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Fusion gene ID: 16586 |
FusionGeneSummary for HNRNPH1_TRAP1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: HNRNPH1_TRAP1 | Fusion gene ID: 16586 | Hgene | Tgene | Gene symbol | HNRNPH1 | TRAP1 | Gene ID | 3187 | 10131 |
Gene name | heterogeneous nuclear ribonucleoprotein H1 | TNF receptor associated protein 1 | |
Synonyms | HNRPH|HNRPH1|hnRNPH | HSP 75|HSP75|HSP90L|TRAP-1 | |
Cytomap | 5q35.3 | 16p13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | heterogeneous nuclear ribonucleoprotein Hheterogeneous nuclear ribonucleoprotein H1 (H) | heat shock protein 75 kDa, mitochondrialTNFR-associated protein 1testicular tissue protein Li 209tumor necrosis factor type 1 receptor-associated protein | |
Modification date | 20180524 | 20180519 | |
UniProtAcc | P31943 | Q12931 | |
Ensembl transtripts involved in fusion gene | ENST00000393432, ENST00000442819, ENST00000356731, ENST00000329433, ENST00000510411, ENST00000511300, ENST00000524180, | ENST00000246957, ENST00000575671, ENST00000538171, ENST00000573872, | |
Fusion gene scores | * DoF score | 11 X 13 X 4=572 | 2 X 2 X 1=4 |
# samples | 12 | 2 | |
** MAII score | log2(12/572*10)=-2.25298074116987 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: HNRNPH1 [Title/Abstract] AND TRAP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | HNRNPH1 | GO:0043484 | regulation of RNA splicing | 16946708 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DA379519 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000393432 | ENST00000246957 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000393432 | ENST00000575671 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000393432 | ENST00000538171 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000393432 | ENST00000573872 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000442819 | ENST00000246957 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000442819 | ENST00000575671 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000442819 | ENST00000538171 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000442819 | ENST00000573872 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000356731 | ENST00000246957 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000356731 | ENST00000575671 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000356731 | ENST00000538171 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000356731 | ENST00000573872 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000329433 | ENST00000246957 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000329433 | ENST00000575671 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000329433 | ENST00000538171 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000329433 | ENST00000573872 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000510411 | ENST00000246957 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000510411 | ENST00000575671 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000510411 | ENST00000538171 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000510411 | ENST00000573872 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000511300 | ENST00000246957 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000511300 | ENST00000575671 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000511300 | ENST00000538171 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000511300 | ENST00000573872 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000524180 | ENST00000246957 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000524180 | ENST00000575671 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000524180 | ENST00000538171 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
intron-intron | ENST00000524180 | ENST00000573872 | HNRNPH1 | chr5 | 179050046 | - | TRAP1 | chr16 | 3728552 | - |
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FusionProtFeatures for HNRNPH1_TRAP1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
HNRNPH1 | TRAP1 |
This protein is a component of the heterogeneous nuclearribonucleoprotein (hnRNP) complexes which provide the substratefor the processing events that pre-mRNAs undergo before becomingfunctional, translatable mRNAs in the cytoplasm. Mediates pre-mRNAalternative splicing regulation. Inhibits, together with CUGBP1,insulin receptor (IR) pre-mRNA exon 11 inclusion in myoblast.Binds to the IR RNA. Binds poly(RG). {ECO:0000269|PubMed:11003644,ECO:0000269|PubMed:16946708}. | Chaperone that expresses an ATPase activity. Involved inmaintaining mitochondrial function and polarization, downstream ofPINK1 and mitochondrial complex I. Is a negative regulator ofmitochondrial respiration able to modulate the balance betweenoxidative phosphorylation and aerobic glycolysis. The impact ofTRAP1 on mitochondrial respiration is probably mediated bymodulation of mitochondrial SRC and inhibition of SDHA.{ECO:0000269|PubMed:23525905, ECO:0000269|PubMed:23564345,ECO:0000269|PubMed:23747254}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for HNRNPH1_TRAP1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for HNRNPH1_TRAP1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for HNRNPH1_TRAP1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HNRNPH1_TRAP1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | HNRNPH1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Tgene | TRAP1 | C0029408 | Degenerative polyarthritis | 1 | CTD_human |
Tgene | TRAP1 | C0038356 | Stomach Neoplasms | 1 | CTD_human |