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Fusion gene ID: 17087 |
FusionGeneSummary for IFNGR1_SLC38A2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: IFNGR1_SLC38A2 | Fusion gene ID: 17087 | Hgene | Tgene | Gene symbol | IFNGR1 | SLC38A2 | Gene ID | 3459 | 54407 |
Gene name | interferon gamma receptor 1 | solute carrier family 38 member 2 | |
Synonyms | CD119|IFNGR|IMD27A|IMD27B | ATA2|PRO1068|SAT2|SNAT2 | |
Cytomap | 6q23.3 | 12q13.11 | |
Type of gene | protein-coding | protein-coding | |
Description | interferon gamma receptor 1AVP, type 2CD119 antigenCDw119IFN-gamma receptor 1IFN-gamma-R-alphaIFN-gamma-R1antiviral protein, type 2immune interferon receptor 1interferon-gamma receptor alpha chain | sodium-coupled neutral amino acid transporter 2amino acid transporter 2amino acid transporter A2protein 40-9-1system A amino acid transporter 2system A transporter 1system N amino acid transporter 2 | |
Modification date | 20180524 | 20180523 | |
UniProtAcc | P15260 | Q96QD8 | |
Ensembl transtripts involved in fusion gene | ENST00000367739, ENST00000543628, ENST00000367735, ENST00000478333, | ENST00000256689, ENST00000551374, ENST00000547252, | |
Fusion gene scores | * DoF score | 4 X 3 X 3=36 | 3 X 3 X 1=9 |
# samples | 5 | 4 | |
** MAII score | log2(5/36*10)=0.473931188332412 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/9*10)=2.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: IFNGR1 [Title/Abstract] AND SLC38A2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AI133230 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - | ||
ChiTaRS3.1 | AF116669 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000367739 | ENST00000256689 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-intron | ENST00000367739 | ENST00000551374 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-intron | ENST00000367739 | ENST00000547252 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-3UTR | ENST00000543628 | ENST00000256689 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-intron | ENST00000543628 | ENST00000551374 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-intron | ENST00000543628 | ENST00000547252 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-3UTR | ENST00000367735 | ENST00000256689 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-intron | ENST00000367735 | ENST00000551374 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-intron | ENST00000367735 | ENST00000547252 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-3UTR | ENST00000478333 | ENST00000256689 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-intron | ENST00000478333 | ENST00000551374 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
intron-intron | ENST00000478333 | ENST00000547252 | IFNGR1 | chr6 | 137519182 | + | SLC38A2 | chr12 | 46752830 | - |
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FusionProtFeatures for IFNGR1_SLC38A2 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
IFNGR1 | SLC38A2 |
Associates with IFNGR2 to form a receptor for thecytokine interferon gamma (IFNG) (PubMed:7615558, PubMed:2971451,PubMed:7617032, PubMed:10986460). Ligand binding stimulatesactivation of the JAK/STAT signaling pathway (PubMed:7673114).Plays an essential role in the IFN-gamma pathway that is requiredfor the cellular response to infectious agents (PubMed:20015550).{ECO:0000269|PubMed:10986460, ECO:0000269|PubMed:20015550,ECO:0000269|PubMed:2971451, ECO:0000269|PubMed:7615558,ECO:0000269|PubMed:7617032, ECO:0000269|PubMed:7673114}. | Functions as a sodium-dependent amino acid transporter.Mediates the saturable, pH-sensitive and electrogenic cotransportof neutral amino acids and sodium ions with a stoichiometry of1:1. May function in the transport of amino acids at the blood-brain barrier and in the supply of maternal nutrients to the fetusthrough the placenta. {ECO:0000269|PubMed:10930503,ECO:0000269|PubMed:15922329}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for IFNGR1_SLC38A2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for IFNGR1_SLC38A2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for IFNGR1_SLC38A2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for IFNGR1_SLC38A2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | IFNGR1 | C4011949 | IMMUNODEFICIENCY 27A | 2 | ORPHANET;UNIPROT |
Hgene | IFNGR1 | C0014175 | Endometriosis | 1 | CTD_human |
Hgene | IFNGR1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Hgene | IFNGR1 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Tgene | SLC38A2 | C0036341 | Schizophrenia | 1 | PSYGENET |