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Fusion gene ID: 18041 |
FusionGeneSummary for JAZF1_CPT1C |
Fusion gene summary |
Fusion gene information | Fusion gene name: JAZF1_CPT1C | Fusion gene ID: 18041 | Hgene | Tgene | Gene symbol | JAZF1 | CPT1C | Gene ID | 221895 | 126129 |
Gene name | JAZF zinc finger 1 | carnitine palmitoyltransferase 1C | |
Synonyms | TIP27|ZNF802 | CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73 | |
Cytomap | 7p15.2-p15.1 | 19q13.33 | |
Type of gene | protein-coding | protein-coding | |
Description | juxtaposed with another zinc finger protein 1TAK1-interacting protein 27juxtaposed with another zinc finger gene 1zinc finger protein 802 | carnitine O-palmitoyltransferase 1, brain isoformcarnitine O-palmitoyltransferase I, brain isoformcarnitine palmitoyltransferase I related C | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q86VZ6 | Q8TCG5 | |
Ensembl transtripts involved in fusion gene | ENST00000283928, ENST00000466516, | ENST00000323446, ENST00000392518, ENST00000598293, ENST00000354199, ENST00000405931, ENST00000598714, | |
Fusion gene scores | * DoF score | 13 X 7 X 7=637 | 1 X 1 X 1=1 |
# samples | 13 | 1 | |
** MAII score | log2(13/637*10)=-2.29278174922785 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: JAZF1 [Title/Abstract] AND CPT1C [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | JAZF1 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 15302918 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | GBM | TCGA-32-1970-01A | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000283928 | ENST00000323446 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
In-frame | ENST00000283928 | ENST00000392518 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
In-frame | ENST00000283928 | ENST00000598293 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
In-frame | ENST00000283928 | ENST00000354199 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
In-frame | ENST00000283928 | ENST00000405931 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
5CDS-intron | ENST00000283928 | ENST00000598714 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
intron-3CDS | ENST00000466516 | ENST00000323446 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
intron-3CDS | ENST00000466516 | ENST00000392518 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
intron-3CDS | ENST00000466516 | ENST00000598293 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
intron-3CDS | ENST00000466516 | ENST00000354199 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
intron-3CDS | ENST00000466516 | ENST00000405931 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
intron-intron | ENST00000466516 | ENST00000598714 | JAZF1 | chr7 | 28220082 | - | CPT1C | chr19 | 50211980 | + |
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FusionProtFeatures for JAZF1_CPT1C |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
JAZF1 | CPT1C |
Acts as a transcriptional corepressor of orphan nuclearreceptor NR2C2 (PubMed:15302918). Inhibits expression of thegluconeogenesis enzyme PCK2 through inhibition of NR2C2 activity(By similarity). Also involved in transcriptional activation ofNAMPT by promoting expression of PPARA and PPARD (By similarity).Plays a role in lipid metabolism by suppressing lipogenesis,increasing lipolysis and decreasing lipid accumulation in adiposetissue (By similarity). Plays a role in glucose homeostasis byimproving glucose metabolism and insulin sensitivity (Bysimilarity). {ECO:0000250|UniProtKB:Q80ZQ5,ECO:0000269|PubMed:15302918}. | May play a role in lipid metabolic process.{ECO:0000269|PubMed:25751282}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | JAZF1 | chr7:28220082 | chr19:50211980 | ENST00000283928 | - | 1 | 5 | 12_37 | 38 | 244 | Zinc finger | Note=C2H2-type 1 |
Tgene | >CPT1C | chr7:28220082 | chr19:50211980 | ENST00000323446 | + | 11 | 19 | 552_564 | 483 | 804 | Region | Coenzyme A binding |
Tgene | >CPT1C | chr7:28220082 | chr19:50211980 | ENST00000354199 | + | 12 | 18 | 552_564 | 483 | 715 | Region | Coenzyme A binding |
Tgene | >CPT1C | chr7:28220082 | chr19:50211980 | ENST00000392518 | + | 12 | 20 | 552_564 | 483 | 804 | Region | Coenzyme A binding |
Tgene | >CPT1C | chr7:28220082 | chr19:50211980 | ENST00000405931 | + | 12 | 20 | 552_564 | 472 | 793 | Region | Coenzyme A binding |
Tgene | >CPT1C | chr7:28220082 | chr19:50211980 | ENST00000598293 | + | 12 | 20 | 552_564 | 483 | 804 | Region | Coenzyme A binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >JAZF1 | chr7:28220082 | chr19:50211980 | ENST00000283928 | - | 1 | 5 | 173_198 | 38 | 244 | Zinc finger | Note=C2H2-type 2 |
Hgene | >JAZF1 | chr7:28220082 | chr19:50211980 | ENST00000283928 | - | 1 | 5 | 208_230 | 38 | 244 | Zinc finger | Note=C2H2-type 3%3B degenerate |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000323446 | + | 11 | 19 | 127_803 | 483 | 804 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000323446 | + | 11 | 19 | 1_52 | 483 | 804 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000323446 | + | 11 | 19 | 76_103 | 483 | 804 | Topological domain | Mitochondrial intermembrane |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000354199 | + | 12 | 18 | 127_803 | 483 | 715 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000354199 | + | 12 | 18 | 1_52 | 483 | 715 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000354199 | + | 12 | 18 | 76_103 | 483 | 715 | Topological domain | Mitochondrial intermembrane |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000392518 | + | 12 | 20 | 127_803 | 483 | 804 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000392518 | + | 12 | 20 | 1_52 | 483 | 804 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000392518 | + | 12 | 20 | 76_103 | 483 | 804 | Topological domain | Mitochondrial intermembrane |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000405931 | + | 12 | 20 | 127_803 | 472 | 793 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000405931 | + | 12 | 20 | 1_52 | 472 | 793 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000405931 | + | 12 | 20 | 76_103 | 472 | 793 | Topological domain | Mitochondrial intermembrane |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000598293 | + | 12 | 20 | 127_803 | 483 | 804 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000598293 | + | 12 | 20 | 1_52 | 483 | 804 | Topological domain | Cytoplasmic |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000598293 | + | 12 | 20 | 76_103 | 483 | 804 | Topological domain | Mitochondrial intermembrane |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000323446 | + | 11 | 19 | 104_126 | 483 | 804 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000323446 | + | 11 | 19 | 53_75 | 483 | 804 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000354199 | + | 12 | 18 | 104_126 | 483 | 715 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000354199 | + | 12 | 18 | 53_75 | 483 | 715 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000392518 | + | 12 | 20 | 104_126 | 483 | 804 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000392518 | + | 12 | 20 | 53_75 | 483 | 804 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000405931 | + | 12 | 20 | 104_126 | 472 | 793 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000405931 | + | 12 | 20 | 53_75 | 472 | 793 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000598293 | + | 12 | 20 | 104_126 | 483 | 804 | Transmembrane | Helical |
Tgene | CPT1C | chr7:28220082 | chr19:50211980 | ENST00000598293 | + | 12 | 20 | 53_75 | 483 | 804 | Transmembrane | Helical |
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FusionGeneSequence for JAZF1_CPT1C |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000323446_chr19_50211980_+_359aa MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIVHSGYRMLSAGLLNRRPLQGAPGPHTTPAPAAAMGPSRPDPLLHLSSPEGSQ DLVXKCRLPCRSILPIWQELHPTLPPLFRQLHPDRLATGPLPGQGSILPDLXVGHDSLIPGRPDGDGAVLHEGGLQLCQGHGGQREDGPT VPRPVPRGSGQAPGSAEGSHERAGSXPPPVCAVHRVPIPPPAVALPDPGPFGAVAAVHQPDPCSANASVXRPQLPGLCFLRRWIRACXXP >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000392518_chr19_50211980_+_359aa MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIVHSGYRMLSAGLLNRRPLQGAPGPHTTPAPAAAMGPSRPDPLLHLSSPEGSQ DLVXKCRLPCRSILPIWQELHPTLPPLFRQLHPDRLATGPLPGQGSILPDLXVGHDSLIPGRPDGDGAVLHEGGLQLCQGHGGQREDGPT VPRPVPRGSGQAPGSAEGSHERAGSXPPPVCAVHRVPIPPPAVALPDPGPFGAVAAVHQPDPCSANASVXRPQLPGLCFLRRWIRACXXP >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000598293_chr19_50211980_+_359aa MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIVHSGYRMLSAGLLNRRPLQGAPGPHTTPAPAAAMGPSRPDPLLHLSSPEGSQ DLVXKCRLPCRSILPIWQELHPTLPPLFRQLHPDRLATGPLPGQGSILPDLXVGHDSLIPGRPDGDGAVLHEGGLQLCQGHGGQREDGPT VPRPVPRGSGQAPGSAEGSHERAGSXPPPVCAVHRVPIPPPAVALPDPGPFGAVAAVHQPDPCSANASVXRPQLPGLCFLRRWIRACXXP >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000354199_chr19_50211980_+_270aa MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIVHSGYRMLSAGLLNRRPLQGAPGPHTTPAPAAAMGPSRPDPLLHLSSPEGSQ DLVXKCRLPCRSILPIWQELHPTLPPLFRQLHPDRLATGPLPGQGSILPDLXVGHDSLIPGRPDGDGAVLHEGGLQLCQGHGGQREDGXX PWLWCFLYLHGGWHDHLPHLQQKIKHKNGFPQAGAAHXGRTAGCGLPVPGGTAFXAPVQRVREGELQAQVWISLPPDWGLQGLNDIHRLL >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000405931_chr19_50211980_+_359aa MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIVHSGYRMLSAGLLNRRPLQGAPGPHTTPAPAAAMGPSRPDPLLHLSSPEGSQ DLVXKCRLPCRSILPIWQELHPTLPPLFRQLHPDRLATGPLPGQGSILPDLXVGHDSLIPGRPDGDGAVLHEGGLQLCQGHGGQREDGPT VPRPVPRGSGQAPGSAEGSHERAGSXPPPVCAVHRVPIPPPAVALPDPGPFGAVAAVHQPDPCSANASVXRPQLPGLCFLRRWIRACXXP |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000323446_chr19_50211980_+_1078nt ATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATC GAGCACATCGAGGACAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCC GGACCCCACACTACCCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAA GATCTTGTCTGAAAATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAG CTTCATCCAGATCGCCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCT GGAAGGCCGGACGGAGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGACCCACA GTGCCTCGCCCTGTTCCGCGTGGCAGTGGACAAGCACCAGGCTCTGCTGAAGGCAGCCATGAGCGGGCAGGGAGTTGACCGCCACCTGTT TGCGCTGTACATCGTGTCCCGATTCCTCCACCTGCAGTCGCCCTTCCTGACCCAGGTCCATTCGGAGCAGTGGCAGCTGTCCACCAGCCA GATCCCTGTTCAGCAAATGCATCTGTTTGACGTCCACAATTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGCTGATGACCA TGGTTATGGTGTTTCTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCA CAGGCTGGGGCAGCACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTC >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000392518_chr19_50211980_+_1078nt ATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATC GAGCACATCGAGGACAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCC GGACCCCACACTACCCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAA GATCTTGTCTGAAAATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAG CTTCATCCAGATCGCCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCT GGAAGGCCGGACGGAGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGACCCACA GTGCCTCGCCCTGTTCCGCGTGGCAGTGGACAAGCACCAGGCTCTGCTGAAGGCAGCCATGAGCGGGCAGGGAGTTGACCGCCACCTGTT TGCGCTGTACATCGTGTCCCGATTCCTCCACCTGCAGTCGCCCTTCCTGACCCAGGTCCATTCGGAGCAGTGGCAGCTGTCCACCAGCCA GATCCCTGTTCAGCAAATGCATCTGTTTGACGTCCACAATTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGCTGATGACCA TGGTTATGGTGTTTCTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCA CAGGCTGGGGCAGCACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTC >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000598293_chr19_50211980_+_1078nt ATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATC GAGCACATCGAGGACAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCC GGACCCCACACTACCCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAA GATCTTGTCTGAAAATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAG CTTCATCCAGATCGCCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCT GGAAGGCCGGACGGAGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGACCCACA GTGCCTCGCCCTGTTCCGCGTGGCAGTGGACAAGCACCAGGCTCTGCTGAAGGCAGCCATGAGCGGGCAGGGAGTTGACCGCCACCTGTT TGCGCTGTACATCGTGTCCCGATTCCTCCACCTGCAGTCGCCCTTCCTGACCCAGGTCCATTCGGAGCAGTGGCAGCTGTCCACCAGCCA GATCCCTGTTCAGCAAATGCATCTGTTTGACGTCCACAATTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGCTGATGACCA TGGTTATGGTGTTTCTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCA CAGGCTGGGGCAGCACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTC >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000354199_chr19_50211980_+_811nt ATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATC GAGCACATCGAGGACAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCC GGACCCCACACTACCCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAA GATCTTGTCTGAAAATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAG CTTCATCCAGATCGCCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCT GGAAGGCCGGACGGAGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGCTGATGA CCATGGTTATGGTGTTTCTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTC CCACAGGCTGGGGCAGCACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGG GTCAGGGAAGGAGAACTCCAGGCACAGGTGTGGATTTCTCTCCCGCCAGACTGGGGCCTCCAAGGCCTCAATGACATCCACCGACTTCTG >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000405931_chr19_50211980_+_1078nt ATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATC GAGCACATCGAGGACAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCC GGACCCCACACTACCCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAA GATCTTGTCTGAAAATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAG CTTCATCCAGATCGCCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCT GGAAGGCCGGACGGAGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGACCCACA GTGCCTCGCCCTGTTCCGCGTGGCAGTGGACAAGCACCAGGCTCTGCTGAAGGCAGCCATGAGCGGGCAGGGAGTTGACCGCCACCTGTT TGCGCTGTACATCGTGTCCCGATTCCTCCACCTGCAGTCGCCCTTCCTGACCCAGGTCCATTCGGAGCAGTGGCAGCTGTCCACCAGCCA GATCCCTGTTCAGCAAATGCATCTGTTTGACGTCCACAATTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGCTGATGACCA TGGTTATGGTGTTTCTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCA CAGGCTGGGGCAGCACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000323446_chr19_50211980_+_1370nt ATCTCTCTCGCCCCCTCTCCCTCCGTCCCGTCCTCGCCGCTCCCCTCACCCCGCCTCTCTCCCCCTCCCCCAGCCCCTCCTCTCCTCACC CCACCCGGCCTCCCTCCCTCCCTCGCCCGCCCGGCGCTCGCAGAGCCGACACCAGGGGGGCTCTCGATGTAGCACCATGACAGGCATCGC CGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATCGAGCACATCGAGGA CAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCCGGACCCCACACTAC CCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAAGATCTTGTCTGAAA ATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAGCTTCATCCAGATCG CCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCTGGAAGGCCGGACGG AGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGACCCACAGTGCCTCGCCCTGT TCCGCGTGGCAGTGGACAAGCACCAGGCTCTGCTGAAGGCAGCCATGAGCGGGCAGGGAGTTGACCGCCACCTGTTTGCGCTGTACATCG TGTCCCGATTCCTCCACCTGCAGTCGCCCTTCCTGACCCAGGTCCATTCGGAGCAGTGGCAGCTGTCCACCAGCCAGATCCCTGTTCAGC AAATGCATCTGTTTGACGTCCACAATTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGCTGATGACCATGGTTATGGTGTTT CTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCACAGGCTGGGGCAGC ACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTCAGGGAAGGAGAACT CCAGGCACAGGTGTGGATTTCTCTCCCGCCAGACTGGGGCCTCCAAGGCCTCAATGACATCCACCGACTTCTGACTCCTTCCAGCAGGCA GCTGGCCTCTCCAAGGAATAAGGGTGAAATTGCCACAGCTGGCTGACACAGGACAGGGGCAACTGGTTTGGCAACCCCACATCCAGGCCA >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000392518_chr19_50211980_+_1370nt ATCTCTCTCGCCCCCTCTCCCTCCGTCCCGTCCTCGCCGCTCCCCTCACCCCGCCTCTCTCCCCCTCCCCCAGCCCCTCCTCTCCTCACC CCACCCGGCCTCCCTCCCTCCCTCGCCCGCCCGGCGCTCGCAGAGCCGACACCAGGGGGGCTCTCGATGTAGCACCATGACAGGCATCGC CGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATCGAGCACATCGAGGA CAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCCGGACCCCACACTAC CCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAAGATCTTGTCTGAAA ATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAGCTTCATCCAGATCG CCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCTGGAAGGCCGGACGG AGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGACCCACAGTGCCTCGCCCTGT TCCGCGTGGCAGTGGACAAGCACCAGGCTCTGCTGAAGGCAGCCATGAGCGGGCAGGGAGTTGACCGCCACCTGTTTGCGCTGTACATCG TGTCCCGATTCCTCCACCTGCAGTCGCCCTTCCTGACCCAGGTCCATTCGGAGCAGTGGCAGCTGTCCACCAGCCAGATCCCTGTTCAGC AAATGCATCTGTTTGACGTCCACAATTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGCTGATGACCATGGTTATGGTGTTT CTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCACAGGCTGGGGCAGC ACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTCAGGGAAGGAGAACT CCAGGCACAGGTGTGGATTTCTCTCCCGCCAGACTGGGGCCTCCAAGGCCTCAATGACATCCACCGACTTCTGACTCCTTCCAGCAGGCA GCTGGCCTCTCCAAGGAATAAGGGTGAAATTGCCACAGCTGGCTGACACAGGACAGGGGCAACTGGTTTGGCAACCCCACATCCAGGCCA >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000598293_chr19_50211980_+_1311nt ATCTCTCTCGCCCCCTCTCCCTCCGTCCCGTCCTCGCCGCTCCCCTCACCCCGCCTCTCTCCCCCTCCCCCAGCCCCTCCTCTCCTCACC CCACCCGGCCTCCCTCCCTCCCTCGCCCGCCCGGCGCTCGCAGAGCCGACACCAGGGGGGCTCTCGATGTAGCACCATGACAGGCATCGC CGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATCGAGCACATCGAGGA CAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCCGGACCCCACACTAC CCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAAGATCTTGTCTGAAA ATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAGCTTCATCCAGATCG CCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCTGGAAGGCCGGACGG AGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGACCCACAGTGCCTCGCCCTGT TCCGCGTGGCAGTGGACAAGCACCAGGCTCTGCTGAAGGCAGCCATGAGCGGGCAGGGAGTTGACCGCCACCTGTTTGCGCTGTACATCG TGTCCCGATTCCTCCACCTGCAGTCGCCCTTCCTGACCCAGGTCCATTCGGAGCAGTGGCAGCTGTCCACCAGCCAGATCCCTGTTCAGC AAATGCATCTGTTTGACGTCCACAATTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGCTGATGACCATGGTTATGGTGTTT CTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCACAGGCTGGGGCAGC ACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTCAGGGAAGGAGAACT CCAGGCACAGGTGTGGATTTCTCTCCCGCCAGACTGGGGCCTCCAAGGCCTCAATGACATCCACCGACTTCTGACTCCTTCCAGCAGGCA >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000354199_chr19_50211980_+_1044nt ATCTCTCTCGCCCCCTCTCCCTCCGTCCCGTCCTCGCCGCTCCCCTCACCCCGCCTCTCTCCCCCTCCCCCAGCCCCTCCTCTCCTCACC CCACCCGGCCTCCCTCCCTCCCTCGCCCGCCCGGCGCTCGCAGAGCCGACACCAGGGGGGCTCTCGATGTAGCACCATGACAGGCATCGC CGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATCGAGCACATCGAGGA CAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCCGGACCCCACACTAC CCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAAGATCTTGTCTGAAA ATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAGCTTCATCCAGATCG CCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCTGGAAGGCCGGACGG AGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGCTGATGACCATGGTTATGGTG TTTCTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCACAGGCTGGGGC AGCACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTCAGGGAAGGAGA ACTCCAGGCACAGGTGTGGATTTCTCTCCCGCCAGACTGGGGCCTCCAAGGCCTCAATGACATCCACCGACTTCTGACTCCTTCCAGCAG >In-frame_JAZF1_ENST00000283928_chr7_28220082_-_CPT1C_ENST00000405931_chr19_50211980_+_1370nt ATCTCTCTCGCCCCCTCTCCCTCCGTCCCGTCCTCGCCGCTCCCCTCACCCCGCCTCTCTCCCCCTCCCCCAGCCCCTCCTCTCCTCACC CCACCCGGCCTCCCTCCCTCCCTCGCCCGCCCGGCGCTCGCAGAGCCGACACCAGGGGGGCTCTCGATGTAGCACCATGACAGGCATCGC CGCCGCCTCCTTCTTCTCCAATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGACCTCATCGAGCACATCGAGGA CAACCACATCGTTCACTCTGGCTACAGAATGCTTTCAGCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCCGGACCCCACACTAC CCCAGCCCCAGCGGCTGCAATGGGACCTTCCAGACCAGATCCACTCCTCCATCTCTCTAGCCCTGAGGGGAGCCAAGATCTTGTCTGAAA ATGTCGACTGCCATGTCGTTCCATTCTCCCTATTTGGCAAGAGCTTCATCCGACGCTGCCACCTCTCTTCAGACAGCTTCATCCAGATCG CCTTGCAACTGGCCCACTTCCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGGCCATGACTCGCTTATTCCTGGAAGGCCGGACGG AGACGGTGCGGTCTTGCACGAGGGAGGCCTGCAACTTTGTCAGGGCCATGGAGGACAAAGAGAAGACGGACCCACAGTGCCTCGCCCTGT TCCGCGTGGCAGTGGACAAGCACCAGGCTCTGCTGAAGGCAGCCATGAGCGGGCAGGGAGTTGACCGCCACCTGTTTGCGCTGTACATCG TGTCCCGATTCCTCCACCTGCAGTCGCCCTTCCTGACCCAGGTCCATTCGGAGCAGTGGCAGCTGTCCACCAGCCAGATCCCTGTTCAGC AAATGCATCTGTTTGACGTCCACAATTACCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGCTGATGACCATGGTTATGGTGTTT CTTATATCTTCATGGGGGATGGCATGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAAAACGGATTCCCACAGGCTGGGGCAGC ACATTGAGGACGCACTGCTGGATGTGGCCTCCCTGTTCCAGGCGGGACAGCATTTTAAGCGCCGGTTCAGAGGGTCAGGGAAGGAGAACT CCAGGCACAGGTGTGGATTTCTCTCCCGCCAGACTGGGGCCTCCAAGGCCTCAATGACATCCACCGACTTCTGACTCCTTCCAGCAGGCA GCTGGCCTCTCCAAGGAATAAGGGTGAAATTGCCACAGCTGGCTGACACAGGACAGGGGCAACTGGTTTGGCAACCCCACATCCAGGCCA |
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FusionGenePPI for JAZF1_CPT1C |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
JAZF1 | NR2C2, PPARG, RXRA, YEATS4, TRRAP, MEAF6, RUVBL1, MYCL, HIST1H2BA, MORF4L2 | CPT1C |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for JAZF1_CPT1C |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for JAZF1_CPT1C |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | JAZF1 | C0011860 | Diabetes Mellitus, Non-Insulin-Dependent | 1 | CTD_human |
Hgene | JAZF1 | C0014170 | Endometrial Neoplasms | 1 | CTD_human |
Hgene | JAZF1 | C0024141 | Lupus Erythematosus, Systemic | 1 | CTD_human |
Hgene | JAZF1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Tgene | CPT1C | C0025202 | melanoma | 1 | CTD_human |
Tgene | CPT1C | C0031117 | Peripheral Neuropathy | 1 | CTD_human |
Tgene | CPT1C | C4225387 | SPASTIC PARAPLEGIA 73, AUTOSOMAL DOMINANT | 1 | ORPHANET;UNIPROT |