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Fusion gene ID: 17392 |
FusionGeneSummary for IL34_ST3GAL2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: IL34_ST3GAL2 | Fusion gene ID: 17392 | Hgene | Tgene | Gene symbol | IL34 | ST3GAL2 | Gene ID | 146433 | 6483 |
| Gene name | interleukin 34 | ST3 beta-galactoside alpha-2,3-sialyltransferase 2 | |
| Synonyms | C16orf77|IL-34 | Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 | |
| Cytomap | 16q22.1 | 16q22.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | interleukin-34 | CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferaseSIAT4-BST3Gal IIalpha 2,3-ST 2beta-galactoside alpha-2,3-sialyltransferase 2sialyltransferase 4B (beta-galactosidase alpha-2,3-sia | |
| Modification date | 20180520 | 20180523 | |
| UniProtAcc | Q6ZMJ4 | Q16842 | |
| Ensembl transtripts involved in fusion gene | ENST00000429149, ENST00000569641, ENST00000288098, ENST00000566361, | ENST00000342907, ENST00000393640, ENST00000566097, | |
| Fusion gene scores | * DoF score | 3 X 1 X 2=6 | 6 X 5 X 5=150 |
| # samples | 3 | 6 | |
| ** MAII score | log2(3/6*10)=2.32192809488736 | log2(6/150*10)=-1.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: IL34 [Title/Abstract] AND ST3GAL2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | IL34 | GO:0001934 | positive regulation of protein phosphorylation | 18467591 |
| Hgene | IL34 | GO:0008284 | positive regulation of cell proliferation | 18467591 |
| Hgene | IL34 | GO:0045651 | positive regulation of macrophage differentiation | 23409120 |
| Hgene | IL34 | GO:0045657 | positive regulation of monocyte differentiation | 23409120 |
| Tgene | ST3GAL2 | GO:0006486 | protein glycosylation | 9266697 |
| Tgene | ST3GAL2 | GO:0009101 | glycoprotein biosynthetic process | 9266697 |
| Tgene | ST3GAL2 | GO:0009247 | glycolipid biosynthetic process | 9266697 |
| Tgene | ST3GAL2 | GO:0009312 | oligosaccharide biosynthetic process | 9266697 |
| Tgene | ST3GAL2 | GO:0030259 | lipid glycosylation | 9266697 |
| Tgene | ST3GAL2 | GO:0097503 | sialylation | 9266697 |
| Tgene | ST3GAL2 | GO:1990743 | protein sialylation | 9266697 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-05-4402-01A | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-5UTR | ENST00000429149 | ENST00000342907 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| 5UTR-5UTR | ENST00000429149 | ENST00000393640 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| 5UTR-5UTR | ENST00000429149 | ENST00000566097 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000569641 | ENST00000342907 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000569641 | ENST00000393640 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000569641 | ENST00000566097 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000288098 | ENST00000342907 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000288098 | ENST00000393640 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000288098 | ENST00000566097 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000566361 | ENST00000342907 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000566361 | ENST00000393640 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
| intron-5UTR | ENST00000566361 | ENST00000566097 | IL34 | chr16 | 70613952 | + | ST3GAL2 | chr16 | 70433436 | - |
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FusionProtFeatures for IL34_ST3GAL2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| IL34 | ST3GAL2 |
| Cytokine that promotes the proliferation, survival anddifferentiation of monocytes and macrophages. Promotes the releaseof proinflammatory chemokines, and thereby plays an important rolein innate immunity and in inflammatory processes. Plays animportant role in the regulation of osteoclast proliferation anddifferentiation, and in the regulation of bone resorption.Signaling via CSF1R and its downstream effectors stimulatesphosphorylation of MAPK1/ERK2 AND MAPK3/ERK1.{ECO:0000269|PubMed:18467591, ECO:0000269|PubMed:20489731,ECO:0000269|PubMed:20504948, ECO:0000269|PubMed:20829061}. | Responsible for the synthesis of the sequence NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- found in terminal carbohydrategroups of certain glycoproteins, oligosaccharides and glycolipids.SIAT4A and SIAT4B sialylate the same acceptor substrates butexhibit different Km values. {ECO:0000250|UniProtKB:Q11204}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for IL34_ST3GAL2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for IL34_ST3GAL2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| IL34 | ATXN1 | ST3GAL2 | ENO2, FKBP14, IL13RA2, DPAGT1, ASPHD2, CANX, FOXA3, HSPA5, TMPRSS11B, TRIM25 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for IL34_ST3GAL2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for IL34_ST3GAL2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | IL34 | C0032460 | Polycystic Ovary Syndrome | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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