322684 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000581975 | ENST00000442934 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000581975 | ENST00000579180 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-intron | ENST00000581975 | ENST00000579505 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000582410 | ENST00000416426 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000582410 | ENST00000284073 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000582410 | ENST00000322684 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000582410 | ENST00000442934 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000582410 | ENST00000579180 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-intron | ENST00000582410 | ENST00000579505 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000578981 | ENST00000416426 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000578981 | ENST00000284073 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000578981 | ENST00000322684 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000578981 | ENST00000442934 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-3CDS | ENST00000578981 | ENST00000579180 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
intron-intron | ENST00000578981 | ENST00000579505 | KSR1 | chr17 | 25783900 | + | MSI2 | chr17 | 55478740 | + |
Top |
FusionProtFeatures for KSR1_MSI2 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
KSR1 | MSI2 |
Scaffolding protein that is part of a multiproteinsignaling complex. Promotes phosphorylation of Raf family membersand activation of downstream MAP kinases. Promotes activation ofMAPK1 and/or MAPK3, both in response to EGF and to cAMP. Does nothave kinase activity by itself. {ECO:0000250|UniProtKB:Q61097}. | RNA binding protein that regulates the expression oftarget mRNAs at the translation level. May play a role in theproliferation and maintenance of stem cells in the central nervoussystem (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >MSI2 | chr17:25783900 | chr17:55478740 | ENST00000284073 | + | 4 | 14 | 253_260 | 104 | 1951 | Compositional bias | Note=Poly-Ala |
Tgene | >MSI2 | chr17:25783900 | chr17:55478740 | ENST00000322684 | + | 3 | 10 | 253_260 | 100 | 252 | Compositional bias | Note=Poly-Ala |
Tgene | >MSI2 | chr17:25783900 | chr17:55478740 | ENST00000579180 | + | 0 | 7 | 253_260 | 0 | 152 | Compositional bias | Note=Poly-Ala |
Tgene | >MSI2 | chr17:25783900 | chr17:55478740 | ENST00000284073 | + | 4 | 14 | 110_187 | 104 | 1951 | Domain | RRM 2 |
Tgene | >MSI2 | chr17:25783900 | chr17:55478740 | ENST00000322684 | + | 3 | 10 | 110_187 | 100 | 252 | Domain | RRM 2 |
Tgene | >MSI2 | chr17:25783900 | chr17:55478740 | ENST00000579180 | + | 0 | 7 | 110_187 | 0 | 152 | Domain | RRM 2 |
Tgene | >MSI2 | chr17:25783900 | chr17:55478740 | ENST00000579180 | + | 0 | 7 | 21_111 | 0 | 152 | Domain | RRM 1 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >KSR1 | chr17:25783900 | chr17:55478740 | ENST00000268763 | + | 1 | 22 | 17_21 | -149 | 787 | Compositional bias | Note=Poly-Gly |
Hgene | >KSR1 | chr17:25783900 | chr17:55478740 | ENST00000268763 | + | 1 | 22 | 289_292 | -149 | 787 | Compositional bias | Note=Poly-Pro |
Hgene | >KSR1 | chr17:25783900 | chr17:55478740 | ENST00000268763 | + | 1 | 22 | 613_883 | -149 | 787 | Domain | Protein kinase |
Hgene | >KSR1 | chr17:25783900 | chr17:55478740 | ENST00000268763 | + | 1 | 22 | 1_172 | -149 | 787 | Region | Mediates association with membranes |
Hgene | >KSR1 | chr17:25783900 | chr17:55478740 | ENST00000268763 | + | 1 | 22 | 347_391 | -149 | 787 | Zinc finger | Phorbol-ester/DAG-type |
Tgene | MSI2 | chr17:25783900 | chr17:55478740 | ENST00000284073 | + | 4 | 14 | 21_111 | 104 | 1951 | Domain | RRM 1 |
Tgene | MSI2 | chr17:25783900 | chr17:55478740 | ENST00000322684 | + | 3 | 10 | 21_111 | 100 | 252 | Domain | RRM 1 |
Top |
FusionGeneSequence for KSR1_MSI2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000416426_chr17_55478740_+_320aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM DAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSP >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000284073_chr17_55478740_+_302aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM DAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGN >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000322684_chr17_55478740_+_229aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000442934_chr17_55478740_+_302aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM DAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGN >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000579180_chr17_55478740_+_229aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000416426_chr17_55478740_+_320aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM DAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSP >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000284073_chr17_55478740_+_302aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM DAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGN >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000322684_chr17_55478740_+_229aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000442934_chr17_55478740_+_302aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM DAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGN >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000579180_chr17_55478740_+_229aa MDRAALRAAAMGEKKEGGGGGDAAAAEGGAGAAASRALQQCGQLQKLIDISIGSLRGLRTKCAVSNDLTQQEIRTLEMVTRTKKIFVGGL SANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000416426_chr17_55478740_+_960nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGTCCTGAATAGC TACAGTGCTCAACCGAATTTTGGCGCGCCCGCTTCCCCGGCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCA GGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAATTACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGC >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000284073_chr17_55478740_+_906nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGGCTCCAACCCG GCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAAT TACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATAC >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000322684_chr17_55478740_+_687nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000442934_chr17_55478740_+_906nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGGCTCCAACCCG GCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAAT TACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATAC >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000579180_chr17_55478740_+_687nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000416426_chr17_55478740_+_960nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGTCCTGAATAGC TACAGTGCTCAACCGAATTTTGGCGCGCCCGCTTCCCCGGCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCA GGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAATTACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGC >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000284073_chr17_55478740_+_906nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGGCTCCAACCCG GCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAAT TACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATAC >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000322684_chr17_55478740_+_687nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000442934_chr17_55478740_+_906nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGGCTCCAACCCG GCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAAT TACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATAC >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000579180_chr17_55478740_+_687nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000416426_chr17_55478740_+_1564nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGTCCTGAATAGC TACAGTGCTCAACCGAATTTTGGCGCGCCCGCTTCCCCGGCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCA GGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAATTACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGC TTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATACCATTGAGCAGGTGCTTTCGTTGCCATCTCACTCTGA GAGCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTGTTTAGGTGATGTCCTCAGACCTGGACCCCCACCAGC CTCACTCCCCATCCCAACCAGAGATGGCTCACTTCGGATCGAGGGTTGACTACATCTCATCATCTCACGAATCTGCTGTAATATAAGACA ACAGCTTTTAAATGTGTATATAACCCATGATTTCGGTTTTGTTTTGTTTTGTTTTTCTTGATGGTTTCCCTCTCCCTCCCTCTCTTCCCA TTCTCCTTTTAAATCTCTTTGAATCACATTTGGTAGTGATTTTGACTTAGTCCAGTAGTCACATAGCTTTAATATCTAGTTCAAAGCTAA CCATAGTATAATTGTTATATTAAGGAGTTATTTTTTCTTAAAACATTTTTTTTTGCTTGTTTTGGTTCTGTTCTCACTTTTAAAGGATGC TGAGATGGTAATATGACTCTCCATATTTTGGTACCAATTCTGAGACTGTATGAATTTTCAGGTGGAACTTTAGCACACACTGAAGCAAAG >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000284073_chr17_55478740_+_6074nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGGCTCCAACCCG GCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAAT TACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATAC CATTGAGCAGGTGCTTTCGTTGCCATCTCACTCTGAGAGCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTG TTTAGGTGATGTCCTCAGACCTGGACCCCCACCAGCCTCACTCCCCATCCCAACCAGAGATGGCTCACTTCGGATCGAGGGTTGACTACA TCTCATCATCTCACGAATCTGCTGTAATATAAGACAACAGCTTTTAAATGTGTATATAACCCATGATTTCGGTTTTGTTTTGTTTTGTTT TTCTTGATGGTTTCCCTCTCCCTCCCTCTCTTCCCATTCTCCTTTTAAATCTCTTTGAATCACATTTGGTAGTGATTTTGACTTAGTCCA GTAGTCACATAGCTTTAATATCTAGTTCAAAGCTAACCATAGTATAATTGTTATATTAAGGAGTTATTTTTTCTTAAAACATTTTTTTTT GCTTGTTTTGGTTCTGTTCTCACTTTTAAAGGATGCTGAGATGGTAATATGACTCTCCATATTTTGGTACCAATTCTGAGACTGTATGAA TTTTCAGGTGGAACTTTAGCACACACTGAAGCAAAGTTGTGAAGTGCAGGGCGGGAGGTGGGCGTGAGCTTTCTATTTTGCGTTGTAGAA GAAGTGAGATGTAGTAAGCTAATTAACAGACTTTCTAGCAGTTCTTTTTGTGATGTCTCTTTGTTAATCTGAGTCTATCTATTTTCGGCA ATAAGGTAAGGACGACAGTGTTTTGAGTGTCCTCCTTTTCTATAAGTGCTTTTTTTCTGTTGAAAGAGGTGATATTATAAGGTTTTTTGA AATTGTGAATTCTAAAAAAGAAATGTTGTAAATACAATTCCATTAACTACATAGAAACTATTAAGAAAGAGAGAATCAAAAATATTTTTG TGAGGGAGTCGGTCCCAGGCAGTTTGATGCTCTGTGGAAGGAGGCGGGAAGGGAACGTTGGCCAAGTCAGTTACTGAGATGAAGATCGCC CAGCTGCCAGGACCACCCCAGGACAAGTTAGAGCACTGTTTAGCTCCTTTGTCTGTGTGATAGACCTAAGAACTGTATTAGTGTTGTACC AGCCTATTAACCTCTTGTCTGTGCACAGCTTCAAATGTTACCGTCTAGTTAGATTTTTATTTAAAATATGAAAAACTGCTTTTCCCAAGA TGTTTTTTAAAAACAAAGCTACAATTTTAATATTTAACATATTTAAAGTTTCAAAGCACACCTGTTTGGCTTGGGTGGGGGTGGGGTGGG GGGGACATTCTTTTTCAGTCTTAATTTTTAAATATTTGATCATTTTCTATTGTCCAATCATTTCAGCACCTCCAAAGGTCCCTAGGACAC TTTGCCTCTCTTCTCCCCCTGCCCCCCACCCTGCTCCCACATCTGGGGGCCCATGGGCCAGGAGTGGATAAGCCTGCATTAATACAACCT TTCTCCATTCACTTTCTATTTACAAATTAGGAAAGCAACCTTTTGGTTTATATATATTTTTTTTAATACCTCAGTGCTGCAAGTATCACC AGAGAGGCTATGGAAGAATTTTTTTTTAATTTATTGTAGATGTAAACAGAATTTTAAAAATAAAAAGTATAAACATCACTGCACTGTGAC TGGTGGGAAAAACTGACAGTTTCCTCTTTGCACATGTTTAACATTTGGCTGTTATAATATATGGTCCTCGGTTGGGGAAAGATACTTATG ATGAAGGATATTTTTTAATTTAACTTTTTTTTAAATATTGGTAATAGGTCGGCAACAGCAACTATAGAAGTACAACTCAATAGATGGCAT TAAAACATATTGTAGTGTGGATATATATTTTTTCTTTTTTAAAATGTGATATTGACGTTTTATTAATATTTTTTAAATTGTTACGTTTAT AAATTTGGTACTTAAGGCACAGCCAGTATGAGACACTGAATGCGACATTTATTATAAAGAGCTGCTGCACTCCTATTTTTATAAATTTTA CTAACAAAGTAGACTAATGTAGACATTCACAGACATGGTAGGGCAAAAGCATCTTCAAACTAAAGACTCCAAAATGCTAACTCAGAAAGA AAGAAAAAACCCGTTTTCAATTCTAATGAAACAGCAACAACATTTTTTTTAATTAAAAAAAAAATCATGTTCTTTGTTTTTCTAATAAAA TGTTAGGTTGTTTGGTGAGGTTTTTTTGTTGTTTTTTTCCTTTCTTTGTTTCTTTTCTTTTCCCCCAAACAACCAGATTAAATGCTGAGC GCTTTTAAAATATCAAAACTTGTTCAAGTCATAAAACAACAAAACATAAGTTTTATTTAAAAAAAAAAAAAGAAAGAAAAAATAGTAAAT TCCCAGAAATTCAGTGTTTAGACGAGGGAATTTAATTCCTATTTTGTCCATGTTGGTGATGTACTGTACTTCCCTTCCTTTTCTCTGCAT CCCCCATCACCTCATAGAAGACTCTTTGTTGATCATTGTATGTTAATAATGTATAAAATGGCTATCTTGTAAGCGTGCTGTCCTGGTACT AGTGTAGCGACTTTTTTTCTCCTCTTTCTTCTAGTACATATTGATAGGTATAACATAATTAAGGTTTAAAAAAAATTAGACATAGTTATT CAGATTTAGGACCAGTAAGGATAGAACTTTCTCTTATTTATGAAAAAAAATGCTAATAATTTTGGGGCAGTTTTTTCCTTTAATTATTTT TTTCAATTTCAAGTTTAATTTTATTTTAGCTGATCTGATGTGGTTTCAACTAACCCAAGGTCTCACCATGTTAAAATGCCGGCGGACTCT ACGGCGTTTTGTAGATCCCCCCCCCCCCACCCACTGTGAAGGGGTGCCATACTACCTTAAATGCTAATGCTAGATATGCAAAACTGGATT TTTTTAATTTATTTTTTAAAAGAGGGAGGCATGGTATATTAAAATGATTTTACTAAGAGAAAAAATATTTTTTTAAGAATGCTCAGAAGA AATTGATAATCTGTGTGAATATGTTTTAGATGTTTATATACCTTTTGAAGAGACCCAGTAGCCCATAGCACAAATCTTGTGGAAATCCGA TATGTTTTAATGTGGCTACCTAGGTTTAAGGTTCACGTTAGTCCCCCCATTCCATCTAGAAGTCCATTTTGAAAGATTTTTGTAAATTCT TTTAACACTGATGTTTCAGCCTCGTCTTTGTTTCAGTTAAGCTCAATGGCGAACATGGGAACCACCTTTCGCCTTCCCTGGGGGAGAAAC CCTCTTGGCTGATGGCTTTTCCCCGGAATTATCAAACAGCCACCGGGTGACTTTCTGGCTTCCAGATCCATCTGCCTGAGACCCCCGAAC TCCTCTCCTCCCAAGCAGAGGCGAGTGAGTGGCATTAGCTCCCGGACCCATTCCCGGTCCTAGCTGGGCATGGGGCTGACGGAGATGACC AAGCCTTGGTCTGCTCTCTAGCAGCTTCCACAGACTTGGCTCGTGGCCTTCCTTATATCCACTGGGAACAAACAGCCTCGCGCTCTATAC CAAACAGCCTCGCGCTCTATCCCAGTCGCCCATTAGCTTGATTCAAACAAAGCCCCAGCAGGCCTTTGCGTTTTTATCCTTCATAACCTT CATCTTAATTTGAACTTGTAGCTTGGACTTTAAGGTAGCATGGCTCTATTGCTGTCAATTTACTGTTTCACTGCACAGCAATCACAGCCA GTGAATGTTACACACATCTTGCTAGACTAGTATAAAAATCATTGGGTAATTGTTGGTTCTAATGACCTGAAAGGTGTTCAGTTTTTGTTC TTGGTTTTGTTTTGTTTTTGATTTCTTGGGGGTGGGTTTTGCTTGTTGTTCCTTTTCATTTGGGGGTTTTTGGGGAAAAAATTTATTTTT GGTTCCAAATAGAAAAACAAAACCTATTTTGATCTTTAGTGCAAACGAGGGCTAGGGACTTAGCCTCCTCCACCACCTCCACACTGCTTC ATTCTGCCATTCACTCACTGCAGCATATTCAAGAATAAAGCAATATCGTTTACTACATTTTTTATTGAAGGTCAGCCATGCTTTCTGTAT TATATTGCATATGAAATTGTTTACAAAAGAAACACTAACTCATACTTCTCTTTATTGGTTGCAAGTGGCACGCAGGAACAGAGGGAGAGT GGGGGGCTGGTGGGGGAGGGGAGATTTTTTTTTTTTTTTCTTGAATGTGCTTCGCAAGCCAGGCTATCTTCCAAGGAAGGCAGACAGTGG GAGAGCAGAGGGACTGACTGCAGGCAAGCACATTGAAGAAAGACACTGGCGGGTTTCCCCACCCTCACCCCAAAGCAGAAAACTAGCAGA CGTCAGCTCAGCCCCGTCCTGGGCACAGACACTACACAAGGAGACGCTGGAAGTTAAGCAATACTTTAATACTGTAATATGTTTGTTTTC TTTTTCTTTCTTTTTTTTCTACCAAAAAAAAGTAAGTAAACTAAAACACAAAAACATATAAATAAAATCCATCCCTCTTGTCGGGGACCT GCAGGGGGGCAACCTTAATCCAAACACCTGGCTATCAAATAATCAGAATGTATTGTCTCAGACAGGATTTCAGTTCCGGGAGGCAGGGGC ATGATGGGGGAGGGGGCCGGAGGCTGAGAGACAAAAGTTCCAGAGCCTCCCTCGAAGGTTCTCTACTACTGTATTCTGTACATAATGTAC CATCCCATGTGGAATCTGTGAGTGTCCTCTTAAGTAGCGTGGGCTAGCCAATCTGCCGTTCATGGTGTATTGTAAACTCCGAATTCCATA TGTAATAGGATGCAAGTCTAAGCGTTTCATGTGGACATAAATGTATCTAAATAAAACTTTCCCTAGCACTGTGGCTGACCTCACCCTTAC TTTTATACTTTAGTATGAAACTGATGAGAACTTTGGTAGTGAGTATTTTTTTTATATATATACATATATATGTACTATCTATATATATAT CTCAAGCATCTTTCAGGTCTTTGTGTGTGGCTTTCTTAAAGCCCTGTTGTAAAAAATTACTATGTGGATGGCAGTCTCTCACATCACAGA TGTGGAAAGTATAATTTTATATTTGTATTTTCAAATAAATAAGTTTGTGAAAGGTTTCCATCCTCTACTGTGGTCCAGAAATCAATGTGT >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000322684_chr17_55478740_+_1756nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGACTATTTGCCGGTTTCACAAGACATAATTTTTATCAACTAGCTCTTAAGAGAGGCATAGCAAAGTGGGGGTTGC TACCATTTCTAGAGAGAGAGGACACAGTCCCGGCCTGGGCTGCCCCCGCTCCAGTCAATGCTCACTGAAAGTCTGTCTTAGCTGCCTGTT TGAATGACTGTTCTTTTTCTCATTTTTAATTCTTGGACTCATGTCCTCATTGCTTCACTCAATTAAAAAAAAATTATTCTCCAGTCCCCT CCCACTTTGCTTCTTGTATGCATTGTGACCGACCCCACTTCCTCAGAATGTAACGGGGCCAGAGGGAAACTTCTCACAAACTTCGTAGAG CCTCCTCAGGGGAAGCTAGGAAGAAGACATCAAATGTTTTTAAGTCATGACCAAACAGGCTTGTTGGGGACATATCATGGGGTGAGCTTT GAAGTGCTGGTGGTCCAGAGGGGTTGCAGATACGTGACTTGGAGCACCCGTGTCTTACGATGGACAGTGATAAAGGTGAACACACAGAGA CAGACTATTCTCTAAGAATGTGAGAAACCTGATCTGGAAGAGGAGCTATATAAACACTATCTGACTATCTTTGTCTTTTGGGGCCAGTGG CTGTTGGCATAATCACAAGCCTGTCTGTCTTCGAGAAGGGACAGTGGAGTCATCCAGGTGCTGCCACATGACAGGCACGGTGGGCACCGA TCCACAGTGGGCCCCGCCTTCCCCAGCTCGCCTCCCTGCCTGTGCTGGCCTGGCCTTGCCTGCTGGCACCATTGGAGTAGGAGGGGGTGG AACACAGGGGGCCCATCCTGATCAGGCCCCATCTCAAGGTTGGCACTCCTGCCCATCACCCTTAGAAGGATCTTTTCCCATGGCTTGACT TCCTTCATTTCCCTAACTGAAATACACCCACTCTCTTGGAATAATGACGTACCACTCAGTTGGACCCTCAAGAGTCACTGCTTTGTCTGT GCTGGTAGTTTGTGAGAAGTGACCCGCACGCTTCCATTTGATGCATTTGATGTGAGTGAATCCATACATTTGAATGTCATTGTCCTTGAG >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000442934_chr17_55478740_+_1686nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGGCTCCAACCCG GCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAAT TACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATAC CATTGAGCAGGTGCTTTCGTTGCCATCTCACTCTGAGAGCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTG TTTAGGTGATGTCCTCAGACCTGGACCCCCACCAGCCTCACTCCCCATCCCAACCAGAGATGGCTCACTTCGGATCGAGGGTTGACTACA TCTCATCATCTCACGAATCTGCTGTAATATAAGACAACAGCTTTTAAATGTGTATATAACCCATGATTTCGGTTTTGTTTTGTTTTGTTT TTCTTGATGGTTTCCCTCTCCCTCCCTCTCTTCCCATTCTCCTTTTAAATCTCTTTGAATCACATTTGGTAGTGATTTTGACTTAGTCCA GTAGTCACATAGCTTTAATATCTAGTTCAAAGCTAACCATAGTATAATTGTTATATTAAGGAGTTATTTTTTCTTAAAACATTTTTTTTT GCTTGTTTTGGTTCTGTTCTCACTTTTAAAGGATGCTGAGATGGTAATATGACTCTCCATATTTTGGTACCAATTCTGAGACTGTATGAA TTTTCAGGTGGAACTTTAGCACACACTGAAGCAAAGTTGTGAAGTGCAGGGCGGGAGGTGGGCGTGAGCTTTCTATTTTGCGTTGTAGAA GAAGTGAGATGTAGTAAGCTAATTAACAGACTTTCTAGCAGTTCTTTTTGTGATGTCTCTTTGTTAATCTGAGTCTATCTATTTTCGGCA >In-frame_KSR1_ENST00000509603_chr17_25783900_+_MSI2_ENST00000579180_chr17_55478740_+_1761nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGACTATTTGCCGGTTTCACAAGACATAATTTTTATCAACTAGCTCTTAAGAGAGGCATAGCAAAGTGGGGGTTGC TACCATTTCTAGAGAGAGAGGACACAGTCCCGGCCTGGGCTGCCCCCGCTCCAGTCAATGCTCACTGAAAGTCTGTCTTAGCTGCCTGTT TGAATGACTGTTCTTTTTCTCATTTTTAATTCTTGGACTCATGTCCTCATTGCTTCACTCAATTAAAAAAAAATTATTCTCCAGTCCCCT CCCACTTTGCTTCTTGTATGCATTGTGACCGACCCCACTTCCTCAGAATGTAACGGGGCCAGAGGGAAACTTCTCACAAACTTCGTAGAG CCTCCTCAGGGGAAGCTAGGAAGAAGACATCAAATGTTTTTAAGTCATGACCAAACAGGCTTGTTGGGGACATATCATGGGGTGAGCTTT GAAGTGCTGGTGGTCCAGAGGGGTTGCAGATACGTGACTTGGAGCACCCGTGTCTTACGATGGACAGTGATAAAGGTGAACACACAGAGA CAGACTATTCTCTAAGAATGTGAGAAACCTGATCTGGAAGAGGAGCTATATAAACACTATCTGACTATCTTTGTCTTTTGGGGCCAGTGG CTGTTGGCATAATCACAAGCCTGTCTGTCTTCGAGAAGGGACAGTGGAGTCATCCAGGTGCTGCCACATGACAGGCACGGTGGGCACCGA TCCACAGTGGGCCCCGCCTTCCCCAGCTCGCCTCCCTGCCTGTGCTGGCCTGGCCTTGCCTGCTGGCACCATTGGAGTAGGAGGGGGTGG AACACAGGGGGCCCATCCTGATCAGGCCCCATCTCAAGGTTGGCACTCCTGCCCATCACCCTTAGAAGGATCTTTTCCCATGGCTTGACT TCCTTCATTTCCCTAACTGAAATACACCCACTCTCTTGGAATAATGACGTACCACTCAGTTGGACCCTCAAGAGTCACTGCTTTGTCTGT GCTGGTAGTTTGTGAGAAGTGACCCGCACGCTTCCATTTGATGCATTTGATGTGAGTGAATCCATACATTTGAATGTCATTGTCCTTGAG >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000416426_chr17_55478740_+_1564nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGTCCTGAATAGC TACAGTGCTCAACCGAATTTTGGCGCGCCCGCTTCCCCGGCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCA GGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAATTACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGC TTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATACCATTGAGCAGGTGCTTTCGTTGCCATCTCACTCTGA GAGCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTGTTTAGGTGATGTCCTCAGACCTGGACCCCCACCAGC CTCACTCCCCATCCCAACCAGAGATGGCTCACTTCGGATCGAGGGTTGACTACATCTCATCATCTCACGAATCTGCTGTAATATAAGACA ACAGCTTTTAAATGTGTATATAACCCATGATTTCGGTTTTGTTTTGTTTTGTTTTTCTTGATGGTTTCCCTCTCCCTCCCTCTCTTCCCA TTCTCCTTTTAAATCTCTTTGAATCACATTTGGTAGTGATTTTGACTTAGTCCAGTAGTCACATAGCTTTAATATCTAGTTCAAAGCTAA CCATAGTATAATTGTTATATTAAGGAGTTATTTTTTCTTAAAACATTTTTTTTTGCTTGTTTTGGTTCTGTTCTCACTTTTAAAGGATGC TGAGATGGTAATATGACTCTCCATATTTTGGTACCAATTCTGAGACTGTATGAATTTTCAGGTGGAACTTTAGCACACACTGAAGCAAAG >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000284073_chr17_55478740_+_6074nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGGCTCCAACCCG GCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAAT TACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATAC CATTGAGCAGGTGCTTTCGTTGCCATCTCACTCTGAGAGCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTG TTTAGGTGATGTCCTCAGACCTGGACCCCCACCAGCCTCACTCCCCATCCCAACCAGAGATGGCTCACTTCGGATCGAGGGTTGACTACA TCTCATCATCTCACGAATCTGCTGTAATATAAGACAACAGCTTTTAAATGTGTATATAACCCATGATTTCGGTTTTGTTTTGTTTTGTTT TTCTTGATGGTTTCCCTCTCCCTCCCTCTCTTCCCATTCTCCTTTTAAATCTCTTTGAATCACATTTGGTAGTGATTTTGACTTAGTCCA GTAGTCACATAGCTTTAATATCTAGTTCAAAGCTAACCATAGTATAATTGTTATATTAAGGAGTTATTTTTTCTTAAAACATTTTTTTTT GCTTGTTTTGGTTCTGTTCTCACTTTTAAAGGATGCTGAGATGGTAATATGACTCTCCATATTTTGGTACCAATTCTGAGACTGTATGAA TTTTCAGGTGGAACTTTAGCACACACTGAAGCAAAGTTGTGAAGTGCAGGGCGGGAGGTGGGCGTGAGCTTTCTATTTTGCGTTGTAGAA GAAGTGAGATGTAGTAAGCTAATTAACAGACTTTCTAGCAGTTCTTTTTGTGATGTCTCTTTGTTAATCTGAGTCTATCTATTTTCGGCA ATAAGGTAAGGACGACAGTGTTTTGAGTGTCCTCCTTTTCTATAAGTGCTTTTTTTCTGTTGAAAGAGGTGATATTATAAGGTTTTTTGA AATTGTGAATTCTAAAAAAGAAATGTTGTAAATACAATTCCATTAACTACATAGAAACTATTAAGAAAGAGAGAATCAAAAATATTTTTG TGAGGGAGTCGGTCCCAGGCAGTTTGATGCTCTGTGGAAGGAGGCGGGAAGGGAACGTTGGCCAAGTCAGTTACTGAGATGAAGATCGCC CAGCTGCCAGGACCACCCCAGGACAAGTTAGAGCACTGTTTAGCTCCTTTGTCTGTGTGATAGACCTAAGAACTGTATTAGTGTTGTACC AGCCTATTAACCTCTTGTCTGTGCACAGCTTCAAATGTTACCGTCTAGTTAGATTTTTATTTAAAATATGAAAAACTGCTTTTCCCAAGA TGTTTTTTAAAAACAAAGCTACAATTTTAATATTTAACATATTTAAAGTTTCAAAGCACACCTGTTTGGCTTGGGTGGGGGTGGGGTGGG GGGGACATTCTTTTTCAGTCTTAATTTTTAAATATTTGATCATTTTCTATTGTCCAATCATTTCAGCACCTCCAAAGGTCCCTAGGACAC TTTGCCTCTCTTCTCCCCCTGCCCCCCACCCTGCTCCCACATCTGGGGGCCCATGGGCCAGGAGTGGATAAGCCTGCATTAATACAACCT TTCTCCATTCACTTTCTATTTACAAATTAGGAAAGCAACCTTTTGGTTTATATATATTTTTTTTAATACCTCAGTGCTGCAAGTATCACC AGAGAGGCTATGGAAGAATTTTTTTTTAATTTATTGTAGATGTAAACAGAATTTTAAAAATAAAAAGTATAAACATCACTGCACTGTGAC TGGTGGGAAAAACTGACAGTTTCCTCTTTGCACATGTTTAACATTTGGCTGTTATAATATATGGTCCTCGGTTGGGGAAAGATACTTATG ATGAAGGATATTTTTTAATTTAACTTTTTTTTAAATATTGGTAATAGGTCGGCAACAGCAACTATAGAAGTACAACTCAATAGATGGCAT TAAAACATATTGTAGTGTGGATATATATTTTTTCTTTTTTAAAATGTGATATTGACGTTTTATTAATATTTTTTAAATTGTTACGTTTAT AAATTTGGTACTTAAGGCACAGCCAGTATGAGACACTGAATGCGACATTTATTATAAAGAGCTGCTGCACTCCTATTTTTATAAATTTTA CTAACAAAGTAGACTAATGTAGACATTCACAGACATGGTAGGGCAAAAGCATCTTCAAACTAAAGACTCCAAAATGCTAACTCAGAAAGA AAGAAAAAACCCGTTTTCAATTCTAATGAAACAGCAACAACATTTTTTTTAATTAAAAAAAAAATCATGTTCTTTGTTTTTCTAATAAAA TGTTAGGTTGTTTGGTGAGGTTTTTTTGTTGTTTTTTTCCTTTCTTTGTTTCTTTTCTTTTCCCCCAAACAACCAGATTAAATGCTGAGC GCTTTTAAAATATCAAAACTTGTTCAAGTCATAAAACAACAAAACATAAGTTTTATTTAAAAAAAAAAAAAGAAAGAAAAAATAGTAAAT TCCCAGAAATTCAGTGTTTAGACGAGGGAATTTAATTCCTATTTTGTCCATGTTGGTGATGTACTGTACTTCCCTTCCTTTTCTCTGCAT CCCCCATCACCTCATAGAAGACTCTTTGTTGATCATTGTATGTTAATAATGTATAAAATGGCTATCTTGTAAGCGTGCTGTCCTGGTACT AGTGTAGCGACTTTTTTTCTCCTCTTTCTTCTAGTACATATTGATAGGTATAACATAATTAAGGTTTAAAAAAAATTAGACATAGTTATT CAGATTTAGGACCAGTAAGGATAGAACTTTCTCTTATTTATGAAAAAAAATGCTAATAATTTTGGGGCAGTTTTTTCCTTTAATTATTTT TTTCAATTTCAAGTTTAATTTTATTTTAGCTGATCTGATGTGGTTTCAACTAACCCAAGGTCTCACCATGTTAAAATGCCGGCGGACTCT ACGGCGTTTTGTAGATCCCCCCCCCCCCACCCACTGTGAAGGGGTGCCATACTACCTTAAATGCTAATGCTAGATATGCAAAACTGGATT TTTTTAATTTATTTTTTAAAAGAGGGAGGCATGGTATATTAAAATGATTTTACTAAGAGAAAAAATATTTTTTTAAGAATGCTCAGAAGA AATTGATAATCTGTGTGAATATGTTTTAGATGTTTATATACCTTTTGAAGAGACCCAGTAGCCCATAGCACAAATCTTGTGGAAATCCGA TATGTTTTAATGTGGCTACCTAGGTTTAAGGTTCACGTTAGTCCCCCCATTCCATCTAGAAGTCCATTTTGAAAGATTTTTGTAAATTCT TTTAACACTGATGTTTCAGCCTCGTCTTTGTTTCAGTTAAGCTCAATGGCGAACATGGGAACCACCTTTCGCCTTCCCTGGGGGAGAAAC CCTCTTGGCTGATGGCTTTTCCCCGGAATTATCAAACAGCCACCGGGTGACTTTCTGGCTTCCAGATCCATCTGCCTGAGACCCCCGAAC TCCTCTCCTCCCAAGCAGAGGCGAGTGAGTGGCATTAGCTCCCGGACCCATTCCCGGTCCTAGCTGGGCATGGGGCTGACGGAGATGACC AAGCCTTGGTCTGCTCTCTAGCAGCTTCCACAGACTTGGCTCGTGGCCTTCCTTATATCCACTGGGAACAAACAGCCTCGCGCTCTATAC CAAACAGCCTCGCGCTCTATCCCAGTCGCCCATTAGCTTGATTCAAACAAAGCCCCAGCAGGCCTTTGCGTTTTTATCCTTCATAACCTT CATCTTAATTTGAACTTGTAGCTTGGACTTTAAGGTAGCATGGCTCTATTGCTGTCAATTTACTGTTTCACTGCACAGCAATCACAGCCA GTGAATGTTACACACATCTTGCTAGACTAGTATAAAAATCATTGGGTAATTGTTGGTTCTAATGACCTGAAAGGTGTTCAGTTTTTGTTC TTGGTTTTGTTTTGTTTTTGATTTCTTGGGGGTGGGTTTTGCTTGTTGTTCCTTTTCATTTGGGGGTTTTTGGGGAAAAAATTTATTTTT GGTTCCAAATAGAAAAACAAAACCTATTTTGATCTTTAGTGCAAACGAGGGCTAGGGACTTAGCCTCCTCCACCACCTCCACACTGCTTC ATTCTGCCATTCACTCACTGCAGCATATTCAAGAATAAAGCAATATCGTTTACTACATTTTTTATTGAAGGTCAGCCATGCTTTCTGTAT TATATTGCATATGAAATTGTTTACAAAAGAAACACTAACTCATACTTCTCTTTATTGGTTGCAAGTGGCACGCAGGAACAGAGGGAGAGT GGGGGGCTGGTGGGGGAGGGGAGATTTTTTTTTTTTTTTCTTGAATGTGCTTCGCAAGCCAGGCTATCTTCCAAGGAAGGCAGACAGTGG GAGAGCAGAGGGACTGACTGCAGGCAAGCACATTGAAGAAAGACACTGGCGGGTTTCCCCACCCTCACCCCAAAGCAGAAAACTAGCAGA CGTCAGCTCAGCCCCGTCCTGGGCACAGACACTACACAAGGAGACGCTGGAAGTTAAGCAATACTTTAATACTGTAATATGTTTGTTTTC TTTTTCTTTCTTTTTTTTCTACCAAAAAAAAGTAAGTAAACTAAAACACAAAAACATATAAATAAAATCCATCCCTCTTGTCGGGGACCT GCAGGGGGGCAACCTTAATCCAAACACCTGGCTATCAAATAATCAGAATGTATTGTCTCAGACAGGATTTCAGTTCCGGGAGGCAGGGGC ATGATGGGGGAGGGGGCCGGAGGCTGAGAGACAAAAGTTCCAGAGCCTCCCTCGAAGGTTCTCTACTACTGTATTCTGTACATAATGTAC CATCCCATGTGGAATCTGTGAGTGTCCTCTTAAGTAGCGTGGGCTAGCCAATCTGCCGTTCATGGTGTATTGTAAACTCCGAATTCCATA TGTAATAGGATGCAAGTCTAAGCGTTTCATGTGGACATAAATGTATCTAAATAAAACTTTCCCTAGCACTGTGGCTGACCTCACCCTTAC TTTTATACTTTAGTATGAAACTGATGAGAACTTTGGTAGTGAGTATTTTTTTTATATATATACATATATATGTACTATCTATATATATAT CTCAAGCATCTTTCAGGTCTTTGTGTGTGGCTTTCTTAAAGCCCTGTTGTAAAAAATTACTATGTGGATGGCAGTCTCTCACATCACAGA TGTGGAAAGTATAATTTTATATTTGTATTTTCAAATAAATAAGTTTGTGAAAGGTTTCCATCCTCTACTGTGGTCCAGAAATCAATGTGT >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000322684_chr17_55478740_+_1756nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGACTATTTGCCGGTTTCACAAGACATAATTTTTATCAACTAGCTCTTAAGAGAGGCATAGCAAAGTGGGGGTTGC TACCATTTCTAGAGAGAGAGGACACAGTCCCGGCCTGGGCTGCCCCCGCTCCAGTCAATGCTCACTGAAAGTCTGTCTTAGCTGCCTGTT TGAATGACTGTTCTTTTTCTCATTTTTAATTCTTGGACTCATGTCCTCATTGCTTCACTCAATTAAAAAAAAATTATTCTCCAGTCCCCT CCCACTTTGCTTCTTGTATGCATTGTGACCGACCCCACTTCCTCAGAATGTAACGGGGCCAGAGGGAAACTTCTCACAAACTTCGTAGAG CCTCCTCAGGGGAAGCTAGGAAGAAGACATCAAATGTTTTTAAGTCATGACCAAACAGGCTTGTTGGGGACATATCATGGGGTGAGCTTT GAAGTGCTGGTGGTCCAGAGGGGTTGCAGATACGTGACTTGGAGCACCCGTGTCTTACGATGGACAGTGATAAAGGTGAACACACAGAGA CAGACTATTCTCTAAGAATGTGAGAAACCTGATCTGGAAGAGGAGCTATATAAACACTATCTGACTATCTTTGTCTTTTGGGGCCAGTGG CTGTTGGCATAATCACAAGCCTGTCTGTCTTCGAGAAGGGACAGTGGAGTCATCCAGGTGCTGCCACATGACAGGCACGGTGGGCACCGA TCCACAGTGGGCCCCGCCTTCCCCAGCTCGCCTCCCTGCCTGTGCTGGCCTGGCCTTGCCTGCTGGCACCATTGGAGTAGGAGGGGGTGG AACACAGGGGGCCCATCCTGATCAGGCCCCATCTCAAGGTTGGCACTCCTGCCCATCACCCTTAGAAGGATCTTTTCCCATGGCTTGACT TCCTTCATTTCCCTAACTGAAATACACCCACTCTCTTGGAATAATGACGTACCACTCAGTTGGACCCTCAAGAGTCACTGCTTTGTCTGT GCTGGTAGTTTGTGAGAAGTGACCCGCACGCTTCCATTTGATGCATTTGATGTGAGTGAATCCATACATTTGAATGTCATTGTCCTTGAG >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000442934_chr17_55478740_+_1686nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGGCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAGGCTCCAACCCG GCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAAT TACATAAGTGCGGCCAGCCCACAGCCGGGCTCGGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATAC CATTGAGCAGGTGCTTTCGTTGCCATCTCACTCTGAGAGCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTG TTTAGGTGATGTCCTCAGACCTGGACCCCCACCAGCCTCACTCCCCATCCCAACCAGAGATGGCTCACTTCGGATCGAGGGTTGACTACA TCTCATCATCTCACGAATCTGCTGTAATATAAGACAACAGCTTTTAAATGTGTATATAACCCATGATTTCGGTTTTGTTTTGTTTTGTTT TTCTTGATGGTTTCCCTCTCCCTCCCTCTCTTCCCATTCTCCTTTTAAATCTCTTTGAATCACATTTGGTAGTGATTTTGACTTAGTCCA GTAGTCACATAGCTTTAATATCTAGTTCAAAGCTAACCATAGTATAATTGTTATATTAAGGAGTTATTTTTTCTTAAAACATTTTTTTTT GCTTGTTTTGGTTCTGTTCTCACTTTTAAAGGATGCTGAGATGGTAATATGACTCTCCATATTTTGGTACCAATTCTGAGACTGTATGAA TTTTCAGGTGGAACTTTAGCACACACTGAAGCAAAGTTGTGAAGTGCAGGGCGGGAGGTGGGCGTGAGCTTTCTATTTTGCGTTGTAGAA GAAGTGAGATGTAGTAAGCTAATTAACAGACTTTCTAGCAGTTCTTTTTGTGATGTCTCTTTGTTAATCTGAGTCTATCTATTTTCGGCA >In-frame_KSR1_ENST00000319524_chr17_25783900_+_MSI2_ENST00000579180_chr17_55478740_+_1761nt ATGGATAGAGCAGCGCTGCGCGCGGCGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGGGATGCGGCGGCCGCGGAGGGAGGCGCA GGGGCCGCGGCCAGCCGGGCGCTGCAGCAGTGCGGGCAGCTCCAGAAGCTCATCGACATCTCCATCGGCAGCCTGCGCGGGCTGCGCACC AAGTGCGCTGTGTCCAACGACCTCACCCAGCAGGAGATACGGACCCTGGAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTA TCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCTGATGTTTGATAAAACTACC AACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAAT AAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATG GACGCGTTCATGCTTGGCATGGGGATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTAT GGCTATCAGTTCCCAGACTATTTGCCGGTTTCACAAGACATAATTTTTATCAACTAGCTCTTAAGAGAGGCATAGCAAAGTGGGGGTTGC TACCATTTCTAGAGAGAGAGGACACAGTCCCGGCCTGGGCTGCCCCCGCTCCAGTCAATGCTCACTGAAAGTCTGTCTTAGCTGCCTGTT TGAATGACTGTTCTTTTTCTCATTTTTAATTCTTGGACTCATGTCCTCATTGCTTCACTCAATTAAAAAAAAATTATTCTCCAGTCCCCT CCCACTTTGCTTCTTGTATGCATTGTGACCGACCCCACTTCCTCAGAATGTAACGGGGCCAGAGGGAAACTTCTCACAAACTTCGTAGAG CCTCCTCAGGGGAAGCTAGGAAGAAGACATCAAATGTTTTTAAGTCATGACCAAACAGGCTTGTTGGGGACATATCATGGGGTGAGCTTT GAAGTGCTGGTGGTCCAGAGGGGTTGCAGATACGTGACTTGGAGCACCCGTGTCTTACGATGGACAGTGATAAAGGTGAACACACAGAGA CAGACTATTCTCTAAGAATGTGAGAAACCTGATCTGGAAGAGGAGCTATATAAACACTATCTGACTATCTTTGTCTTTTGGGGCCAGTGG CTGTTGGCATAATCACAAGCCTGTCTGTCTTCGAGAAGGGACAGTGGAGTCATCCAGGTGCTGCCACATGACAGGCACGGTGGGCACCGA TCCACAGTGGGCCCCGCCTTCCCCAGCTCGCCTCCCTGCCTGTGCTGGCCTGGCCTTGCCTGCTGGCACCATTGGAGTAGGAGGGGGTGG AACACAGGGGGCCCATCCTGATCAGGCCCCATCTCAAGGTTGGCACTCCTGCCCATCACCCTTAGAAGGATCTTTTCCCATGGCTTGACT TCCTTCATTTCCCTAACTGAAATACACCCACTCTCTTGGAATAATGACGTACCACTCAGTTGGACCCTCAAGAGTCACTGCTTTGTCTGT GCTGGTAGTTTGTGAGAAGTGACCCGCACGCTTCCATTTGATGCATTTGATGTGAGTGAATCCATACATTTGAATGTCATTGTCCTTGAG |
Top |
FusionGenePPI for KSR1_MSI2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
KSR1 | MAP2K1, BRAF, BRAP, KSR1, MARK3, RAF1, LSP1, HSP90AA1, YWHAE, YWHAB, SDF4, SKAP1, PRMT2, XPO1, VPRBP, NF2, PJA2, KCTD3, KIF13B, ZBTB21, GIGYF1, CGN, LRFN1, DENND1A, SH3PXD2A, RTKN, DENND4C, MAST3, SRGAP2, EIF4E2, SIPA1L1, PPM1H, LPIN3, LIMA1, MAGI1, TESK2, DCLK1, ZNF638, MAPKAP1, NF1, HDAC4, CBY1, SH3RF3, SRSF12, CDC25C, SYDE1, AGAP1, NADK, GIGYF2, CDC25B, CDK16, TANC2, CAMSAP2, PTPN13, RALGPS2, FAM110B, USP21, KIAA1804, RASAL2, TIAM1, ANKRD34A, FAM53C, PHLDB2, RPTOR, PLEKHA7, OSBPL6, KIF1C, MELK, NAV1, DENND4A, FAM110A, GAB2, STARD13, PTPN14, DEPDC1B, HDAC7, CWC25, INPP5E, LARP1, RAB11FIP2, PLEKHA5, MTFR1L, MLLT4, CHEK1, KIF1B, CSNK1A1, TBC1D25, EDC3, HDAC5, TBC1D1, DACT3, PANK2, REEP3, CRTC2, CRTC3, MICALL1, SH3BP4, BAIAP2, FGD6 | MSI2 | GRB2, H2AFX, CUL3, VCAM1, SOX2, TARDBP, RPA3, RPA2, RPA1, HNRNPH2, MEOX2, SUZ12, RNF2, BMI1, MRPL4, ICK, ANXA13, TIMM10B, RBFOX2, FKBP1A, CRIP1, CTSB, EIF3G, HNRNPA1, PABPC1, PABPC4, PIN1, STIP1, UFM1, WDR1, RAB7A, UBE2L3, NTRK1, CDK1, KIF21A, RHOBTB2, MDM2, TP53, ANKRD40, LOXL3, G3BP1, RNF157 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for KSR1_MSI2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for KSR1_MSI2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |