|
Fusion gene ID: 18401 |
FusionGeneSummary for KDM2A_GDPD4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: KDM2A_GDPD4 | Fusion gene ID: 18401 | Hgene | Tgene | Gene symbol | KDM2A | GDPD4 | Gene ID | 22992 | 220032 |
Gene name | lysine demethylase 2A | glycerophosphodiester phosphodiesterase domain containing 4 | |
Synonyms | CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA | GDE6 | |
Cytomap | 11q13.2 | 11q13.5 | |
Type of gene | protein-coding | protein-coding | |
Description | lysine-specific demethylase 2ACXXC-type zinc finger protein 8F-box and leucine-rich repeat protein 11F-box/LRR-repeat protein 11[Histone-H3]-lysine-36 demethylase 1AjmjC domain-containing histone demethylation protein 1Ajumonji C domain-containing h | glycerophosphodiester phosphodiesterase domain-containing protein 4GDPD domain containing proteinglycerophosphodiester phosphodiesterase 6ugpQ | |
Modification date | 20180519 | 20180329 | |
UniProtAcc | Q9Y2K7 | Q6W3E5 | |
Ensembl transtripts involved in fusion gene | ENST00000398645, ENST00000529006, ENST00000526258, ENST00000308783, ENST00000530342, | ENST00000376217, ENST00000315938, ENST00000527489, | |
Fusion gene scores | * DoF score | 24 X 12 X 14=4032 | 9 X 4 X 2=72 |
# samples | 31 | 8 | |
** MAII score | log2(31/4032*10)=-3.70115551822568 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/72*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: KDM2A [Title/Abstract] AND GDPD4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-EW-A6SC-01A | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000398645 | ENST00000376217 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
In-frame | ENST00000398645 | ENST00000315938 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
5CDS-5UTR | ENST00000398645 | ENST00000527489 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
In-frame | ENST00000529006 | ENST00000376217 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
In-frame | ENST00000529006 | ENST00000315938 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
5CDS-5UTR | ENST00000529006 | ENST00000527489 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
3UTR-3CDS | ENST00000526258 | ENST00000376217 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
3UTR-3CDS | ENST00000526258 | ENST00000315938 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
3UTR-5UTR | ENST00000526258 | ENST00000527489 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
intron-3CDS | ENST00000308783 | ENST00000376217 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
intron-3CDS | ENST00000308783 | ENST00000315938 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
intron-5UTR | ENST00000308783 | ENST00000527489 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
intron-3CDS | ENST00000530342 | ENST00000376217 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
intron-3CDS | ENST00000530342 | ENST00000315938 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
intron-5UTR | ENST00000530342 | ENST00000527489 | KDM2A | chr11 | 66983420 | + | GDPD4 | chr11 | 76998465 | - |
Top |
FusionProtFeatures for KDM2A_GDPD4 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
KDM2A | GDPD4 |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 198_457 | -17 | 521 | Domain | Note=GP-PDE |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 198_457 | -17 | 624 | Domain | Note=GP-PDE |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 131_162 | -17 | 521 | Topological domain | Cytoplasmic |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 184_468 | -17 | 521 | Topological domain | Extracellular |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 1_17 | -17 | 521 | Topological domain | Cytoplasmic |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 39_39 | -17 | 521 | Topological domain | Extracellular |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 490_623 | -17 | 521 | Topological domain | Cytoplasmic |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 61_69 | -17 | 521 | Topological domain | Cytoplasmic |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 91_109 | -17 | 521 | Topological domain | Extracellular |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 131_162 | -17 | 624 | Topological domain | Cytoplasmic |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 184_468 | -17 | 624 | Topological domain | Extracellular |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 1_17 | -17 | 624 | Topological domain | Cytoplasmic |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 39_39 | -17 | 624 | Topological domain | Extracellular |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 490_623 | -17 | 624 | Topological domain | Cytoplasmic |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 61_69 | -17 | 624 | Topological domain | Cytoplasmic |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 91_109 | -17 | 624 | Topological domain | Extracellular |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 110_130 | -17 | 521 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 163_183 | -17 | 521 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 18_38 | -17 | 521 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 40_60 | -17 | 521 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 469_489 | -17 | 521 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000315938 | - | -1 | 16 | 70_90 | -17 | 521 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 110_130 | -17 | 624 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 163_183 | -17 | 624 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 18_38 | -17 | 624 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 40_60 | -17 | 624 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 469_489 | -17 | 624 | Transmembrane | Helical |
Tgene | >GDPD4 | chr11:66983420 | chr11:76998465 | ENST00000376217 | - | -1 | 17 | 70_90 | -17 | 624 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 148_316 | -157 | 621 | Domain | JmjC |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 889_936 | -157 | 621 | Domain | Note=F-box |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 148_316 | 229 | 1490 | Domain | JmjC |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 889_936 | 229 | 1490 | Domain | Note=F-box |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 148_316 | 229 | 1163 | Domain | JmjC |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 889_936 | 229 | 1163 | Domain | Note=F-box |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 148_316 | -54 | 724 | Domain | JmjC |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 889_936 | -54 | 724 | Domain | Note=F-box |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 1048_1073 | -157 | 621 | Repeat | Note=LRR 3 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 1074_1103 | -157 | 621 | Repeat | Note=LRR 4 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 1104_1128 | -157 | 621 | Repeat | Note=LRR 5 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 1129_1156 | -157 | 621 | Repeat | Note=LRR 6 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 961_982 | -157 | 621 | Repeat | Note=LRR 1 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 984_1010 | -157 | 621 | Repeat | Note=LRR 2 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 1048_1073 | 229 | 1490 | Repeat | Note=LRR 3 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 1074_1103 | 229 | 1490 | Repeat | Note=LRR 4 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 1104_1128 | 229 | 1490 | Repeat | Note=LRR 5 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 1129_1156 | 229 | 1490 | Repeat | Note=LRR 6 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 961_982 | 229 | 1490 | Repeat | Note=LRR 1 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 984_1010 | 229 | 1490 | Repeat | Note=LRR 2 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 1048_1073 | 229 | 1163 | Repeat | Note=LRR 3 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 1074_1103 | 229 | 1163 | Repeat | Note=LRR 4 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 1104_1128 | 229 | 1163 | Repeat | Note=LRR 5 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 1129_1156 | 229 | 1163 | Repeat | Note=LRR 6 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 961_982 | 229 | 1163 | Repeat | Note=LRR 1 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 984_1010 | 229 | 1163 | Repeat | Note=LRR 2 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 1048_1073 | -54 | 724 | Repeat | Note=LRR 3 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 1074_1103 | -54 | 724 | Repeat | Note=LRR 4 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 1104_1128 | -54 | 724 | Repeat | Note=LRR 5 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 1129_1156 | -54 | 724 | Repeat | Note=LRR 6 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 961_982 | -54 | 724 | Repeat | Note=LRR 1 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 984_1010 | -54 | 724 | Repeat | Note=LRR 2 |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 564_610 | -157 | 621 | Zinc finger | CXXC-type |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000308783 | + | 1 | 10 | 617_678 | -157 | 621 | Zinc finger | PHD-type |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 564_610 | 229 | 1490 | Zinc finger | CXXC-type |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000398645 | + | 8 | 21 | 617_678 | 229 | 1490 | Zinc finger | PHD-type |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 564_610 | 229 | 1163 | Zinc finger | CXXC-type |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000529006 | + | 8 | 21 | 617_678 | 229 | 1163 | Zinc finger | PHD-type |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 564_610 | -54 | 724 | Zinc finger | CXXC-type |
Hgene | >KDM2A | chr11:66983420 | chr11:76998465 | ENST00000530342 | + | 1 | 10 | 617_678 | -54 | 724 | Zinc finger | PHD-type |
Top |
FusionGeneSequence for KDM2A_GDPD4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_KDM2A_ENST00000398645_chr11_66983420_+_GDPD4_ENST00000376217_chr11_76998465_-_229aa MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPD PDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKES >In-frame_KDM2A_ENST00000398645_chr11_66983420_+_GDPD4_ENST00000315938_chr11_76998465_-_229aa MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPD PDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKES >In-frame_KDM2A_ENST00000529006_chr11_66983420_+_GDPD4_ENST00000376217_chr11_76998465_-_229aa MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPD PDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKES >In-frame_KDM2A_ENST00000529006_chr11_66983420_+_GDPD4_ENST00000315938_chr11_76998465_-_229aa MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPD PDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKES |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_KDM2A_ENST00000398645_chr11_66983420_+_GDPD4_ENST00000376217_chr11_76998465_-_687nt ATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTGCGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGAT GAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAA GATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAAAATGCCGGAT CCAGACTTCACTGTGAATGATGTCAAAATGTGTGTGGGGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAA ATGACCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCAC ACCAGGCTGGAGAATATGGTGCAGAGGCCCTCCACGGTGGATTTCATTGACTGGGTAGACAACATGTGGCCAAGGCACTTGAAGGAAAGC CAGACTGAATCAACAAATGCCATCTTGGAGATGCAGTACCCTAAAGTGCAGAAGTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGAC >In-frame_KDM2A_ENST00000398645_chr11_66983420_+_GDPD4_ENST00000315938_chr11_76998465_-_687nt ATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTGCGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGAT GAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAA GATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAAAATGCCGGAT CCAGACTTCACTGTGAATGATGTCAAAATGTGTGTGGGGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAA ATGACCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCAC ACCAGGCTGGAGAATATGGTGCAGAGGCCCTCCACGGTGGATTTCATTGACTGGGTAGACAACATGTGGCCAAGGCACTTGAAGGAAAGC CAGACTGAATCAACAAATGCCATCTTGGAGATGCAGTACCCTAAAGTGCAGAAGTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGAC >In-frame_KDM2A_ENST00000529006_chr11_66983420_+_GDPD4_ENST00000376217_chr11_76998465_-_687nt ATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTGCGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGAT GAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAA GATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAAAATGCCGGAT CCAGACTTCACTGTGAATGATGTCAAAATGTGTGTGGGGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAA ATGACCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCAC ACCAGGCTGGAGAATATGGTGCAGAGGCCCTCCACGGTGGATTTCATTGACTGGGTAGACAACATGTGGCCAAGGCACTTGAAGGAAAGC CAGACTGAATCAACAAATGCCATCTTGGAGATGCAGTACCCTAAAGTGCAGAAGTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGAC >In-frame_KDM2A_ENST00000529006_chr11_66983420_+_GDPD4_ENST00000315938_chr11_76998465_-_687nt ATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTGCGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGAT GAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAA GATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAAAATGCCGGAT CCAGACTTCACTGTGAATGATGTCAAAATGTGTGTGGGGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAA ATGACCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCAC ACCAGGCTGGAGAATATGGTGCAGAGGCCCTCCACGGTGGATTTCATTGACTGGGTAGACAACATGTGGCCAAGGCACTTGAAGGAAAGC CAGACTGAATCAACAAATGCCATCTTGGAGATGCAGTACCCTAAAGTGCAGAAGTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGAC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_KDM2A_ENST00000398645_chr11_66983420_+_GDPD4_ENST00000376217_chr11_76998465_-_4053nt GAGTCTGACGGGTTCAAAATGGCGGCGGCTGCTTCAGCGGCTCCTCCTGTGTGAGGGAAACAACACCCCTCCCCGGCAGCGGCGGCGGCG GCGGCGGCTCTCGGAGCACCTTCCCAGCGGCTGGGCCCGTGGCCGCTCTGTCTTTCCTGGGCAGGGGACGCTCCGGGAGGAGGGGCAACG CCAGGGGGCCCATCCCCCGGAATCCCTCTTCTGCGACTGGGGAGTAGCCGGGGGGCTCGTCCCGCAGCGCGGAGCCAGACCTGAGGGGGA GACGCGAGGGGAGCCAGGGCCCCCATCCCGGCGCGCCGCGCCGCTCCCGCCCTGTCCGCCCCCCGGGGCCGGGGCCCGCGTTCCGGGGGG CCGGGGCGGCGCGGGGAGCCTCGGGCCGGCCGGTCTCAGCTGATCGGCCGCTGCTCCCGCAGGCGACCAGCCCCTGCTGGCCGAGGGCAC GGCGAGGAGGGCGCTCCCTGCGGCCGGGGCCGGCCCGGGGCTCGGGCCCGGGCTGCTGACCGCTGGCCTGGGGGAGGCGGGGGCGCCCCG GGCTCGGCGCCGAGGGGTCGCGCTCCTCTCTCCTGACGCCTCCGACTCCCGGTCTCCAAAGCCAGAAGAGAAGGTTTGATTCAGCAACTG TTTGCTCCCTTTTCCTGGTCGCTCTGACCCTCTCTGGATACTGGGTTGATCCACGGAAAAACCGAAGACGACGTTTGGGATTTAATTATT CCTCTCAGCTTTGGAATCTTTTACTTCTCACTTGGACAAGAACTCAAGAGCAGAATCTCCGTGTTGCAATCTGGTTCCTAAGGAGGAAGA GGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTTCAACAGAAGAGTGAGAGATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAG AGATTGCGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAG AAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAAGATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTG AGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAAAATGCCGGATCCAGACTTCACTGTGAATGATGTCAAAATGTGTGTG GGGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAAATGACCATGGCTCAGTGGACACGCTACTATGAGACC CCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCACACCAGGCTGGAGAATATGGTGCAGAGGCCCTCCACG GTGGATTTCATTGACTGGGTAGACAACATGTGGCCAAGGCACTTGAAGGAAAGCCAGACTGAATCAACAAATGCCATCTTGGAGATGCAG TACCCTAAAGTGCAGAAGTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGACTTTGGTGGTACCTCTGTTTGGTAT CACATCCATCAAGGGGGAAAGAAAGGGTGAATCATGTTTAAGAAGGTCAACAGGATTGAGCACAAGAGGAATAAGACAGAAAAACCAAAA AAGCTTAATCCATGGATTCCACGCATCTTCAACCACAAATGCTTTGTCACCTTCCTTACTGGCTGCTATAGTTGCCTCTGGAAATTCAGA CAATGGGAAAAAACTAAAGTTGGATTTTGTTGCTGCACTTGGAAAGAGCAATTATTTTGCCGTGCCTGGTAATTTCATTTGTCTTGTCTC TGATGTTGCTGTTCCTGTGGATAGAAACATCCAGTGAATACTTTAACTTTGACTGGGTCACTTTTCTAGGAACAGGATACTGGTTTTTCT GGTCTATTTTTATTCTGAGTTTAGCTAGGATCCTGACTGCCTACTCTTCATTGCTGTTGTTACTTGGATTTTTGTTGCTTTGGGAAAGGA TTGAACTATACCTGCACTTGTGTCATAAGATCCTGATTCTGCTAGTGATTCTTCTGTGTGTCATTTTAATGTTCATTATATGCAAATTCT GGAAAGAAAGGTGGCTGGTAGCTGGGCTGTCAATGCAGATCTTTGCTCCCTACGTGCACCTGGTCAGCATAACTGTGATGGTTATCCTTT TCTGGCCTGTGGCCTTCTACGTGGCATGTTTGGAAAGAGAAGTTAGAATGAGAAGATACAGGATGACACATTCTGAGAAAAAAAGACTCA AGCAATGTAATGTAATCACAAGGTTAAGAGGTCTACAAGTGCCTGTTGGATTACCCTTTCTTCTTATCCTTTTAGGTCTCTATTTGATGC CACTGGGGATTTATTCTCCCTGCATTCAGGAGAAGGAGAATTTGGGGCCCAAGCCAACCATCTTTGGACATAGAGGTGCACCCATGTTGG GGCCTGAGAATACCATGATGTCCTTTGAGAAAGCTGTTGAACATGGAGCCCATGGATTGGAGACTGATATACACTTAAGTTATGATCATG TGCCTTTCCTCATGCATGACTTTGACCTGAAAAGAACAACCAATATTGGGGAAGTTCAGCCAGAATCTGCCTGCGAGAACCCTGCCTTCT TCAACTGGGATTTCCTATCGACTCTGAATGCAGGCAAATGGTTTGTAAAACCAGAGCTCAGGCCATTTTACAATATGAAACCTCTATCAG AGGCAGATAAAGAAAGAGCAAGAAATCAGTCAATTCCAACACTAGCTGATTTATTGACACTTGCAGAGAAGGAAAGAAAATTTGTGATAT TTGATCTTCATCGCCCTCCACCAAAACATCCTCTCAGACACACATTTGTCCGCCAAGTAGTAAGCGTGATCCTTGCCTCTAAAATCGAGC AACATCTGATTTTTTGGTTGCCAGCTCATGATAGGCAATACGTCAGGTCCGTGGCTCCTGGTTTTCAGCATGTGGGCCGTTTAGTATCCA TTGAAACCCTTGCTAAAAACAATATCAGTATAATAAATGTTGACTACAAGAAGTTGTTCCCTAATGGGTTAAGAGATTATAAAGCAGCTA ACATCCATATCAACGTATACACCGTCAATGAGCCTTGGCTTTTCTCACTGGCCTGGTGCTCCAGGATTAACTCAGTGACCACAGACAACA TTGGGCTCCTGAGTCAGCTTGATCACCCTCACTTCTTCATGACACCAAAGTTCTATGTGTTCATGTGGCTCCTTGCAGATATCATTTCTG TGCTTTTTATTGTTGCCATATTTTGTTTTCACTGGCGGAGAGAGACTGAAAAAGAAAAATTGTTTGAAACCTCCAGCACTCGCACAGATA CTCAGAGTGGAAATTTGCACATAGCCATGAAACCTCCTGTCCGAGTTGTGGAAGGTCCTTGGACTCTAGCAGCCCTCTACCCGGCTCTAC CCAAGAGTGGAAAGGAACACCAAGGCCATTTCAATTTTGCAGCACCATCCAAGAAACTACTACCTATCAAGAATGCTGTCACACCTTTGA AGCCTGGCAAGCATGAGATTCAACCACCGATGCCCACCGTGGTCTTTGAACTCACCCAAGCACCCACCAGGCAGGCTACAAGTGAGGCTA CCTTTCAAACTACATTGCCCACCCTGAAGGTGGATAAGCCAACCATGCCCTCCATAGAGGTCCCCTATCCTTAAATAAGAGACCTCTAAG AGATCCCCATGGCTGAATACTCCAAATAATCCTATGTCACAATATATTCCATTGCATCTGACATAGCCTTCTGTGTTTCCAAAGAAGAAT TAGCCACATCTCCCCTGCTTCTTCCTCTCTCTGCCTAAGGGTGGTGATGGTGGGGAGTGGTTGATAAAGGCACACAGAAGGGCCACGGAG GCTCTCAGGGGAACCATTGTGCTCTCGCTATCAAGAATGCATCTCAAGGGGCTAGGCAAGGGGAAAACTGCTGTGTGTGGTCTTGGAACT GGTTGCTGTCAGGTTTATCTCATCCTAACACCTCCATAATATTTTCTGCTAAAGGAGTGACTGTGCATATAAGTAAAGGCAACCTCTCAG >In-frame_KDM2A_ENST00000398645_chr11_66983420_+_GDPD4_ENST00000315938_chr11_76998465_-_4084nt GAGTCTGACGGGTTCAAAATGGCGGCGGCTGCTTCAGCGGCTCCTCCTGTGTGAGGGAAACAACACCCCTCCCCGGCAGCGGCGGCGGCG GCGGCGGCTCTCGGAGCACCTTCCCAGCGGCTGGGCCCGTGGCCGCTCTGTCTTTCCTGGGCAGGGGACGCTCCGGGAGGAGGGGCAACG CCAGGGGGCCCATCCCCCGGAATCCCTCTTCTGCGACTGGGGAGTAGCCGGGGGGCTCGTCCCGCAGCGCGGAGCCAGACCTGAGGGGGA GACGCGAGGGGAGCCAGGGCCCCCATCCCGGCGCGCCGCGCCGCTCCCGCCCTGTCCGCCCCCCGGGGCCGGGGCCCGCGTTCCGGGGGG CCGGGGCGGCGCGGGGAGCCTCGGGCCGGCCGGTCTCAGCTGATCGGCCGCTGCTCCCGCAGGCGACCAGCCCCTGCTGGCCGAGGGCAC GGCGAGGAGGGCGCTCCCTGCGGCCGGGGCCGGCCCGGGGCTCGGGCCCGGGCTGCTGACCGCTGGCCTGGGGGAGGCGGGGGCGCCCCG GGCTCGGCGCCGAGGGGTCGCGCTCCTCTCTCCTGACGCCTCCGACTCCCGGTCTCCAAAGCCAGAAGAGAAGGTTTGATTCAGCAACTG TTTGCTCCCTTTTCCTGGTCGCTCTGACCCTCTCTGGATACTGGGTTGATCCACGGAAAAACCGAAGACGACGTTTGGGATTTAATTATT CCTCTCAGCTTTGGAATCTTTTACTTCTCACTTGGACAAGAACTCAAGAGCAGAATCTCCGTGTTGCAATCTGGTTCCTAAGGAGGAAGA GGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTTCAACAGAAGAGTGAGAGATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAG AGATTGCGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAG AAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAAGATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTG AGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAAAATGCCGGATCCAGACTTCACTGTGAATGATGTCAAAATGTGTGTG GGGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAAATGACCATGGCTCAGTGGACACGCTACTATGAGACC CCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCACACCAGGCTGGAGAATATGGTGCAGAGGCCCTCCACG GTGGATTTCATTGACTGGGTAGACAACATGTGGCCAAGGCACTTGAAGGAAAGCCAGACTGAATCAACAAATGCCATCTTGGAGATGCAG TACCCTAAAGTGCAGAAGTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGACTTTGGTGGTACCTCTGTTTGGTAT CACATCCATCAAGGGGGAAAGAAAGGGTGAATCATGTTTAAGAAGGTCAACAGGATTGAGCACAAGAGGAATAAGACAGAAAAACCAAAA AAGCTTAATCCATGGATTCCACGCATCTTCAACCACAAATGCTTTGTCACCTTCCTTACTGGCTGCTATAGTTGCCTCTGGAAATTCAGA CAATGGGAAAAAACTAAAGTTGGATTTTGTTGCTGCACTTGGAAAGAGCAATTATTTTGCCGTGCCTGGTAATTTCATTTGTCTTGTCTC TGATGTTGCTGTTCCTGTGGATAGAAACATCCAGTGAATACTTTAACTTTGACTGGGTCACTTTTCTAGGAACAGGATACTGGTTTTTCT GGTCTATTTTTATTCTGAGTTTAGCTAGGATCCTGACTGCCTACTCTTCATTGCTGTTGTTACTTGGATTTTTGTTGCTTTGGGAAAGGA TTGAACTATACCTGCACTTGTGTCATAAGATCCTGATTCTGCTAGTGATTCTTCTGTGTGTCATTTTAATGTTCATTATATGCAAATTCT GGAAAGAAAGGTGGCTGGTAGCTGGGCTGTCAATGCAGATCTTTGCTCCCTACGTGCACCTGGTCAGCATAACTGTGATGGTTATCCTTT TCTGGCCTGTGGCCTTCTACGTGGCATGTTTGGAAAGAGAAGTTAGAATGAGAAGATACAGGATGACACATTCTGAGAAAAAAAGACTCA AGCAATGTAATGTAATCACAAGGTTAAGAGGTCTACAAGTGCCTGTTGGATTACCCTTTCTTCTTATCCTTTTAGGTCTCTATTTGATGC CACTGGGGATTTATTCTCCCTGCATTCAGGAGAAGGAGAATTTGGGGCCCAAGCCAACCATCTTTGGACATAGAGGTGCACCCATGTTGG GGCCTGAGAATACCATGATGTCCTTTGAGAAAGCTGTTGAACATGGAGCCCATGGATTGGAGACTGATATACACTTAAGTTATGATCATG TGCCTTTCCTCATGCATGACTTTGACCTGAAAAGAACAACCAATATTGGGGAAGTTCAGCCAGAATCTGCCTGCGAGAACCCTGCCTTCT TCAACTGGGATTTCCTATCGACTCTGAATGCAGGCAAATGGTTTGTAAAACCAGAGCTCAGGCCATTTTACAATATGAAACCTCTATCAG AGGCAGATAAAGAAAGAGCAAGAAATCAGTCAATTCCAACACTAGCTGATTTATTGACACTTGCAGAGAAGGAAAGAAAATTTGTGATAT TTGATCTTCATCGCCCTCCACCAAAACATCCTCTCAGACACACATTTGTCCGCCAAGTAGTAAGCGTGATCCTTGCCTCTAAAATCGAGC AACATCTGATTTTTTGGTTGCCAGCTCATGATAGGCAATACGTCAGGTCCGTGGCTCCTGGTTTTCAGCATGTGGGCCGTTTAGTATCCA TTGAAACCCTTGCTAAAAACAATATCAGTATAATAAATGTTGACTACAAGAAGTTGTTCCCTAATGGGTTAAGAGATTATAAAGCAGCTA ACATCCATATCAACGTATACACCGTCAATGAGCCTTGGCTTTTCTCACTGGCCTGGTGCTCCAGGATTAACTCAGTGACCACAGACAACA TTGGGCTCCTGAGTCAGCTTGATCACCCTCACTTCTTCATGACACCAAAGTTCTATGTGTTCATGTGGCTCCTTGCAGATATCATTTCTG TGCTTTTTATTGTTGCCATATTTTGTTTTCACTGGCGGAGAGAGACTGAAAAAGAAAAATTGTTTGAAACCTCCAGCACTCGCACAGATA CTCAGAGTGGAAGTAAGAATGAGGAAGATAGATAGATAGATAGATTTGCACATAGCCATGAAACCTCCTGTCCGAGTTGTGGAAGGTCCT TGGACTCTAGCAGCCCTCTACCCGGCTCTACCCAAGAGTGGAAAGGAACACCAAGGCCATTTCAATTTTGCAGCACCATCCAAGAAACTA CTACCTATCAAGAATGCTGTCACACCTTTGAAGCCTGGCAAGCATGAGATTCAACCACCGATGCCCACCGTGGTCTTTGAACTCACCCAA GCACCCACCAGGCAGGCTACAAGTGAGGCTACCTTTCAAACTACATTGCCCACCCTGAAGGTGGATAAGCCAACCATGCCCTCCATAGAG GTCCCCTATCCTTAAATAAGAGACCTCTAAGAGATCCCCATGGCTGAATACTCCAAATAATCCTATGTCACAATATATTCCATTGCATCT GACATAGCCTTCTGTGTTTCCAAAGAAGAATTAGCCACATCTCCCCTGCTTCTTCCTCTCTCTGCCTAAGGGTGGTGATGGTGGGGAGTG GTTGATAAAGGCACACAGAAGGGCCACGGAGGCTCTCAGGGGAACCATTGTGCTCTCGCTATCAAGAATGCATCTCAAGGGGCTAGGCAA GGGGAAAACTGCTGTGTGTGGTCTTGGAACTGGTTGCTGTCAGGTTTATCTCATCCTAACACCTCCATAATATTTTCTGCTAAAGGAGTG >In-frame_KDM2A_ENST00000529006_chr11_66983420_+_GDPD4_ENST00000376217_chr11_76998465_-_3635nt GCAGGCGACCAGCCCCTGCTGGCCGAGGGCACGGCGAGGAGGGCGCTCCCTGCGGCCGGGGCCGGCCCGGGGCTCGGGCCCGGGCTGCTG ACCGCTGGCCTGGGGGAGGCGGGGGCGCCCCGGGCTCGGCGCCGAGGGGTCGCGCTCCTCTCTCCTGACGCCTCCGACTCCCGGTCTCCA AAGCCAGAAGAGAAGGTTTGATTCAGCAACTGTTTGCTCCCTTTTCCTGGTCGCTCTGACCCTCTCTGGATACTGGGTTGATCCACGGAA AAACCGAAGACGACGTTTGGGATTTAATTATTCCTCTCAGCTTTGGAATCTTTTACTTCTCACTTGGACAAGAACTCAAGAGCAGAATCT CCGTGTTGCAATCTGGTTCCTAAGGAGGAAGAGGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTTCAACAGAAGAGTGAGAGATGG AACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTGCGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAA TTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAAGATT TTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAAAATGCCGGATCCAG ACTTCACTGTGAATGATGTCAAAATGTGTGTGGGGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAAATGA CCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCACACCA GGCTGGAGAATATGGTGCAGAGGCCCTCCACGGTGGATTTCATTGACTGGGTAGACAACATGTGGCCAAGGCACTTGAAGGAAAGCCAGA CTGAATCAACAAATGCCATCTTGGAGATGCAGTACCCTAAAGTGCAGAAGTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCC ATGTGGACTTTGGTGGTACCTCTGTTTGGTATCACATCCATCAAGGGGGAAAGAAAGGGTGAATCATGTTTAAGAAGGTCAACAGGATTG AGCACAAGAGGAATAAGACAGAAAAACCAAAAAAGCTTAATCCATGGATTCCACGCATCTTCAACCACAAATGCTTTGTCACCTTCCTTA CTGGCTGCTATAGTTGCCTCTGGAAATTCAGACAATGGGAAAAAACTAAAGTTGGATTTTGTTGCTGCACTTGGAAAGAGCAATTATTTT GCCGTGCCTGGTAATTTCATTTGTCTTGTCTCTGATGTTGCTGTTCCTGTGGATAGAAACATCCAGTGAATACTTTAACTTTGACTGGGT CACTTTTCTAGGAACAGGATACTGGTTTTTCTGGTCTATTTTTATTCTGAGTTTAGCTAGGATCCTGACTGCCTACTCTTCATTGCTGTT GTTACTTGGATTTTTGTTGCTTTGGGAAAGGATTGAACTATACCTGCACTTGTGTCATAAGATCCTGATTCTGCTAGTGATTCTTCTGTG TGTCATTTTAATGTTCATTATATGCAAATTCTGGAAAGAAAGGTGGCTGGTAGCTGGGCTGTCAATGCAGATCTTTGCTCCCTACGTGCA CCTGGTCAGCATAACTGTGATGGTTATCCTTTTCTGGCCTGTGGCCTTCTACGTGGCATGTTTGGAAAGAGAAGTTAGAATGAGAAGATA CAGGATGACACATTCTGAGAAAAAAAGACTCAAGCAATGTAATGTAATCACAAGGTTAAGAGGTCTACAAGTGCCTGTTGGATTACCCTT TCTTCTTATCCTTTTAGGTCTCTATTTGATGCCACTGGGGATTTATTCTCCCTGCATTCAGGAGAAGGAGAATTTGGGGCCCAAGCCAAC CATCTTTGGACATAGAGGTGCACCCATGTTGGGGCCTGAGAATACCATGATGTCCTTTGAGAAAGCTGTTGAACATGGAGCCCATGGATT GGAGACTGATATACACTTAAGTTATGATCATGTGCCTTTCCTCATGCATGACTTTGACCTGAAAAGAACAACCAATATTGGGGAAGTTCA GCCAGAATCTGCCTGCGAGAACCCTGCCTTCTTCAACTGGGATTTCCTATCGACTCTGAATGCAGGCAAATGGTTTGTAAAACCAGAGCT CAGGCCATTTTACAATATGAAACCTCTATCAGAGGCAGATAAAGAAAGAGCAAGAAATCAGTCAATTCCAACACTAGCTGATTTATTGAC ACTTGCAGAGAAGGAAAGAAAATTTGTGATATTTGATCTTCATCGCCCTCCACCAAAACATCCTCTCAGACACACATTTGTCCGCCAAGT AGTAAGCGTGATCCTTGCCTCTAAAATCGAGCAACATCTGATTTTTTGGTTGCCAGCTCATGATAGGCAATACGTCAGGTCCGTGGCTCC TGGTTTTCAGCATGTGGGCCGTTTAGTATCCATTGAAACCCTTGCTAAAAACAATATCAGTATAATAAATGTTGACTACAAGAAGTTGTT CCCTAATGGGTTAAGAGATTATAAAGCAGCTAACATCCATATCAACGTATACACCGTCAATGAGCCTTGGCTTTTCTCACTGGCCTGGTG CTCCAGGATTAACTCAGTGACCACAGACAACATTGGGCTCCTGAGTCAGCTTGATCACCCTCACTTCTTCATGACACCAAAGTTCTATGT GTTCATGTGGCTCCTTGCAGATATCATTTCTGTGCTTTTTATTGTTGCCATATTTTGTTTTCACTGGCGGAGAGAGACTGAAAAAGAAAA ATTGTTTGAAACCTCCAGCACTCGCACAGATACTCAGAGTGGAAATTTGCACATAGCCATGAAACCTCCTGTCCGAGTTGTGGAAGGTCC TTGGACTCTAGCAGCCCTCTACCCGGCTCTACCCAAGAGTGGAAAGGAACACCAAGGCCATTTCAATTTTGCAGCACCATCCAAGAAACT ACTACCTATCAAGAATGCTGTCACACCTTTGAAGCCTGGCAAGCATGAGATTCAACCACCGATGCCCACCGTGGTCTTTGAACTCACCCA AGCACCCACCAGGCAGGCTACAAGTGAGGCTACCTTTCAAACTACATTGCCCACCCTGAAGGTGGATAAGCCAACCATGCCCTCCATAGA GGTCCCCTATCCTTAAATAAGAGACCTCTAAGAGATCCCCATGGCTGAATACTCCAAATAATCCTATGTCACAATATATTCCATTGCATC TGACATAGCCTTCTGTGTTTCCAAAGAAGAATTAGCCACATCTCCCCTGCTTCTTCCTCTCTCTGCCTAAGGGTGGTGATGGTGGGGAGT GGTTGATAAAGGCACACAGAAGGGCCACGGAGGCTCTCAGGGGAACCATTGTGCTCTCGCTATCAAGAATGCATCTCAAGGGGCTAGGCA AGGGGAAAACTGCTGTGTGTGGTCTTGGAACTGGTTGCTGTCAGGTTTATCTCATCCTAACACCTCCATAATATTTTCTGCTAAAGGAGT >In-frame_KDM2A_ENST00000529006_chr11_66983420_+_GDPD4_ENST00000315938_chr11_76998465_-_3666nt GCAGGCGACCAGCCCCTGCTGGCCGAGGGCACGGCGAGGAGGGCGCTCCCTGCGGCCGGGGCCGGCCCGGGGCTCGGGCCCGGGCTGCTG ACCGCTGGCCTGGGGGAGGCGGGGGCGCCCCGGGCTCGGCGCCGAGGGGTCGCGCTCCTCTCTCCTGACGCCTCCGACTCCCGGTCTCCA AAGCCAGAAGAGAAGGTTTGATTCAGCAACTGTTTGCTCCCTTTTCCTGGTCGCTCTGACCCTCTCTGGATACTGGGTTGATCCACGGAA AAACCGAAGACGACGTTTGGGATTTAATTATTCCTCTCAGCTTTGGAATCTTTTACTTCTCACTTGGACAAGAACTCAAGAGCAGAATCT CCGTGTTGCAATCTGGTTCCTAAGGAGGAAGAGGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTTCAACAGAAGAGTGAGAGATGG AACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTGCGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAA TTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAAGATT TTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAAAATGCCGGATCCAG ACTTCACTGTGAATGATGTCAAAATGTGTGTGGGGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAAATGA CCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCACACCA GGCTGGAGAATATGGTGCAGAGGCCCTCCACGGTGGATTTCATTGACTGGGTAGACAACATGTGGCCAAGGCACTTGAAGGAAAGCCAGA CTGAATCAACAAATGCCATCTTGGAGATGCAGTACCCTAAAGTGCAGAAGTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCC ATGTGGACTTTGGTGGTACCTCTGTTTGGTATCACATCCATCAAGGGGGAAAGAAAGGGTGAATCATGTTTAAGAAGGTCAACAGGATTG AGCACAAGAGGAATAAGACAGAAAAACCAAAAAAGCTTAATCCATGGATTCCACGCATCTTCAACCACAAATGCTTTGTCACCTTCCTTA CTGGCTGCTATAGTTGCCTCTGGAAATTCAGACAATGGGAAAAAACTAAAGTTGGATTTTGTTGCTGCACTTGGAAAGAGCAATTATTTT GCCGTGCCTGGTAATTTCATTTGTCTTGTCTCTGATGTTGCTGTTCCTGTGGATAGAAACATCCAGTGAATACTTTAACTTTGACTGGGT CACTTTTCTAGGAACAGGATACTGGTTTTTCTGGTCTATTTTTATTCTGAGTTTAGCTAGGATCCTGACTGCCTACTCTTCATTGCTGTT GTTACTTGGATTTTTGTTGCTTTGGGAAAGGATTGAACTATACCTGCACTTGTGTCATAAGATCCTGATTCTGCTAGTGATTCTTCTGTG TGTCATTTTAATGTTCATTATATGCAAATTCTGGAAAGAAAGGTGGCTGGTAGCTGGGCTGTCAATGCAGATCTTTGCTCCCTACGTGCA CCTGGTCAGCATAACTGTGATGGTTATCCTTTTCTGGCCTGTGGCCTTCTACGTGGCATGTTTGGAAAGAGAAGTTAGAATGAGAAGATA CAGGATGACACATTCTGAGAAAAAAAGACTCAAGCAATGTAATGTAATCACAAGGTTAAGAGGTCTACAAGTGCCTGTTGGATTACCCTT TCTTCTTATCCTTTTAGGTCTCTATTTGATGCCACTGGGGATTTATTCTCCCTGCATTCAGGAGAAGGAGAATTTGGGGCCCAAGCCAAC CATCTTTGGACATAGAGGTGCACCCATGTTGGGGCCTGAGAATACCATGATGTCCTTTGAGAAAGCTGTTGAACATGGAGCCCATGGATT GGAGACTGATATACACTTAAGTTATGATCATGTGCCTTTCCTCATGCATGACTTTGACCTGAAAAGAACAACCAATATTGGGGAAGTTCA GCCAGAATCTGCCTGCGAGAACCCTGCCTTCTTCAACTGGGATTTCCTATCGACTCTGAATGCAGGCAAATGGTTTGTAAAACCAGAGCT CAGGCCATTTTACAATATGAAACCTCTATCAGAGGCAGATAAAGAAAGAGCAAGAAATCAGTCAATTCCAACACTAGCTGATTTATTGAC ACTTGCAGAGAAGGAAAGAAAATTTGTGATATTTGATCTTCATCGCCCTCCACCAAAACATCCTCTCAGACACACATTTGTCCGCCAAGT AGTAAGCGTGATCCTTGCCTCTAAAATCGAGCAACATCTGATTTTTTGGTTGCCAGCTCATGATAGGCAATACGTCAGGTCCGTGGCTCC TGGTTTTCAGCATGTGGGCCGTTTAGTATCCATTGAAACCCTTGCTAAAAACAATATCAGTATAATAAATGTTGACTACAAGAAGTTGTT CCCTAATGGGTTAAGAGATTATAAAGCAGCTAACATCCATATCAACGTATACACCGTCAATGAGCCTTGGCTTTTCTCACTGGCCTGGTG CTCCAGGATTAACTCAGTGACCACAGACAACATTGGGCTCCTGAGTCAGCTTGATCACCCTCACTTCTTCATGACACCAAAGTTCTATGT GTTCATGTGGCTCCTTGCAGATATCATTTCTGTGCTTTTTATTGTTGCCATATTTTGTTTTCACTGGCGGAGAGAGACTGAAAAAGAAAA ATTGTTTGAAACCTCCAGCACTCGCACAGATACTCAGAGTGGAAGTAAGAATGAGGAAGATAGATAGATAGATAGATTTGCACATAGCCA TGAAACCTCCTGTCCGAGTTGTGGAAGGTCCTTGGACTCTAGCAGCCCTCTACCCGGCTCTACCCAAGAGTGGAAAGGAACACCAAGGCC ATTTCAATTTTGCAGCACCATCCAAGAAACTACTACCTATCAAGAATGCTGTCACACCTTTGAAGCCTGGCAAGCATGAGATTCAACCAC CGATGCCCACCGTGGTCTTTGAACTCACCCAAGCACCCACCAGGCAGGCTACAAGTGAGGCTACCTTTCAAACTACATTGCCCACCCTGA AGGTGGATAAGCCAACCATGCCCTCCATAGAGGTCCCCTATCCTTAAATAAGAGACCTCTAAGAGATCCCCATGGCTGAATACTCCAAAT AATCCTATGTCACAATATATTCCATTGCATCTGACATAGCCTTCTGTGTTTCCAAAGAAGAATTAGCCACATCTCCCCTGCTTCTTCCTC TCTCTGCCTAAGGGTGGTGATGGTGGGGAGTGGTTGATAAAGGCACACAGAAGGGCCACGGAGGCTCTCAGGGGAACCATTGTGCTCTCG CTATCAAGAATGCATCTCAAGGGGCTAGGCAAGGGGAAAACTGCTGTGTGTGGTCTTGGAACTGGTTGCTGTCAGGTTTATCTCATCCTA |
Top |
FusionGenePPI for KDM2A_GDPD4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
KDM2A | RELA, FOS, BCL6, ELAVL1, KIAA0368, HIST2H3C, SKP1, HIST3H3, SMAD7, SMAD3, ZNF512B, MPG, UBE2G2, RB1, E2F1, EED, ACTR1B, ARHGEF7, PSMB3, RANGAP1, PPP1R2, STAG2, KRAS, HIST1H2BG, RAB5C, REEP5, CBX4, KIF20B, RBPJ, ATM, CGB2, TRIM25, UHRF2 | GDPD4 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for KDM2A_GDPD4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for KDM2A_GDPD4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |