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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 16684

FusionGeneSummary for HOOK3_TGS1

check button Fusion gene summary
Fusion gene informationFusion gene name: HOOK3_TGS1
Fusion gene ID: 16684
HgeneTgene
Gene symbol

HOOK3

TGS1

Gene ID

84376

286826

Gene namehook microtubule tethering protein 3lin-9 DREAM MuvB core complex component
SynonymsHK3BARA|BARPsv|Lin-9|TGS|TGS1|TGS2
Cytomap

8p11.21

1q42.12

Type of geneprotein-codingprotein-coding
Descriptionprotein Hook homolog 3h-hook3hHK3hook homolog 3protein lin-9 homologTUDOR gene similar proteinbeta subunit-associated regulator of apoptosislin-9 homologpRB-associated proteinrb related pathway actortype I interferon receptor beta chain-associated protein
Modification date2018052320180523
UniProtAcc

Q86VS8

Q96RS0

Ensembl transtripts involved in fusion geneENST00000307602, ENST00000524839, 
ENST00000260129, 
Fusion gene scores* DoF score11 X 10 X 6=6603 X 4 X 3=36
# samples 153
** MAII scorelog2(15/660*10)=-2.13750352374993
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(3/36*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: HOOK3 [Title/Abstract] AND TGS1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVCOADTCGA-CA-6715-01AHOOK3chr8

42761401

+TGS1chr8

56695307

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000307602ENST00000260129HOOK3chr8

42761401

+TGS1chr8

56695307

+
intron-3CDSENST00000524839ENST00000260129HOOK3chr8

42761401

+TGS1chr8

56695307

+

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FusionProtFeatures for HOOK3_TGS1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
HOOK3

Q86VS8

TGS1

Q96RS0

Probably serves as a target for the spiC protein fromSalmonella typhimurium, which inactivates it, leading to a strongalteration in cellular trafficking (By similarity). Component ofthe FTS/Hook/FHIP complex (FHF complex). The FHF complex mayfunction to promote vesicle trafficking and/or fusion via thehomotypic vesicular protein sorting complex (the HOPS complex).May regulate clearance of endocytosed receptors such as MSR1.Participates in defining the architecture and localization of theGolgi complex. Acts as an adapter protein linking the dynein motorcomplex to various cargos and converts dynein from a non-processive to a highly processive motor in the presence ofdynactin. Facilitates the interaction between dynein and dynactinand activates dynein processivity (the ability to move along amicrotubule for a long distance without falling off the track)(PubMed:25035494). {ECO:0000250|UniProtKB:Q8BUK6,ECO:0000269|PubMed:11238449, ECO:0000269|PubMed:17237231,ECO:0000269|PubMed:18799622, ECO:0000269|PubMed:25035494}. Catalyzes the 2 serial methylation steps for theconversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs andsnoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure.The enzyme is specific for guanine, and N7 methylation mustprecede N2 methylation. Hypermethylation of the m7G cap of UsnRNAs leads to their concentration in nuclear foci, theircolocalization with coilin and the formation of canonical Cajalbodies (CBs). Plays a role in transcriptional regulation.{ECO:0000269|PubMed:11517327, ECO:0000269|PubMed:11912212,ECO:0000269|PubMed:16687569, ECO:0000269|PubMed:18775984}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneTGS1chr8:42761401chr8:56695307ENST00000260129+013611_62433854Compositional biasNote=Lys-rich
TgeneTGS1chr8:42761401chr8:56695307ENST00000260129+013631_84633854RegionNote=Sufficient for catalytic activity

- In-frame and not-retained protein feature among the 13 regional features.
>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneHOOK3chr8:42761401chr8:56695307ENST00000307602+222167_43347719Coiled coilOntology_term=ECO:0000255
HgeneHOOK3chr8:42761401chr8:56695307ENST00000307602+222462_66747719Coiled coilOntology_term=ECO:0000255
HgeneHOOK3chr8:42761401chr8:56695307ENST00000307602+22210_12647719DomainCalponin-homology (CH)
HgeneHOOK3chr8:42761401chr8:56695307ENST00000307602+222553_71847719RegionNote=Required for association with Golgi


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FusionGeneSequence for HOOK3_TGS1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_HOOK3_ENST00000307602_chr8_42761401_+_TGS1_ENST00000260129_chr8_56695307_+_868aa
MFSVESLERAELCESLLTWIQTFNVDAPCQTVEDLTNGVVMAQVLQKMDRKLYNLGLKGYYIRDSGNNSGDQATEEEEGGYSCGTAESHD
SKGIGLDESELDSEAELMRSMGLPLQFGRITAHKDFEVSMNTRNKVKIKKKKHQKKYLDEIVQESWRKEYEEDDILASDDPSSIEQYENT
RTYELQSKKDTETENPPVENTLSPKLEITEKWEKYWNEYGGGLLWQSWQEKHPGQALSSEPWNFPDTKEEWEQHYSQLYWYYLEQFQYWE
AQGWTFDASQSCDTDTYTSKTEADDKNDEKCMKVDLVSFPSSPIMVDNDSSGTSDKDHSEILDGISNIKLNSEEVTQSQLDSCTSHDGHQ
QLSEVSSKRECPASGQSEPRNGGTNEESNSSGNTNTDPPAEDSQKSSGANTSKDRPHASGTDGDESEEDPPEHKPSKLKRSHELDIDENP
ASDFDDSGSLLGFKYGSGQKYGGIPNFSHRQVRYLEKNVKLKSKYLDMRRQIKMKNKHIFFTKESEKPFFKKSKILSKVEKFLTWVNKPM
DEEASQESSSHDNVHDASTSSDSEEQDMSVKKGDDLLETNNPEPEKCQSVSSAGELETENYERDSLLATVPDEQDCVTQEVPDSRQAETE
AEVKKKKNKKKNKKVNGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTI
QFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKK


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_HOOK3_ENST00000307602_chr8_42761401_+_TGS1_ENST00000260129_chr8_56695307_+_2604nt
ATGTTCAGCGTAGAGTCGCTGGAGCGGGCGGAGCTGTGCGAGAGCCTCCTCACTTGGATCCAGACATTTAATGTGGATGCACCATGCCAG
ACCGTGGAAGATTTAACGAATGGGGTTGTGATGGCCCAGGTTCTTCAAAAGATGGATCGAAAATTGTACAATTTGGGATTAAAAGGCTAT
TACATCAGAGACAGTGGCAACAATTCAGGAGACCAGGCGACAGAAGAAGAGGAAGGTGGTTATTCCTGTGGTACTGCAGAATCACATGAC
AGCAAAGGCATAGGCCTGGATGAAAGTGAACTTGATTCTGAGGCTGAACTCATGAGAAGTATGGGATTGCCACTTCAATTTGGTAGGATA
ACTGCACATAAGGATTTTGAGGTATCTATGAATACTAGAAATAAAGTTAAAATAAAAAAGAAAAAACATCAAAAGAAATACTTAGATGAA
ATTGTGCAAGAATCTTGGAGAAAAGAATATGAAGAAGACGACATTTTGGCTTCAGATGATCCATCTTCAATTGAACAGTATGAGAACACC
AGAACATATGAACTTCAAAGCAAAAAAGATACTGAGACAGAAAATCCTCCAGTTGAAAACACATTATCTCCAAAGCTAGAAATTACAGAG
AAATGGGAAAAGTATTGGAATGAATATGGAGGAGGACTATTGTGGCAAAGTTGGCAAGAAAAACATCCGGGTCAAGCACTATCTTCTGAA
CCTTGGAACTTTCCTGATACAAAGGAAGAATGGGAGCAACATTATAGTCAACTTTATTGGTATTATTTGGAACAATTTCAGTATTGGGAA
GCTCAGGGTTGGACTTTTGATGCCTCGCAAAGCTGTGATACAGATACTTACACATCTAAAACAGAAGCTGATGACAAGAACGATGAAAAA
TGCATGAAAGTTGACTTAGTATCTTTTCCATCTTCACCTATTATGGTTGATAATGATAGCTCTGGTACAAGTGATAAGGATCATAGTGAA
ATACTTGATGGAATTAGTAACATAAAACTGAATTCAGAGGAAGTAACACAGAGCCAATTAGATTCCTGTACAAGTCATGATGGTCATCAA
CAGCTAAGTGAAGTTAGTAGCAAAAGAGAGTGCCCTGCTTCCGGCCAAAGTGAACCACGTAATGGAGGAACCAATGAGGAAAGCAACTCA
TCGGGGAATACAAACACAGACCCACCAGCTGAGGATTCACAGAAGTCTTCAGGAGCAAACACAAGCAAAGACAGACCACATGCCAGTGGT
ACTGATGGAGATGAAAGTGAGGAAGACCCACCTGAGCATAAGCCAAGCAAACTGAAGAGGAGCCATGAACTGGACATTGATGAAAACCCA
GCTTCAGACTTTGATGACAGTGGTTCCCTTCTAGGATTCAAGTATGGCTCAGGACAAAAATATGGTGGAATCCCAAATTTCAGTCATCGG
CAGGTCAGGTATTTAGAGAAGAATGTGAAGCTTAAGTCTAAGTACCTAGACATGCGCAGACAAATAAAGATGAAAAACAAACACATCTTC
TTTACCAAAGAGTCAGAAAAACCATTTTTCAAGAAAAGCAAAATTCTGAGTAAGGTAGAAAAATTCCTCACATGGGTTAATAAACCAATG
GATGAAGAAGCATCACAGGAATCATCTTCTCATGACAATGTGCACGACGCTTCCACAAGTAGTGATTCAGAGGAACAAGACATGTCTGTT
AAAAAAGGTGATGACCTACTGGAGACTAATAATCCAGAACCTGAAAAGTGTCAGAGCGTATCTTCAGCTGGTGAACTTGAAACAGAAAAC
TATGAAAGAGACAGCTTGCTAGCAACTGTTCCAGATGAGCAGGATTGTGTTACTCAAGAAGTGCCAGACTCCCGCCAGGCAGAAACTGAA
GCTGAAGTGAAAAAGAAGAAGAACAAGAAGAAGAACAAAAAGGTGAATGGTCTGCCTCCTGAAATAGCTGCTGTTCCTGAGCTGGCAAAA
TACTGGGCCCAGAGGTACAGGCTCTTCTCCCGTTTTGATGATGGGATTAAGTTGGACAGAGAGGGCTGGTTTTCAGTTACACCCGAGAAG
ATTGCTGAACACATTGCTGGCCGTGTTAGTCAGTCCTTCAAGTGTGACGTTGTAGTAGACGCATTCTGTGGAGTTGGAGGAAATACCATT
CAGTTTGCCTTAACAGGAATGAGAGTGATTGCCATTGATATCGATCCTGTTAAGATTGCCCTTGCTCGCAATAATGCAGAAGTTTATGGG
ATAGCAGATAAGATAGAGTTCATCTGTGGAGATTTCTTGCTGCTGGCTTCTTTTTTAAAGGCTGATGTTGTGTTCCTCAGCCCACCTTGG
GGAGGGCCAGACTATGCCACTGCAGAGACCTTTGACATTAGAACAATGATGTCTCCTGATGGCTTTGAAATTTTCAGACTTTCTAAGAAG
ATCACTAATAATATTGTTTATTTTCTTCCAAGAAATGCTGATATTGACCAGGTGGCATCCTTAGCTGGGCCTGGAGGGCAAGTGGAAATA


* Fusion transcript sequences (Full-length transcript).
>In-frame_HOOK3_ENST00000307602_chr8_42761401_+_TGS1_ENST00000260129_chr8_56695307_+_3547nt
CGGTCCCGAGTGAAAGGAGAAGGAGGGGCGCTGGGGGTGACGGTGCGGAGCCGCTGCCAGCGCTGGGCGAGAGTCGGCGGCCGGATCCGA
GGAGCAGGCGGGCCTGAGGCCGAGTCAGCTGCGCGGGCCCCCGGATCCCCCGACAGAGCGGCGGCGGTGTCTGGCCAGGCGGTAGGCGCT
GCCTGGCCGCGGCGGGGAAGATGTTCAGCGTAGAGTCGCTGGAGCGGGCGGAGCTGTGCGAGAGCCTCCTCACTTGGATCCAGACATTTA
ATGTGGATGCACCATGCCAGACCGTGGAAGATTTAACGAATGGGGTTGTGATGGCCCAGGTTCTTCAAAAGATGGATCGAAAATTGTACA
ATTTGGGATTAAAAGGCTATTACATCAGAGACAGTGGCAACAATTCAGGAGACCAGGCGACAGAAGAAGAGGAAGGTGGTTATTCCTGTG
GTACTGCAGAATCACATGACAGCAAAGGCATAGGCCTGGATGAAAGTGAACTTGATTCTGAGGCTGAACTCATGAGAAGTATGGGATTGC
CACTTCAATTTGGTAGGATAACTGCACATAAGGATTTTGAGGTATCTATGAATACTAGAAATAAAGTTAAAATAAAAAAGAAAAAACATC
AAAAGAAATACTTAGATGAAATTGTGCAAGAATCTTGGAGAAAAGAATATGAAGAAGACGACATTTTGGCTTCAGATGATCCATCTTCAA
TTGAACAGTATGAGAACACCAGAACATATGAACTTCAAAGCAAAAAAGATACTGAGACAGAAAATCCTCCAGTTGAAAACACATTATCTC
CAAAGCTAGAAATTACAGAGAAATGGGAAAAGTATTGGAATGAATATGGAGGAGGACTATTGTGGCAAAGTTGGCAAGAAAAACATCCGG
GTCAAGCACTATCTTCTGAACCTTGGAACTTTCCTGATACAAAGGAAGAATGGGAGCAACATTATAGTCAACTTTATTGGTATTATTTGG
AACAATTTCAGTATTGGGAAGCTCAGGGTTGGACTTTTGATGCCTCGCAAAGCTGTGATACAGATACTTACACATCTAAAACAGAAGCTG
ATGACAAGAACGATGAAAAATGCATGAAAGTTGACTTAGTATCTTTTCCATCTTCACCTATTATGGTTGATAATGATAGCTCTGGTACAA
GTGATAAGGATCATAGTGAAATACTTGATGGAATTAGTAACATAAAACTGAATTCAGAGGAAGTAACACAGAGCCAATTAGATTCCTGTA
CAAGTCATGATGGTCATCAACAGCTAAGTGAAGTTAGTAGCAAAAGAGAGTGCCCTGCTTCCGGCCAAAGTGAACCACGTAATGGAGGAA
CCAATGAGGAAAGCAACTCATCGGGGAATACAAACACAGACCCACCAGCTGAGGATTCACAGAAGTCTTCAGGAGCAAACACAAGCAAAG
ACAGACCACATGCCAGTGGTACTGATGGAGATGAAAGTGAGGAAGACCCACCTGAGCATAAGCCAAGCAAACTGAAGAGGAGCCATGAAC
TGGACATTGATGAAAACCCAGCTTCAGACTTTGATGACAGTGGTTCCCTTCTAGGATTCAAGTATGGCTCAGGACAAAAATATGGTGGAA
TCCCAAATTTCAGTCATCGGCAGGTCAGGTATTTAGAGAAGAATGTGAAGCTTAAGTCTAAGTACCTAGACATGCGCAGACAAATAAAGA
TGAAAAACAAACACATCTTCTTTACCAAAGAGTCAGAAAAACCATTTTTCAAGAAAAGCAAAATTCTGAGTAAGGTAGAAAAATTCCTCA
CATGGGTTAATAAACCAATGGATGAAGAAGCATCACAGGAATCATCTTCTCATGACAATGTGCACGACGCTTCCACAAGTAGTGATTCAG
AGGAACAAGACATGTCTGTTAAAAAAGGTGATGACCTACTGGAGACTAATAATCCAGAACCTGAAAAGTGTCAGAGCGTATCTTCAGCTG
GTGAACTTGAAACAGAAAACTATGAAAGAGACAGCTTGCTAGCAACTGTTCCAGATGAGCAGGATTGTGTTACTCAAGAAGTGCCAGACT
CCCGCCAGGCAGAAACTGAAGCTGAAGTGAAAAAGAAGAAGAACAAGAAGAAGAACAAAAAGGTGAATGGTCTGCCTCCTGAAATAGCTG
CTGTTCCTGAGCTGGCAAAATACTGGGCCCAGAGGTACAGGCTCTTCTCCCGTTTTGATGATGGGATTAAGTTGGACAGAGAGGGCTGGT
TTTCAGTTACACCCGAGAAGATTGCTGAACACATTGCTGGCCGTGTTAGTCAGTCCTTCAAGTGTGACGTTGTAGTAGACGCATTCTGTG
GAGTTGGAGGAAATACCATTCAGTTTGCCTTAACAGGAATGAGAGTGATTGCCATTGATATCGATCCTGTTAAGATTGCCCTTGCTCGCA
ATAATGCAGAAGTTTATGGGATAGCAGATAAGATAGAGTTCATCTGTGGAGATTTCTTGCTGCTGGCTTCTTTTTTAAAGGCTGATGTTG
TGTTCCTCAGCCCACCTTGGGGAGGGCCAGACTATGCCACTGCAGAGACCTTTGACATTAGAACAATGATGTCTCCTGATGGCTTTGAAA
TTTTCAGACTTTCTAAGAAGATCACTAATAATATTGTTTATTTTCTTCCAAGAAATGCTGATATTGACCAGGTGGCATCCTTAGCTGGGC
CTGGAGGGCAAGTGGAAATAGAACAGAACTTCCTTAACAACAAATTGAAGACAATCACTGCATATTTTGGTGACCTAATTCGAAGACCAG
CCTCTGAAACCTAACTATGCAGCAGTGCGAGGACAAAAGATCATGGAGTGGTCAAAATATTCAGATGAGACATTTGGCATGTCTTCCTTT
ATTCACTGATATTTTCTACCCATGGTCTTATATCACCGTATGAAATGGAAACTTACAGGACTTAAATATCAGTGAAATATTTTGAGATCT
TTGAATAATTCCTTTAGAGGAATTATACAAAATTAATATATATGAGTCCTTTGTAATTTATTTTTTTTTGAGACAGGATCTCACTTTTAC
CGCCCAGGCTGGAGTGCAGTGCCATGATCACAGCTCACTGCAGGTTCAGCCTTCTGAGTTCAAGCAATCCTTCTGTCTCAGTCTCCTCAG
TAGCTGGGGCTTTAGGTGGGCACTGCCACACCGTACTAATTTTTGTATTTTTTGTAGAGACGAGGTCCCACCATGTTGCCCAGGCTGGTG
TCAAACTCCTGGGCTCAGTCAGTCCCCCCATCTCACCCTCCCCAAGTGCTGGAATTACAGGCGTGAGCTACTGTGCCCAGCCTTACGGAC
ATCCTTTTGAATTATCTTTTTCACTCATAGAATATGAATACATTTATTTAGACTTTTTCTAGAACTTTCCTGTTTTCATGTCTTTGCTTC
ATCTGGAATTGGCTTAACACCCTTTTATAAAGTTTGTGTTTGTAAAATTTCCATTGTGACATCAATACGCAATATATTTTGTAATATAGG


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FusionGenePPI for HOOK3_TGS1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
HOOK3CUL3, AKTIP, HOOK1, HOOK2, HOOK3, FAM160A2, VPS16, VPS41, SCFD1, CCDC8, ZC4H2, COMTD1, TNFSF13B, IFT57, FNTB, MRE11A, NTRK1, SSX2IP, CEP63, DUSP3, FAM160A1, MTMR4, SYCE3, RALBP1, CDC16, NCAPH2, KLHL10, KLHL20TGS1EED, CREBBP, EP300, NCOA6, MED1, HNF4A, COIL, LIN28A, SNRPA1, FBL, FAM177A1, XPO1, SEPT7, CRY1, ERCC5, MYBPH, SEPT2, SORBS1, MAGED2, AFG3L2, DNAJB4, ZZEF1, SCRIB, RSRC1, ZMYM1, LSM10, SNCA, SSX2IP, LSM11, SEPT10, SNRPN, SNRPF, SNRPE, SNRPG, SNRNP70, TGS1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for HOOK3_TGS1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for HOOK3_TGS1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneHOOK3C0032460Polycystic Ovary Syndrome1CTD_human