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Fusion gene ID: 15663 |
FusionGeneSummary for GTF3C4_PSMC2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: GTF3C4_PSMC2 | Fusion gene ID: 15663 | Hgene | Tgene | Gene symbol | GTF3C4 | PSMC2 | Gene ID | 9329 | 5701 |
Gene name | general transcription factor IIIC subunit 4 | proteasome 26S subunit, ATPase 2 | |
Synonyms | KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA | MSS1|Nbla10058|S7 | |
Cytomap | 9q34.13 | 7q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | general transcription factor 3C polypeptide 4TFIIIC 90 kDa subunitgeneral transcription factor 3C 4general transcription factor IIIC, polypeptide 4, 90kDatranscription factor IIIC 90 kDa subunittranscription factor IIIC subunit delta | 26S proteasome regulatory subunit 726S protease regulatory subunit 726S proteasome AAA-ATPase subunit RPT1mammalian suppressor of sgv-1 of yeastprotease 26S subunit 7proteasome (prosome, macropain) 26S subunit, ATPase, 2putative protein product of N | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9UKN8 | P35998 | |
Ensembl transtripts involved in fusion gene | ENST00000483873, ENST00000372146, | ENST00000435765, ENST00000292644, ENST00000544811, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 5 X 5 X 2=50 |
# samples | 2 | 5 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(5/50*10)=0 | |
Context | PubMed: GTF3C4 [Title/Abstract] AND PSMC2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PSMC2 | GO:0006511 | ubiquitin-dependent protein catabolic process | 9295362 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AU118024 | GTF3C4 | chr9 | 135559600 | + | PSMC2 | chr7 | 102988089 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-5UTR | ENST00000483873 | ENST00000435765 | GTF3C4 | chr9 | 135559600 | + | PSMC2 | chr7 | 102988089 | + |
intron-5UTR | ENST00000483873 | ENST00000292644 | GTF3C4 | chr9 | 135559600 | + | PSMC2 | chr7 | 102988089 | + |
intron-intron | ENST00000483873 | ENST00000544811 | GTF3C4 | chr9 | 135559600 | + | PSMC2 | chr7 | 102988089 | + |
intron-5UTR | ENST00000372146 | ENST00000435765 | GTF3C4 | chr9 | 135559600 | + | PSMC2 | chr7 | 102988089 | + |
intron-5UTR | ENST00000372146 | ENST00000292644 | GTF3C4 | chr9 | 135559600 | + | PSMC2 | chr7 | 102988089 | + |
intron-intron | ENST00000372146 | ENST00000544811 | GTF3C4 | chr9 | 135559600 | + | PSMC2 | chr7 | 102988089 | + |
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FusionProtFeatures for GTF3C4_PSMC2 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
GTF3C4 | PSMC2 |
Essential for RNA polymerase III to make a number ofsmall nuclear and cytoplasmic RNAs, including 5S RNA, tRNA, andadenovirus-associated (VA) RNA of both cellular and viral origin.Has histone acetyltransferase activity (HAT) with uniquespecificity for free and nucleosomal H3. May cooperate with GTF3C5in facilitating the recruitment of TFIIIB and RNA polymerasethrough direct interactions with BRF1, POLR3C and POLR3F. May belocalized close to the A box. | Component of the 26S proteasome, a multiprotein complexinvolved in the ATP-dependent degradation of ubiquitinatedproteins. This complex plays a key role in the maintenance ofprotein homeostasis by removing misfolded or damaged proteins,which could impair cellular functions, and by removing proteinswhose functions are no longer required. Therefore, the proteasomeparticipates in numerous cellular processes, including cell cycleprogression, apoptosis, or DNA damage repair. PSMC2 belongs to theheterohexameric ring of AAA (ATPases associated with diversecellular activities) proteins that unfolds ubiquitinated targetproteins that are concurrently translocated into a proteolyticchamber and degraded into peptides. {ECO:0000269|PubMed:1317798,ECO:0000269|PubMed:9295362}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GTF3C4_PSMC2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GTF3C4_PSMC2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GTF3C4_PSMC2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GTF3C4_PSMC2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |