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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 16505

FusionGeneSummary for HN1_HN1

check button Fusion gene summary
Fusion gene informationFusion gene name: HN1_HN1
Fusion gene ID: 16505
HgeneTgene
Gene symbol

HN1

HN1

Gene ID

Gene name
Synonyms
Cytomap

Type of gene
Description
Modification date
UniProtAcc

Ensembl transtripts involved in fusion geneENST00000476258, ENST00000405458, 
ENST00000409753, ENST00000482348, 
ENST00000356033, ENST00000470924, 
ENST00000481647, ENST00000392566, 
ENST00000581874, ENST00000465454, 
ENST00000476258, ENST00000405458, 
ENST00000409753, ENST00000482348, 
ENST00000356033, ENST00000470924, 
ENST00000481647, ENST00000392566, 
ENST00000581874, ENST00000465454, 
Fusion gene scores* DoF score7 X 5 X 5=1757 X 4 X 6=168
# samples 77
** MAII scorelog2(7/175*10)=-1.32192809488736
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/168*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: HN1 [Title/Abstract] AND HN1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1CB240950HN1chr17

73131441

+HN1chr17

73131500

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3UTRENST00000476258ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000476258ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000476258ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000476258ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000476258ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000476258ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000476258ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000476258ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000476258ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000476258ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000405458ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000405458ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000405458ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000405458ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000405458ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000405458ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000405458ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000405458ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000405458ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000405458ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000409753ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000409753ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000409753ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000409753ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000409753ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000409753ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000409753ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000409753ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000409753ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000409753ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000482348ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000482348ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000482348ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000482348ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000482348ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000482348ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000482348ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000482348ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000482348ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000482348ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000356033ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000356033ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000356033ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000356033ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000356033ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000356033ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000356033ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000356033ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000356033ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000356033ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000470924ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000470924ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000470924ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000470924ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000470924ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000470924ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000470924ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000470924ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000470924ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000470924ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000481647ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000481647ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000481647ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000481647ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000481647ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000481647ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000481647ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000481647ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000481647ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000481647ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000392566ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000392566ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000392566ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000392566ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000392566ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000392566ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000392566ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000392566ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000392566ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000392566ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000581874ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000581874ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000581874ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000581874ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000581874ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000581874ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000581874ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000581874ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000581874ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000581874ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000465454ENST00000476258HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000465454ENST00000405458HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000465454ENST00000409753HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000465454ENST00000482348HN1chr17

73131441

+HN1chr17

73131500

-
intron-3UTRENST00000465454ENST00000356033HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000465454ENST00000470924HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000465454ENST00000481647HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000465454ENST00000392566HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000465454ENST00000581874HN1chr17

73131441

+HN1chr17

73131500

-
intron-intronENST00000465454ENST00000465454HN1chr17

73131441

+HN1chr17

73131500

-

Top

FusionProtFeatures for HN1_HN1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
HN1

HN1

Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for HN1_HN1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for HN1_HN1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for HN1_HN1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for HN1_HN1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource