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Fusion gene ID: 15445 |
FusionGeneSummary for GRINA_MUC6 |
Fusion gene summary |
Fusion gene information | Fusion gene name: GRINA_MUC6 | Fusion gene ID: 15445 | Hgene | Tgene | Gene symbol | GRINA | MUC6 | Gene ID | 2907 | 4588 |
Gene name | glutamate ionotropic receptor NMDA type subunit associated protein 1 | mucin 6, oligomeric mucus/gel-forming | |
Synonyms | HNRGW|LFG1|NMDARA1|TMBIM3 | MUC-6 | |
Cytomap | 8q24.3 | 11p15.5 | |
Type of gene | protein-coding | protein-coding | |
Description | protein lifeguard 1NMDA receptor glutamate-binding subunitglutamate [NMDA] receptor-associated protein 1glutamate receptor, NMDA subtype, glutamate-binding subunitglutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate bin | mucin-6gastric mucin-6 | |
Modification date | 20180329 | 20180329 | |
UniProtAcc | Q7Z429 | Q6W4X9 | |
Ensembl transtripts involved in fusion gene | ENST00000313269, ENST00000395068, | ENST00000421673, | |
Fusion gene scores | * DoF score | 6 X 6 X 2=72 | 2 X 2 X 2=8 |
# samples | 6 | 2 | |
** MAII score | log2(6/72*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: GRINA [Title/Abstract] AND MUC6 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | PRAD | TCGA-CH-5766-01A | GRINA | chr8 | 145067583 | + | MUC6 | chr11 | 1018770 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000313269 | ENST00000421673 | GRINA | chr8 | 145067583 | + | MUC6 | chr11 | 1018770 | - |
In-frame | ENST00000395068 | ENST00000421673 | GRINA | chr8 | 145067583 | + | MUC6 | chr11 | 1018770 | - |
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FusionProtFeatures for GRINA_MUC6 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
GRINA | MUC6 |
Potential apoptotic regulator. | May provide a mechanism for modulation of thecomposition of the protective mucus layer related to acidsecretion or the presence of bacteria and noxious agents in thelumen. Plays an important role in the cytoprotection of epithelialsurfaces and are used as tumor markers in a variety of cancers.May play a role in epithelial organogenesis.{ECO:0000269|PubMed:10209489, ECO:0000269|PubMed:10330458,ECO:0000269|PubMed:11988092}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000313269 | + | 7 | 7 | 15_139 | 563 | 372 | Compositional bias | Note=Pro-rich |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000395068 | + | 7 | 7 | 15_139 | 563 | 372 | Compositional bias | Note=Pro-rich |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000313269 | + | 7 | 7 | 165_185 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000313269 | + | 7 | 7 | 197_217 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000313269 | + | 7 | 7 | 228_248 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000313269 | + | 7 | 7 | 253_273 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000313269 | + | 7 | 7 | 283_303 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000313269 | + | 7 | 7 | 307_327 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000313269 | + | 7 | 7 | 346_366 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000395068 | + | 7 | 7 | 165_185 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000395068 | + | 7 | 7 | 197_217 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000395068 | + | 7 | 7 | 228_248 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000395068 | + | 7 | 7 | 253_273 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000395068 | + | 7 | 7 | 283_303 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000395068 | + | 7 | 7 | 307_327 | 563 | 372 | Transmembrane | Helical |
Hgene | GRINA | chr8:145067583 | chr11:1018770 | ENST00000395068 | + | 7 | 7 | 346_366 | 563 | 372 | Transmembrane | Helical |
Tgene | >MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 2069_2275 | 1343 | 2440 | Compositional bias | Note=Ser-rich |
Tgene | >MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 2349_2438 | 1343 | 2440 | Domain | CTCK |
Tgene | >MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 1607_1953 | 1343 | 2440 | Region | Note=Approximate repeats |
Tgene | >MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 1561_1738 | 1343 | 2440 | Repeat | Note=1%3B truncated |
Tgene | >MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 1785_1953 | 1343 | 2440 | Repeat | Note=2 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 1241_1664 | 1343 | 2440 | Compositional bias | Note=Pro-rich |
Tgene | MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 1246_2344 | 1343 | 2440 | Compositional bias | Note=Thr-rich |
Tgene | MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 302_357 | 1343 | 2440 | Domain | Note=TIL |
Tgene | MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 396_608 | 1343 | 2440 | Domain | VWFD 2 |
Tgene | MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 44_246 | 1343 | 2440 | Domain | VWFD 1 |
Tgene | MUC6 | chr8:145067583 | chr11:1018770 | ENST00000421673 | - | 29 | 33 | 867_1075 | 1343 | 2440 | Domain | VWFD 3 |
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FusionGeneSequence for GRINA_MUC6 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_GRINA_ENST00000313269_chr8_145067583_+_MUC6_ENST00000421673_chr11_1018770_-_1660aa MSHEKSFLVSGDNYPPPNPGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGPYPQEGYP QGPYPQGGYPQGPYPQSPFPPNPYGQPQVFPGQDPDSPQHGNYQEEGPPSYYDNQDFPATNWDDKSIRQAFIRKVFLVLTLQLSVTLSTV SVFTFVAEVKGFVRENVWTYYVSYAVFFISLIVLSCCGDFRRKHPWNLVALSVLTASLSYMVGMIASFYNTEAVIMAVGITTAVCFTVVI FSMQTRYDFTSCMGVLLVSMVVLFIFAILCIFIRNRILEIVYASLGALLFTCFLAVDTQLLLGNKQLSLSPEEYVFAALNLYTDIINIFL YILTIIGRAKEXPSSSSLCPLRWHGWPGPCPWHGSASCTSPLSCPQAQPREKDASLQPSCMYTADTSIWTRCGHSMAPLVLPPPPRGTKA TFPCHLLSTHCCMSPVCQPTPGTGGSTRSRGEGLSQEVRVHVFPPVPAPQPGVEHPSPPPHPPGVLPSGDMRSGGLIPVLSPEGREDGMF QGRGKPSSQFVVSEIPINGICSLPKSTNQELPGTTATQTTGPRPTPASTTGPTTPQPGQPTRPTATETTQTRTTTEYTTPQTPHTTHSPP TAGSPVPSTGPVTATSFHATTTYPTPSHPETTLPTHVPPFSTSLVTPSTHTVITPTHAQMATSASNHSAPTGTIPPPTTLKATGSTHTAP PITPTTSGTSQAHSSFSTNKTPTSLHSHTSSTHHPEVTPTSTTTITPNPTSTRTRTPVAHTNSATSSRPPPPFTTHSPPTGSSPFSSTGP MTATSFKTTTTYPTPSHPQTTLPTHVPPFSTSLVTPSTHTVITPTHAQMATSASIHSMPTGTIPPPTTLKATGSTHTAPTMTLTTSGTSQ ALSSLNTAKTSTSLHSHTSSTHHAEATSTSTTNITPNPTSTGTPPMTVTTSGTSQSRSSFSTAKTSTSLHSHTSSTHHPEVTSTSTTSIT PNHTSTGTRTPVAHTTSATSSRLPTPFTTHSPPTGTTPISSTGPVTATSFQTTTTYPTPSHPHTTLPTHVPSFSTSLVTPSTHTVIIPTH TQMATSASIHSMPTGTIPPPTTIKATGSTHTAPPMTPTTSGTSQSPSSFSTAKTSTSLPYHTSSTHHPEVTPTSTTNITPKHTSTGTRTP VAHTTSASSSRLPTPFTTHSPPTGSSPFSSTGPMTATSFQTTTTYPTPSHPQTTLPTHVPPFSTSLVTPSTHTVIITTHTQMATSASIHS TPTGTVPPPTTLKATGSTHTAPPMTVTTSGTSQTHSSFSTATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTPVSTTNQLSSS FSPSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSFVSAPVHSTTLSSGSHSSLSTHPTTASVSASPLFPSSPAASTTIRATLPHTISSPF TLSALLPISTVTVSPTPSSHLASSTIAFPSTPRTTASTHTAPAFSSQSTTSRSTSLTTRVPTSGFVSLTSGVTGIPTSPVTNLTTRHPGP TLSPTTRFLTSSLTAHGSTPASAPVSSLGTPTPTSPGVCSVREQQEEITFKGCMANVTVTRCEGACISAASFNIITQQVDARCSCCRPLH >In-frame_GRINA_ENST00000395068_chr8_145067583_+_MUC6_ENST00000421673_chr11_1018770_-_1660aa MSHEKSFLVSGDNYPPPNPGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGPYPQEGYP QGPYPQGGYPQGPYPQSPFPPNPYGQPQVFPGQDPDSPQHGNYQEEGPPSYYDNQDFPATNWDDKSIRQAFIRKVFLVLTLQLSVTLSTV SVFTFVAEVKGFVRENVWTYYVSYAVFFISLIVLSCCGDFRRKHPWNLVALSVLTASLSYMVGMIASFYNTEAVIMAVGITTAVCFTVVI FSMQTRYDFTSCMGVLLVSMVVLFIFAILCIFIRNRILEIVYASLGALLFTCFLAVDTQLLLGNKQLSLSPEEYVFAALNLYTDIINIFL YILTIIGRAKEXPSSSSLCPLRWHGWPGPCPWHGSASCTSPLSCPQAQPREKDASLQPSCMYTADTSIWTRCGHSMAPLVLPPPPRGTKA TFPCHLLSTHCCMSPVCQPTPGTGGSTRSRGEGLSQEVRVHVFPPVPAPQPGVEHPSPPPHPPGVLPSGDMRSGGLIPVLSPEGREDGMF QGRGKPSSQFVVSEIPINGICSLPKSTNQELPGTTATQTTGPRPTPASTTGPTTPQPGQPTRPTATETTQTRTTTEYTTPQTPHTTHSPP TAGSPVPSTGPVTATSFHATTTYPTPSHPETTLPTHVPPFSTSLVTPSTHTVITPTHAQMATSASNHSAPTGTIPPPTTLKATGSTHTAP PITPTTSGTSQAHSSFSTNKTPTSLHSHTSSTHHPEVTPTSTTTITPNPTSTRTRTPVAHTNSATSSRPPPPFTTHSPPTGSSPFSSTGP MTATSFKTTTTYPTPSHPQTTLPTHVPPFSTSLVTPSTHTVITPTHAQMATSASIHSMPTGTIPPPTTLKATGSTHTAPTMTLTTSGTSQ ALSSLNTAKTSTSLHSHTSSTHHAEATSTSTTNITPNPTSTGTPPMTVTTSGTSQSRSSFSTAKTSTSLHSHTSSTHHPEVTSTSTTSIT PNHTSTGTRTPVAHTTSATSSRLPTPFTTHSPPTGTTPISSTGPVTATSFQTTTTYPTPSHPHTTLPTHVPSFSTSLVTPSTHTVIIPTH TQMATSASIHSMPTGTIPPPTTIKATGSTHTAPPMTPTTSGTSQSPSSFSTAKTSTSLPYHTSSTHHPEVTPTSTTNITPKHTSTGTRTP VAHTTSASSSRLPTPFTTHSPPTGSSPFSSTGPMTATSFQTTTTYPTPSHPQTTLPTHVPPFSTSLVTPSTHTVIITTHTQMATSASIHS TPTGTVPPPTTLKATGSTHTAPPMTVTTSGTSQTHSSFSTATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTPVSTTNQLSSS FSPSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSFVSAPVHSTTLSSGSHSSLSTHPTTASVSASPLFPSSPAASTTIRATLPHTISSPF TLSALLPISTVTVSPTPSSHLASSTIAFPSTPRTTASTHTAPAFSSQSTTSRSTSLTTRVPTSGFVSLTSGVTGIPTSPVTNLTTRHPGP TLSPTTRFLTSSLTAHGSTPASAPVSSLGTPTPTSPGVCSVREQQEEITFKGCMANVTVTRCEGACISAASFNIITQQVDARCSCCRPLH |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_GRINA_ENST00000313269_chr8_145067583_+_MUC6_ENST00000421673_chr11_1018770_-_4980nt ATGTCCCATGAAAAGAGTTTTTTGGTGTCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGGGGGGCCCCAGCCACCCATGCCC CCCTATGCTCAGCCTCCCTACCCTGGGGCCCCTTACCCACAGCCCCCTTTCCAGCCCTCCCCCTACGGTCAGCCAGGGTACCCCCATGGC CCCAGCCCCTACCCCCAAGGGGGCTACCCACAGGGTCCCTACCCCCAAGGGGGCTACCCACAGGGCCCCTACCCACAAGAGGGCTACCCA CAGGGCCCCTACCCCCAAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCCCCCCCAACCCCTATGGACAGCCACAGGTCTTC CCAGGACAAGACCCTGACTCACCCCAGCATGGAAACTACCAGGAGGAGGGTCCCCCATCCTACTATGACAACCAGGACTTCCCTGCCACC AACTGGGATGACAAGAGCATCCGACAGGCCTTCATCCGCAAGGTGTTCCTAGTGCTGACCTTGCAGCTGTCGGTGACCCTGTCCACGGTG TCTGTGTTCACTTTTGTTGCGGAGGTGAAGGGCTTTGTCCGGGAGAATGTCTGGACCTACTATGTCTCCTATGCTGTCTTCTTCATCTCT CTCATCGTCCTCAGCTGTTGTGGGGACTTCCGGCGAAAGCACCCCTGGAACCTTGTTGCACTGTCGGTCCTGACCGCCAGCCTGTCGTAC ATGGTGGGGATGATCGCCAGCTTCTACAACACCGAGGCAGTCATCATGGCCGTGGGCATCACCACAGCCGTCTGCTTCACCGTCGTCATC TTCTCCATGCAGACCCGCTACGACTTCACCTCATGCATGGGCGTGCTCCTGGTGAGCATGGTGGTGCTCTTCATCTTCGCCATTCTCTGC ATCTTCATCCGGAACCGCATCCTGGAGATCGTGTACGCCTCACTGGGCGCTCTGCTCTTCACCTGCTTCCTCGCAGTGGACACCCAGCTG CTACTGGGGAACAAGCAGCTGTCCCTGAGCCCAGAAGAGTATGTGTTTGCTGCGCTGAACCTGTACACAGACATCATCAACATCTTCCTG TACATCCTCACCATCATTGGCCGCGCCAAGGAGTAGCCGAGCTCCAGCTCGCTGTGCCCGCTCAGGTGGCACGGCTGGCCTGGACCCTGC CCCTGGCACGGCAGTGCCAGCTGTACTTCCCCTCTCTCTTGTCCCCAGGCACAGCCTAGGGAAAAGGATGCCTCTCTCCAACCCTCCTGT ATGTACACTGCAGATACTTCCATTTGGACCCGCTGTGGCCACAGCATGGCCCCTTTAGTCCTCCCGCCCCCGCCAAGGGGCACCAAGGCC ACGTTTCCGTGCCACCTCCTGTCTACTCATTGTTGCATGAGCCCTGTCTGCCAGCCCACCCCAGGGACTGGGGGCAGCACCAGGTCCCGG GGAGAGGGATTGAGCCAAGAGGTGAGGGTGCACGTCTTCCCTCCTGTCCCAGCTCCCCAGCCTGGCGTAGAGCACCCCTCCCCTCCCCCC CACCCCCCTGGAGTGCTGCCCTCTGGGGACATGCGGAGTGGGGGTCTTATCCCTGTGCTGAGCCCTGAGGGCAGAGAGGATGGCATGTTT CAGGGGAGGGGGAAGCCTTCCTCTCAATTTGTTGTCAGTGAAATTCCAATAAATGGGATTTGCTCTCTGCCAAAATCGACCAATCAGGAA CTGCCAGGAACAACGGCCACCCAGACGACAGGCCCACGTCCAACCCCAGCAAGCACCACAGGCCCAACCACCCCACAGCCAGGACAACCC ACGAGGCCCACAGCCACAGAGACCACTCAAACAAGAACGACTACTGAATACACAACGCCCCAAACCCCACACACCACACACTCCCCGCCT ACGGCGGGGAGTCCCGTCCCTTCCACAGGTCCTGTCACTGCAACATCTTTCCATGCCACCACTACCTATCCAACCCCATCACACCCTGAG ACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCACGCACAGATG GCCACATCTGCCTCCAACCACTCAGCGCCAACAGGTACCATTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCACACAGCCCCA CCAATAACGCCGACCACCAGTGGGACCAGCCAAGCCCACAGCTCATTCAGCACAAACAAAACACCTACCTCGCTACATTCACACACTTCC TCCACACACCATCCTGAAGTCACCCCAACTTCTACTACCACGATTACTCCCAACCCCACTAGTACACGCACCAGAACCCCTGTGGCCCAC ACCAACTCAGCCACCAGCAGCAGGCCACCACCACCCTTCACCACACACTCCCCACCTACAGGGAGCAGTCCCTTCTCTTCCACAGGTCCC ATGACGGCAACATCCTTCAAGACCACCACTACCTATCCAACCCCATCACACCCTCAGACCACACTTCCCACTCACGTTCCACCTTTCTCC ACCTCTTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCATGCACAGATGGCCACTTCTGCCTCCATCCACTCAATGCCAACA GGCACGATTCCTCCACCGACAACGCTCAAGGCCACAGGGTCCACCCACACAGCGCCAACAATGACGCTGACCACCAGCGGGACCAGCCAA GCCCTGAGCTCATTAAACACAGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATGCTGAAGCCACCTCAACTTCT ACCACCAACATCACCCCCAACCCCACCAGTACAGGAACCCCACCAATGACAGTGACCACCAGTGGGACCAGCCAATCCCGAAGCTCATTT AGCACGGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATCCTGAAGTCACCTCAACTTCTACCACCAGCATCACC CCCAACCACACCAGTACAGGCACCAGAACCCCTGTGGCCCACACCACGTCGGCCACCAGCAGCAGGCTACCCACACCCTTCACCACACAC TCCCCACCTACAGGGACCACTCCCATCTCTTCCACAGGTCCTGTCACTGCAACATCCTTCCAGACCACCACTACCTATCCAACCCCATCA CACCCTCACACCACACTTCCCACTCACGTTCCATCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACGGTCATCATCCCTACCCAC ACACAGATGGCCACTTCTGCCTCCATCCACTCAATGCCAACAGGCACCATTCCTCCACCGACCACGATCAAGGCCACAGGGTCCACCCAC ACAGCCCCACCAATGACACCGACCACCAGTGGGACCAGCCAATCCCCAAGCTCATTTAGCACGGCCAAAACTTCTACATCCCTACCTTAC CACACTTCCTCAACACACCATCCTGAAGTCACCCCAACTTCTACCACCAACATCACCCCCAAACACACCAGTACAGGCACCAGAACCCCT GTGGCCCACACCACCTCGGCCAGCAGCAGCAGGCTACCCACACCCTTCACCACACACTCCCCACCTACAGGGAGCAGTCCCTTCTCTTCC ACAGGTCCTATGACTGCAACATCCTTCCAGACCACCACTACCTATCCAACCCCATCACACCCTCAGACCACACTTCCCACTCACGTTCCA CCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCATCACTACCCACACACAGATGGCCACTTCTGCCTCCATCCACTCA ACGCCAACAGGCACCGTTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCACACAGCCCCACCAATGACAGTGACCACCAGTGGG ACCAGCCAAACCCACAGCTCATTCAGCACAGCTACAGCCTCTTCTTCCTTCATATCCTCCTCGTCTTGGCTGCCTCAGAACTCTAGCTCA AGGCCACCGTCATCACCTATCACCACACAACTCCCCCACTTGAGTTCTGCAACCACTCCTGTTTCCACAACTAATCAGCTGTCCTCCTCA TTTTCTCCCAGTCCTTCTGCCCCCTCTACTGTTTCTTCTTATGTGCCCTCCTCCCACTCCTCTCCCCAGACTTCATCGCCTTCTGTTGGC ACATCTTCCTCTTTCGTGTCCGCCCCCGTGCACTCCACAACCCTGAGCTCGGGGTCACACTCCTCATTGTCCACTCATCCCACGACTGCA TCAGTGTCTGCATCTCCTCTTTTTCCTTCTTCTCCAGCTGCCTCTACTACCATTAGGGCCACTCTCCCCCACACTATCTCCTCTCCTTTC ACCCTCTCTGCTCTACTCCCCATATCCACTGTTACCGTGTCTCCCACCCCATCCAGCCACCTAGCCTCCAGCACCATTGCATTTCCGTCC ACGCCCAGGACCACGGCCAGCACCCACACCGCCCCTGCCTTCTCCTCTCAGTCCACCACCTCGCGGTCCACTTCTCTCACCACCCGAGTT CCCACATCAGGCTTTGTGTCACTCACCTCGGGGGTGACGGGTATCCCCACCTCTCCAGTCACCAACCTTACCACCAGGCACCCTGGTCCC ACCTTGTCGCCTACCACACGGTTCCTGACCAGCTCCCTCACTGCCCATGGAAGCACCCCTGCTTCTGCCCCGGTATCTTCTCTCGGGACA CCTACGCCCACCTCACCCGGGGTCTGCAGTGTGCGGGAGCAGCAGGAGGAGATCACGTTCAAGGGGTGCATGGCGAACGTGACGGTAACC CGCTGTGAGGGCGCCTGCATTTCCGCTGCCAGCTTCAACATCATCACCCAGCAGGTGGATGCCCGCTGCAGCTGCTGCCGCCCCCTCCAC TCCTATGAGCAGCAGCTGGAGCTGCCCTGCCCCGATCCCAGCACGCCTGGCCGGCGGCTCGTACTCACCCTGCAGGTGTTCAGCCACTGC >In-frame_GRINA_ENST00000395068_chr8_145067583_+_MUC6_ENST00000421673_chr11_1018770_-_4980nt ATGTCCCATGAAAAGAGTTTTTTGGTGTCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGGGGGGCCCCAGCCACCCATGCCC CCCTATGCTCAGCCTCCCTACCCTGGGGCCCCTTACCCACAGCCCCCTTTCCAGCCCTCCCCCTACGGTCAGCCAGGGTACCCCCATGGC CCCAGCCCCTACCCCCAAGGGGGCTACCCACAGGGTCCCTACCCCCAAGGGGGCTACCCACAGGGCCCCTACCCACAAGAGGGCTACCCA CAGGGCCCCTACCCCCAAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCCCCCCCAACCCCTATGGACAGCCACAGGTCTTC CCAGGACAAGACCCTGACTCACCCCAGCATGGAAACTACCAGGAGGAGGGTCCCCCATCCTACTATGACAACCAGGACTTCCCTGCCACC AACTGGGATGACAAGAGCATCCGACAGGCCTTCATCCGCAAGGTGTTCCTAGTGCTGACCTTGCAGCTGTCGGTGACCCTGTCCACGGTG TCTGTGTTCACTTTTGTTGCGGAGGTGAAGGGCTTTGTCCGGGAGAATGTCTGGACCTACTATGTCTCCTATGCTGTCTTCTTCATCTCT CTCATCGTCCTCAGCTGTTGTGGGGACTTCCGGCGAAAGCACCCCTGGAACCTTGTTGCACTGTCGGTCCTGACCGCCAGCCTGTCGTAC ATGGTGGGGATGATCGCCAGCTTCTACAACACCGAGGCAGTCATCATGGCCGTGGGCATCACCACAGCCGTCTGCTTCACCGTCGTCATC TTCTCCATGCAGACCCGCTACGACTTCACCTCATGCATGGGCGTGCTCCTGGTGAGCATGGTGGTGCTCTTCATCTTCGCCATTCTCTGC ATCTTCATCCGGAACCGCATCCTGGAGATCGTGTACGCCTCACTGGGCGCTCTGCTCTTCACCTGCTTCCTCGCAGTGGACACCCAGCTG CTACTGGGGAACAAGCAGCTGTCCCTGAGCCCAGAAGAGTATGTGTTTGCTGCGCTGAACCTGTACACAGACATCATCAACATCTTCCTG TACATCCTCACCATCATTGGCCGCGCCAAGGAGTAGCCGAGCTCCAGCTCGCTGTGCCCGCTCAGGTGGCACGGCTGGCCTGGACCCTGC CCCTGGCACGGCAGTGCCAGCTGTACTTCCCCTCTCTCTTGTCCCCAGGCACAGCCTAGGGAAAAGGATGCCTCTCTCCAACCCTCCTGT ATGTACACTGCAGATACTTCCATTTGGACCCGCTGTGGCCACAGCATGGCCCCTTTAGTCCTCCCGCCCCCGCCAAGGGGCACCAAGGCC ACGTTTCCGTGCCACCTCCTGTCTACTCATTGTTGCATGAGCCCTGTCTGCCAGCCCACCCCAGGGACTGGGGGCAGCACCAGGTCCCGG GGAGAGGGATTGAGCCAAGAGGTGAGGGTGCACGTCTTCCCTCCTGTCCCAGCTCCCCAGCCTGGCGTAGAGCACCCCTCCCCTCCCCCC CACCCCCCTGGAGTGCTGCCCTCTGGGGACATGCGGAGTGGGGGTCTTATCCCTGTGCTGAGCCCTGAGGGCAGAGAGGATGGCATGTTT CAGGGGAGGGGGAAGCCTTCCTCTCAATTTGTTGTCAGTGAAATTCCAATAAATGGGATTTGCTCTCTGCCAAAATCGACCAATCAGGAA CTGCCAGGAACAACGGCCACCCAGACGACAGGCCCACGTCCAACCCCAGCAAGCACCACAGGCCCAACCACCCCACAGCCAGGACAACCC ACGAGGCCCACAGCCACAGAGACCACTCAAACAAGAACGACTACTGAATACACAACGCCCCAAACCCCACACACCACACACTCCCCGCCT ACGGCGGGGAGTCCCGTCCCTTCCACAGGTCCTGTCACTGCAACATCTTTCCATGCCACCACTACCTATCCAACCCCATCACACCCTGAG ACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCACGCACAGATG GCCACATCTGCCTCCAACCACTCAGCGCCAACAGGTACCATTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCACACAGCCCCA CCAATAACGCCGACCACCAGTGGGACCAGCCAAGCCCACAGCTCATTCAGCACAAACAAAACACCTACCTCGCTACATTCACACACTTCC TCCACACACCATCCTGAAGTCACCCCAACTTCTACTACCACGATTACTCCCAACCCCACTAGTACACGCACCAGAACCCCTGTGGCCCAC ACCAACTCAGCCACCAGCAGCAGGCCACCACCACCCTTCACCACACACTCCCCACCTACAGGGAGCAGTCCCTTCTCTTCCACAGGTCCC ATGACGGCAACATCCTTCAAGACCACCACTACCTATCCAACCCCATCACACCCTCAGACCACACTTCCCACTCACGTTCCACCTTTCTCC ACCTCTTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCATGCACAGATGGCCACTTCTGCCTCCATCCACTCAATGCCAACA GGCACGATTCCTCCACCGACAACGCTCAAGGCCACAGGGTCCACCCACACAGCGCCAACAATGACGCTGACCACCAGCGGGACCAGCCAA GCCCTGAGCTCATTAAACACAGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATGCTGAAGCCACCTCAACTTCT ACCACCAACATCACCCCCAACCCCACCAGTACAGGAACCCCACCAATGACAGTGACCACCAGTGGGACCAGCCAATCCCGAAGCTCATTT AGCACGGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATCCTGAAGTCACCTCAACTTCTACCACCAGCATCACC CCCAACCACACCAGTACAGGCACCAGAACCCCTGTGGCCCACACCACGTCGGCCACCAGCAGCAGGCTACCCACACCCTTCACCACACAC TCCCCACCTACAGGGACCACTCCCATCTCTTCCACAGGTCCTGTCACTGCAACATCCTTCCAGACCACCACTACCTATCCAACCCCATCA CACCCTCACACCACACTTCCCACTCACGTTCCATCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACGGTCATCATCCCTACCCAC ACACAGATGGCCACTTCTGCCTCCATCCACTCAATGCCAACAGGCACCATTCCTCCACCGACCACGATCAAGGCCACAGGGTCCACCCAC ACAGCCCCACCAATGACACCGACCACCAGTGGGACCAGCCAATCCCCAAGCTCATTTAGCACGGCCAAAACTTCTACATCCCTACCTTAC CACACTTCCTCAACACACCATCCTGAAGTCACCCCAACTTCTACCACCAACATCACCCCCAAACACACCAGTACAGGCACCAGAACCCCT GTGGCCCACACCACCTCGGCCAGCAGCAGCAGGCTACCCACACCCTTCACCACACACTCCCCACCTACAGGGAGCAGTCCCTTCTCTTCC ACAGGTCCTATGACTGCAACATCCTTCCAGACCACCACTACCTATCCAACCCCATCACACCCTCAGACCACACTTCCCACTCACGTTCCA CCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCATCACTACCCACACACAGATGGCCACTTCTGCCTCCATCCACTCA ACGCCAACAGGCACCGTTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCACACAGCCCCACCAATGACAGTGACCACCAGTGGG ACCAGCCAAACCCACAGCTCATTCAGCACAGCTACAGCCTCTTCTTCCTTCATATCCTCCTCGTCTTGGCTGCCTCAGAACTCTAGCTCA AGGCCACCGTCATCACCTATCACCACACAACTCCCCCACTTGAGTTCTGCAACCACTCCTGTTTCCACAACTAATCAGCTGTCCTCCTCA TTTTCTCCCAGTCCTTCTGCCCCCTCTACTGTTTCTTCTTATGTGCCCTCCTCCCACTCCTCTCCCCAGACTTCATCGCCTTCTGTTGGC ACATCTTCCTCTTTCGTGTCCGCCCCCGTGCACTCCACAACCCTGAGCTCGGGGTCACACTCCTCATTGTCCACTCATCCCACGACTGCA TCAGTGTCTGCATCTCCTCTTTTTCCTTCTTCTCCAGCTGCCTCTACTACCATTAGGGCCACTCTCCCCCACACTATCTCCTCTCCTTTC ACCCTCTCTGCTCTACTCCCCATATCCACTGTTACCGTGTCTCCCACCCCATCCAGCCACCTAGCCTCCAGCACCATTGCATTTCCGTCC ACGCCCAGGACCACGGCCAGCACCCACACCGCCCCTGCCTTCTCCTCTCAGTCCACCACCTCGCGGTCCACTTCTCTCACCACCCGAGTT CCCACATCAGGCTTTGTGTCACTCACCTCGGGGGTGACGGGTATCCCCACCTCTCCAGTCACCAACCTTACCACCAGGCACCCTGGTCCC ACCTTGTCGCCTACCACACGGTTCCTGACCAGCTCCCTCACTGCCCATGGAAGCACCCCTGCTTCTGCCCCGGTATCTTCTCTCGGGACA CCTACGCCCACCTCACCCGGGGTCTGCAGTGTGCGGGAGCAGCAGGAGGAGATCACGTTCAAGGGGTGCATGGCGAACGTGACGGTAACC CGCTGTGAGGGCGCCTGCATTTCCGCTGCCAGCTTCAACATCATCACCCAGCAGGTGGATGCCCGCTGCAGCTGCTGCCGCCCCCTCCAC TCCTATGAGCAGCAGCTGGAGCTGCCCTGCCCCGATCCCAGCACGCCTGGCCGGCGGCTCGTACTCACCCTGCAGGTGTTCAGCCACTGC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_GRINA_ENST00000313269_chr8_145067583_+_MUC6_ENST00000421673_chr11_1018770_-_5893nt AAGGCCCCGCTGCGTCTTCCGAGCCGCAGGCGCAGGCCCAGCTGAGCGGCCGCCGAGCGGGTGCGGGTGCGGGCGCATCGGCCATCACCG CGCGGCCGCGCAGCGGACACCGTGCGTACCGGCCTGCGGCGCCCGGCCACCGGTGAGTCCCCGGCCCGAGCCCAGGAGCGCCTCTGACCC GCTGCGCCGCGCGGCCTGCCGCCCCCGCCCCCGCCCCCACGCGGATCTTGCGCATCCGAGCGTGGCCGCCTCGGGGGCGGACCGCGGAAC CCGAGGCCATGTCCCATGAAAAGAGTTTTTTGGTGTCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGGGGGGCCCCAGCCAC CCATGCCCCCCTATGCTCAGCCTCCCTACCCTGGGGCCCCTTACCCACAGCCCCCTTTCCAGCCCTCCCCCTACGGTCAGCCAGGGTACC CCCATGGCCCCAGCCCCTACCCCCAAGGGGGCTACCCACAGGGTCCCTACCCCCAAGGGGGCTACCCACAGGGCCCCTACCCACAAGAGG GCTACCCACAGGGCCCCTACCCCCAAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCCCCCCCAACCCCTATGGACAGCCAC AGGTCTTCCCAGGACAAGACCCTGACTCACCCCAGCATGGAAACTACCAGGAGGAGGGTCCCCCATCCTACTATGACAACCAGGACTTCC CTGCCACCAACTGGGATGACAAGAGCATCCGACAGGCCTTCATCCGCAAGGTGTTCCTAGTGCTGACCTTGCAGCTGTCGGTGACCCTGT CCACGGTGTCTGTGTTCACTTTTGTTGCGGAGGTGAAGGGCTTTGTCCGGGAGAATGTCTGGACCTACTATGTCTCCTATGCTGTCTTCT TCATCTCTCTCATCGTCCTCAGCTGTTGTGGGGACTTCCGGCGAAAGCACCCCTGGAACCTTGTTGCACTGTCGGTCCTGACCGCCAGCC TGTCGTACATGGTGGGGATGATCGCCAGCTTCTACAACACCGAGGCAGTCATCATGGCCGTGGGCATCACCACAGCCGTCTGCTTCACCG TCGTCATCTTCTCCATGCAGACCCGCTACGACTTCACCTCATGCATGGGCGTGCTCCTGGTGAGCATGGTGGTGCTCTTCATCTTCGCCA TTCTCTGCATCTTCATCCGGAACCGCATCCTGGAGATCGTGTACGCCTCACTGGGCGCTCTGCTCTTCACCTGCTTCCTCGCAGTGGACA CCCAGCTGCTACTGGGGAACAAGCAGCTGTCCCTGAGCCCAGAAGAGTATGTGTTTGCTGCGCTGAACCTGTACACAGACATCATCAACA TCTTCCTGTACATCCTCACCATCATTGGCCGCGCCAAGGAGTAGCCGAGCTCCAGCTCGCTGTGCCCGCTCAGGTGGCACGGCTGGCCTG GACCCTGCCCCTGGCACGGCAGTGCCAGCTGTACTTCCCCTCTCTCTTGTCCCCAGGCACAGCCTAGGGAAAAGGATGCCTCTCTCCAAC CCTCCTGTATGTACACTGCAGATACTTCCATTTGGACCCGCTGTGGCCACAGCATGGCCCCTTTAGTCCTCCCGCCCCCGCCAAGGGGCA CCAAGGCCACGTTTCCGTGCCACCTCCTGTCTACTCATTGTTGCATGAGCCCTGTCTGCCAGCCCACCCCAGGGACTGGGGGCAGCACCA GGTCCCGGGGAGAGGGATTGAGCCAAGAGGTGAGGGTGCACGTCTTCCCTCCTGTCCCAGCTCCCCAGCCTGGCGTAGAGCACCCCTCCC CTCCCCCCCACCCCCCTGGAGTGCTGCCCTCTGGGGACATGCGGAGTGGGGGTCTTATCCCTGTGCTGAGCCCTGAGGGCAGAGAGGATG GCATGTTTCAGGGGAGGGGGAAGCCTTCCTCTCAATTTGTTGTCAGTGAAATTCCAATAAATGGGATTTGCTCTCTGCCAAAATCGACCA ATCAGGAACTGCCAGGAACAACGGCCACCCAGACGACAGGCCCACGTCCAACCCCAGCAAGCACCACAGGCCCAACCACCCCACAGCCAG GACAACCCACGAGGCCCACAGCCACAGAGACCACTCAAACAAGAACGACTACTGAATACACAACGCCCCAAACCCCACACACCACACACT CCCCGCCTACGGCGGGGAGTCCCGTCCCTTCCACAGGTCCTGTCACTGCAACATCTTTCCATGCCACCACTACCTATCCAACCCCATCAC ACCCTGAGACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCACG CACAGATGGCCACATCTGCCTCCAACCACTCAGCGCCAACAGGTACCATTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCACA CAGCCCCACCAATAACGCCGACCACCAGTGGGACCAGCCAAGCCCACAGCTCATTCAGCACAAACAAAACACCTACCTCGCTACATTCAC ACACTTCCTCCACACACCATCCTGAAGTCACCCCAACTTCTACTACCACGATTACTCCCAACCCCACTAGTACACGCACCAGAACCCCTG TGGCCCACACCAACTCAGCCACCAGCAGCAGGCCACCACCACCCTTCACCACACACTCCCCACCTACAGGGAGCAGTCCCTTCTCTTCCA CAGGTCCCATGACGGCAACATCCTTCAAGACCACCACTACCTATCCAACCCCATCACACCCTCAGACCACACTTCCCACTCACGTTCCAC CTTTCTCCACCTCTTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCATGCACAGATGGCCACTTCTGCCTCCATCCACTCAA TGCCAACAGGCACGATTCCTCCACCGACAACGCTCAAGGCCACAGGGTCCACCCACACAGCGCCAACAATGACGCTGACCACCAGCGGGA CCAGCCAAGCCCTGAGCTCATTAAACACAGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATGCTGAAGCCACCT CAACTTCTACCACCAACATCACCCCCAACCCCACCAGTACAGGAACCCCACCAATGACAGTGACCACCAGTGGGACCAGCCAATCCCGAA GCTCATTTAGCACGGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATCCTGAAGTCACCTCAACTTCTACCACCA GCATCACCCCCAACCACACCAGTACAGGCACCAGAACCCCTGTGGCCCACACCACGTCGGCCACCAGCAGCAGGCTACCCACACCCTTCA CCACACACTCCCCACCTACAGGGACCACTCCCATCTCTTCCACAGGTCCTGTCACTGCAACATCCTTCCAGACCACCACTACCTATCCAA CCCCATCACACCCTCACACCACACTTCCCACTCACGTTCCATCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACGGTCATCATCC CTACCCACACACAGATGGCCACTTCTGCCTCCATCCACTCAATGCCAACAGGCACCATTCCTCCACCGACCACGATCAAGGCCACAGGGT CCACCCACACAGCCCCACCAATGACACCGACCACCAGTGGGACCAGCCAATCCCCAAGCTCATTTAGCACGGCCAAAACTTCTACATCCC TACCTTACCACACTTCCTCAACACACCATCCTGAAGTCACCCCAACTTCTACCACCAACATCACCCCCAAACACACCAGTACAGGCACCA GAACCCCTGTGGCCCACACCACCTCGGCCAGCAGCAGCAGGCTACCCACACCCTTCACCACACACTCCCCACCTACAGGGAGCAGTCCCT TCTCTTCCACAGGTCCTATGACTGCAACATCCTTCCAGACCACCACTACCTATCCAACCCCATCACACCCTCAGACCACACTTCCCACTC ACGTTCCACCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCATCACTACCCACACACAGATGGCCACTTCTGCCTCCA TCCACTCAACGCCAACAGGCACCGTTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCACACAGCCCCACCAATGACAGTGACCA CCAGTGGGACCAGCCAAACCCACAGCTCATTCAGCACAGCTACAGCCTCTTCTTCCTTCATATCCTCCTCGTCTTGGCTGCCTCAGAACT CTAGCTCAAGGCCACCGTCATCACCTATCACCACACAACTCCCCCACTTGAGTTCTGCAACCACTCCTGTTTCCACAACTAATCAGCTGT CCTCCTCATTTTCTCCCAGTCCTTCTGCCCCCTCTACTGTTTCTTCTTATGTGCCCTCCTCCCACTCCTCTCCCCAGACTTCATCGCCTT CTGTTGGCACATCTTCCTCTTTCGTGTCCGCCCCCGTGCACTCCACAACCCTGAGCTCGGGGTCACACTCCTCATTGTCCACTCATCCCA CGACTGCATCAGTGTCTGCATCTCCTCTTTTTCCTTCTTCTCCAGCTGCCTCTACTACCATTAGGGCCACTCTCCCCCACACTATCTCCT CTCCTTTCACCCTCTCTGCTCTACTCCCCATATCCACTGTTACCGTGTCTCCCACCCCATCCAGCCACCTAGCCTCCAGCACCATTGCAT TTCCGTCCACGCCCAGGACCACGGCCAGCACCCACACCGCCCCTGCCTTCTCCTCTCAGTCCACCACCTCGCGGTCCACTTCTCTCACCA CCCGAGTTCCCACATCAGGCTTTGTGTCACTCACCTCGGGGGTGACGGGTATCCCCACCTCTCCAGTCACCAACCTTACCACCAGGCACC CTGGTCCCACCTTGTCGCCTACCACACGGTTCCTGACCAGCTCCCTCACTGCCCATGGAAGCACCCCTGCTTCTGCCCCGGTATCTTCTC TCGGGACACCTACGCCCACCTCACCCGGGGTCTGCAGTGTGCGGGAGCAGCAGGAGGAGATCACGTTCAAGGGGTGCATGGCGAACGTGA CGGTAACCCGCTGTGAGGGCGCCTGCATTTCCGCTGCCAGCTTCAACATCATCACCCAGCAGGTGGATGCCCGCTGCAGCTGCTGCCGCC CCCTCCACTCCTATGAGCAGCAGCTGGAGCTGCCCTGCCCCGATCCCAGCACGCCTGGCCGGCGGCTCGTACTCACCCTGCAGGTGTTCA GCCACTGCGTGTGCAGCTCTGTGGCCTGTGGAGACTAGCAGGGTCGCTGCCTGCTCTCCTGGGGCTGAAGGACTGCAGATGACAGACAGG AAAACACCCACCAGCCCCCTTCCCGCTTGTGCCAGCAGCTGCTTTCCTGGTCACCAGGCCTGGCCCCCAAGTGCCCTGGGCCGTGGCTCC CTGGGGCACCGGTTGGAGAGGGGCTGCCAAGCAGGGGCTCAGACTACCACACTCCTGCAGACCCTGAGCCAGCAGAGAGGGACTGAGGCG GACAGTGGTCACGGACCTCCCAGGCACACAGGGCACTCCCGACCACCCCTGCCCACCGTCCAACACCTCCCAGCCCCTGAACTTGGCCCC AGCCCTGCTGGGCCCAGAACCCTGCAGATGAAGCCACAGAGCAGGCGCTCGACCAGACCCATCAGGGGCGAGGAGGGCACGGAAACCTGT GCCGAGATGGGGGCAAGAGGCCCAGGCAGCCACCAGCACAGAGAAGAGGAGATCCCCAGAGTCAGGGAGGGCAGAGGGTGGCAGCGAGGG CAGGGCAGCCGCCCCCGCTCCCAGCCAGGCAGAAGGCCCCCACCAGCACCACACCCATCCCCAGCAGCCTGTCCTTGGGAGAGGGCGTCA >In-frame_GRINA_ENST00000395068_chr8_145067583_+_MUC6_ENST00000421673_chr11_1018770_-_5739nt TGAGCGGCCGCCGAGCGGGTGCGGGTGCGGGCGCATCGGCCATCACCGCGCGGCCGCGCAGCGGACACCGTGCGTACCGGCCTGCGGCGC CCGGCCACCGGGGCGGACCGCGGAACCCGAGGCCATGTCCCATGAAAAGAGTTTTTTGGTGTCTGGGGACAACTATCCTCCCCCCAACCC TGGATATCCGGGGGGGCCCCAGCCACCCATGCCCCCCTATGCTCAGCCTCCCTACCCTGGGGCCCCTTACCCACAGCCCCCTTTCCAGCC CTCCCCCTACGGTCAGCCAGGGTACCCCCATGGCCCCAGCCCCTACCCCCAAGGGGGCTACCCACAGGGTCCCTACCCCCAAGGGGGCTA CCCACAGGGCCCCTACCCACAAGAGGGCTACCCACAGGGCCCCTACCCCCAAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTT CCCCCCCAACCCCTATGGACAGCCACAGGTCTTCCCAGGACAAGACCCTGACTCACCCCAGCATGGAAACTACCAGGAGGAGGGTCCCCC ATCCTACTATGACAACCAGGACTTCCCTGCCACCAACTGGGATGACAAGAGCATCCGACAGGCCTTCATCCGCAAGGTGTTCCTAGTGCT GACCTTGCAGCTGTCGGTGACCCTGTCCACGGTGTCTGTGTTCACTTTTGTTGCGGAGGTGAAGGGCTTTGTCCGGGAGAATGTCTGGAC CTACTATGTCTCCTATGCTGTCTTCTTCATCTCTCTCATCGTCCTCAGCTGTTGTGGGGACTTCCGGCGAAAGCACCCCTGGAACCTTGT TGCACTGTCGGTCCTGACCGCCAGCCTGTCGTACATGGTGGGGATGATCGCCAGCTTCTACAACACCGAGGCAGTCATCATGGCCGTGGG CATCACCACAGCCGTCTGCTTCACCGTCGTCATCTTCTCCATGCAGACCCGCTACGACTTCACCTCATGCATGGGCGTGCTCCTGGTGAG CATGGTGGTGCTCTTCATCTTCGCCATTCTCTGCATCTTCATCCGGAACCGCATCCTGGAGATCGTGTACGCCTCACTGGGCGCTCTGCT CTTCACCTGCTTCCTCGCAGTGGACACCCAGCTGCTACTGGGGAACAAGCAGCTGTCCCTGAGCCCAGAAGAGTATGTGTTTGCTGCGCT GAACCTGTACACAGACATCATCAACATCTTCCTGTACATCCTCACCATCATTGGCCGCGCCAAGGAGTAGCCGAGCTCCAGCTCGCTGTG CCCGCTCAGGTGGCACGGCTGGCCTGGACCCTGCCCCTGGCACGGCAGTGCCAGCTGTACTTCCCCTCTCTCTTGTCCCCAGGCACAGCC TAGGGAAAAGGATGCCTCTCTCCAACCCTCCTGTATGTACACTGCAGATACTTCCATTTGGACCCGCTGTGGCCACAGCATGGCCCCTTT AGTCCTCCCGCCCCCGCCAAGGGGCACCAAGGCCACGTTTCCGTGCCACCTCCTGTCTACTCATTGTTGCATGAGCCCTGTCTGCCAGCC CACCCCAGGGACTGGGGGCAGCACCAGGTCCCGGGGAGAGGGATTGAGCCAAGAGGTGAGGGTGCACGTCTTCCCTCCTGTCCCAGCTCC CCAGCCTGGCGTAGAGCACCCCTCCCCTCCCCCCCACCCCCCTGGAGTGCTGCCCTCTGGGGACATGCGGAGTGGGGGTCTTATCCCTGT GCTGAGCCCTGAGGGCAGAGAGGATGGCATGTTTCAGGGGAGGGGGAAGCCTTCCTCTCAATTTGTTGTCAGTGAAATTCCAATAAATGG GATTTGCTCTCTGCCAAAATCGACCAATCAGGAACTGCCAGGAACAACGGCCACCCAGACGACAGGCCCACGTCCAACCCCAGCAAGCAC CACAGGCCCAACCACCCCACAGCCAGGACAACCCACGAGGCCCACAGCCACAGAGACCACTCAAACAAGAACGACTACTGAATACACAAC GCCCCAAACCCCACACACCACACACTCCCCGCCTACGGCGGGGAGTCCCGTCCCTTCCACAGGTCCTGTCACTGCAACATCTTTCCATGC CACCACTACCTATCCAACCCCATCACACCCTGAGACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCCTTGGTGACTCCAAGTAC TCACACAGTCATCACCCCTACCCACGCACAGATGGCCACATCTGCCTCCAACCACTCAGCGCCAACAGGTACCATTCCTCCACCAACAAC GCTCAAGGCCACAGGGTCCACCCACACAGCCCCACCAATAACGCCGACCACCAGTGGGACCAGCCAAGCCCACAGCTCATTCAGCACAAA CAAAACACCTACCTCGCTACATTCACACACTTCCTCCACACACCATCCTGAAGTCACCCCAACTTCTACTACCACGATTACTCCCAACCC CACTAGTACACGCACCAGAACCCCTGTGGCCCACACCAACTCAGCCACCAGCAGCAGGCCACCACCACCCTTCACCACACACTCCCCACC TACAGGGAGCAGTCCCTTCTCTTCCACAGGTCCCATGACGGCAACATCCTTCAAGACCACCACTACCTATCCAACCCCATCACACCCTCA GACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCTTTGGTGACTCCAAGTACTCACACAGTCATCACCCCTACCCATGCACAGAT GGCCACTTCTGCCTCCATCCACTCAATGCCAACAGGCACGATTCCTCCACCGACAACGCTCAAGGCCACAGGGTCCACCCACACAGCGCC AACAATGACGCTGACCACCAGCGGGACCAGCCAAGCCCTGAGCTCATTAAACACAGCCAAAACCTCTACATCCCTACATTCACACACTTC CTCCACACACCATGCTGAAGCCACCTCAACTTCTACCACCAACATCACCCCCAACCCCACCAGTACAGGAACCCCACCAATGACAGTGAC CACCAGTGGGACCAGCCAATCCCGAAGCTCATTTAGCACGGCCAAAACCTCTACATCCCTACATTCACACACTTCCTCCACACACCATCC TGAAGTCACCTCAACTTCTACCACCAGCATCACCCCCAACCACACCAGTACAGGCACCAGAACCCCTGTGGCCCACACCACGTCGGCCAC CAGCAGCAGGCTACCCACACCCTTCACCACACACTCCCCACCTACAGGGACCACTCCCATCTCTTCCACAGGTCCTGTCACTGCAACATC CTTCCAGACCACCACTACCTATCCAACCCCATCACACCCTCACACCACACTTCCCACTCACGTTCCATCTTTCTCCACCTCCTTGGTGAC TCCAAGTACTCACACGGTCATCATCCCTACCCACACACAGATGGCCACTTCTGCCTCCATCCACTCAATGCCAACAGGCACCATTCCTCC ACCGACCACGATCAAGGCCACAGGGTCCACCCACACAGCCCCACCAATGACACCGACCACCAGTGGGACCAGCCAATCCCCAAGCTCATT TAGCACGGCCAAAACTTCTACATCCCTACCTTACCACACTTCCTCAACACACCATCCTGAAGTCACCCCAACTTCTACCACCAACATCAC CCCCAAACACACCAGTACAGGCACCAGAACCCCTGTGGCCCACACCACCTCGGCCAGCAGCAGCAGGCTACCCACACCCTTCACCACACA CTCCCCACCTACAGGGAGCAGTCCCTTCTCTTCCACAGGTCCTATGACTGCAACATCCTTCCAGACCACCACTACCTATCCAACCCCATC ACACCCTCAGACCACACTTCCCACTCACGTTCCACCTTTCTCCACCTCCTTGGTGACTCCAAGTACTCACACAGTCATCATCACTACCCA CACACAGATGGCCACTTCTGCCTCCATCCACTCAACGCCAACAGGCACCGTTCCTCCACCAACAACGCTCAAGGCCACAGGGTCCACCCA CACAGCCCCACCAATGACAGTGACCACCAGTGGGACCAGCCAAACCCACAGCTCATTCAGCACAGCTACAGCCTCTTCTTCCTTCATATC CTCCTCGTCTTGGCTGCCTCAGAACTCTAGCTCAAGGCCACCGTCATCACCTATCACCACACAACTCCCCCACTTGAGTTCTGCAACCAC TCCTGTTTCCACAACTAATCAGCTGTCCTCCTCATTTTCTCCCAGTCCTTCTGCCCCCTCTACTGTTTCTTCTTATGTGCCCTCCTCCCA CTCCTCTCCCCAGACTTCATCGCCTTCTGTTGGCACATCTTCCTCTTTCGTGTCCGCCCCCGTGCACTCCACAACCCTGAGCTCGGGGTC ACACTCCTCATTGTCCACTCATCCCACGACTGCATCAGTGTCTGCATCTCCTCTTTTTCCTTCTTCTCCAGCTGCCTCTACTACCATTAG GGCCACTCTCCCCCACACTATCTCCTCTCCTTTCACCCTCTCTGCTCTACTCCCCATATCCACTGTTACCGTGTCTCCCACCCCATCCAG CCACCTAGCCTCCAGCACCATTGCATTTCCGTCCACGCCCAGGACCACGGCCAGCACCCACACCGCCCCTGCCTTCTCCTCTCAGTCCAC CACCTCGCGGTCCACTTCTCTCACCACCCGAGTTCCCACATCAGGCTTTGTGTCACTCACCTCGGGGGTGACGGGTATCCCCACCTCTCC AGTCACCAACCTTACCACCAGGCACCCTGGTCCCACCTTGTCGCCTACCACACGGTTCCTGACCAGCTCCCTCACTGCCCATGGAAGCAC CCCTGCTTCTGCCCCGGTATCTTCTCTCGGGACACCTACGCCCACCTCACCCGGGGTCTGCAGTGTGCGGGAGCAGCAGGAGGAGATCAC GTTCAAGGGGTGCATGGCGAACGTGACGGTAACCCGCTGTGAGGGCGCCTGCATTTCCGCTGCCAGCTTCAACATCATCACCCAGCAGGT GGATGCCCGCTGCAGCTGCTGCCGCCCCCTCCACTCCTATGAGCAGCAGCTGGAGCTGCCCTGCCCCGATCCCAGCACGCCTGGCCGGCG GCTCGTACTCACCCTGCAGGTGTTCAGCCACTGCGTGTGCAGCTCTGTGGCCTGTGGAGACTAGCAGGGTCGCTGCCTGCTCTCCTGGGG CTGAAGGACTGCAGATGACAGACAGGAAAACACCCACCAGCCCCCTTCCCGCTTGTGCCAGCAGCTGCTTTCCTGGTCACCAGGCCTGGC CCCCAAGTGCCCTGGGCCGTGGCTCCCTGGGGCACCGGTTGGAGAGGGGCTGCCAAGCAGGGGCTCAGACTACCACACTCCTGCAGACCC TGAGCCAGCAGAGAGGGACTGAGGCGGACAGTGGTCACGGACCTCCCAGGCACACAGGGCACTCCCGACCACCCCTGCCCACCGTCCAAC ACCTCCCAGCCCCTGAACTTGGCCCCAGCCCTGCTGGGCCCAGAACCCTGCAGATGAAGCCACAGAGCAGGCGCTCGACCAGACCCATCA GGGGCGAGGAGGGCACGGAAACCTGTGCCGAGATGGGGGCAAGAGGCCCAGGCAGCCACCAGCACAGAGAAGAGGAGATCCCCAGAGTCA GGGAGGGCAGAGGGTGGCAGCGAGGGCAGGGCAGCCGCCCCCGCTCCCAGCCAGGCAGAAGGCCCCCACCAGCACCACACCCATCCCCAG |
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FusionGenePPI for GRINA_MUC6 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GRINA | MUC6 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GRINA_MUC6 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GRINA_MUC6 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | MUC6 | C0038356 | Stomach Neoplasms | 1 | CTD_human |