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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 15426

FusionGeneSummary for GRIK2_CDKAL1

check button Fusion gene summary
Fusion gene informationFusion gene name: GRIK2_CDKAL1
Fusion gene ID: 15426
HgeneTgene
Gene symbol

GRIK2

CDKAL1

Gene ID

2901

54901

Gene nameglutamate ionotropic receptor kainate type subunit 5CDK5 regulatory subunit associated protein 1 like 1
SynonymsEAA2|GRIK2|GluK5|KA2-
Cytomap

19q13.2

6p22.3

Type of geneprotein-codingprotein-coding
Descriptionglutamate receptor ionotropic, kainate 5excitatory amino acid receptor 2glutamate receptor KA2threonylcarbamoyladenosine tRNA methylthiotransferasetRNA-t(6)A37 methylthiotransferase
Modification date2018052320180523
UniProtAcc

Q13002

Q5VV42

Ensembl transtripts involved in fusion geneENST00000413795, ENST00000369138, 
ENST00000421544, ENST00000358361, 
ENST00000318991, ENST00000369137, 
ENST00000369134, 		ENST00000274695, 
ENST00000378624, ENST00000378610, 
ENST00000476517, 
Fusion gene scores* DoF score7 X 3 X 4=8411 X 7 X 5=385
# samples 611
** MAII scorelog2(6/84*10)=-0.485426827170242
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(11/385*10)=-1.8073549220576
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: GRIK2 [Title/Abstract] AND CDKAL1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-OL-A5DA-01AGRIK2chr6

101847268

+CDKAL1chr6

21065279

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000413795ENST00000274695GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000413795ENST00000378624GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000413795ENST00000378610GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
5CDS-intronENST00000413795ENST00000476517GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000369138ENST00000274695GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000369138ENST00000378624GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000369138ENST00000378610GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
5CDS-intronENST00000369138ENST00000476517GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000421544ENST00000274695GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000421544ENST00000378624GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000421544ENST00000378610GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
5CDS-intronENST00000421544ENST00000476517GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000358361ENST00000274695GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000358361ENST00000378624GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000358361ENST00000378610GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
5CDS-intronENST00000358361ENST00000476517GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000318991ENST00000274695GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000318991ENST00000378624GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000318991ENST00000378610GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
5CDS-intronENST00000318991ENST00000476517GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000369137ENST00000274695GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000369137ENST00000378624GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
Frame-shiftENST00000369137ENST00000378610GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
5CDS-intronENST00000369137ENST00000476517GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
intron-3CDSENST00000369134ENST00000274695GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
intron-3CDSENST00000369134ENST00000378624GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
intron-3CDSENST00000369134ENST00000378610GRIK2chr6

101847268

+CDKAL1chr6

21065279

+
intron-intronENST00000369134ENST00000476517GRIK2chr6

101847268

+CDKAL1chr6

21065279

+

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FusionProtFeatures for GRIK2_CDKAL1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GRIK2

Q13002

CDKAL1

Q5VV42

Catalyzes the methylthiolation of N6-threonylcarbamoyladenosine (t(6)A), leading to the formation of 2-methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position37 in tRNAs that read codons beginning with adenine.{ECO:0000269|PubMed:20584901}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for GRIK2_CDKAL1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for GRIK2_CDKAL1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
GRIK2SDCBP, PICK1, DLG4, GRIP1, GRID2, DLG1, DLG3, GRIK5, GRIA1, GRIA2, CALCOCO1, TRIM25, PARK2CDKAL1ELAVL1, MMS19, LMNA, FAM96B, CIAO1, LCK, SUZ12, TCTN2, TCTN3, EVC2, NEK8, TMEM237, TMEM17, TMEM216, FAF2, TTYH3, BPIFB1, DNM1, TYW3, DNM3, TYW1B


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for GRIK2_CDKAL1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneGRIK2Q13002DB00849MethylphenobarbitalGlutamate receptor ionotropic, kainate 2small moleculeapproved
HgeneGRIK2Q13002DB01354HeptabarbitalGlutamate receptor ionotropic, kainate 2small moleculeapproved
HgeneGRIK2Q13002DB01355HexobarbitalGlutamate receptor ionotropic, kainate 2small moleculeapproved
HgeneGRIK2Q13002DB00306TalbutalGlutamate receptor ionotropic, kainate 2small moleculeapproved|illicit
HgeneGRIK2Q13002DB01351AmobarbitalGlutamate receptor ionotropic, kainate 2small moleculeapproved|illicit
HgeneGRIK2Q13002DB01352AprobarbitalGlutamate receptor ionotropic, kainate 2small moleculeapproved|illicit
HgeneGRIK2Q13002DB01353ButethalGlutamate receptor ionotropic, kainate 2small moleculeapproved|illicit
HgeneGRIK2Q13002DB01174PhenobarbitalGlutamate receptor ionotropic, kainate 2small moleculeapproved|investigational
HgeneGRIK2Q13002DB00312PentobarbitalGlutamate receptor ionotropic, kainate 2small moleculeapproved|investigational|vet_approved
HgeneGRIK2Q13002DB00142Glutamic AcidGlutamate receptor ionotropic, kainate 2small moleculeapproved|nutraceutical
HgeneGRIK2Q13002DB00418SecobarbitalGlutamate receptor ionotropic, kainate 2small moleculeapproved|vet_approved
HgeneGRIK2Q13002DB00599ThiopentalGlutamate receptor ionotropic, kainate 2small moleculeapproved|vet_approved
HgeneGRIK2Q13002DB00794PrimidoneGlutamate receptor ionotropic, kainate 2small moleculeapproved|vet_approved

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RelatedDiseases for GRIK2_CDKAL1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneGRIK2C0005586Bipolar Disorder3CTD_human;PSYGENET
HgeneGRIK2C0004352Autistic Disorder2CTD_human
HgeneGRIK2C0033953Psychosexual Disorders1CTD_human
HgeneGRIK2C0036341Schizophrenia1CTD_human
HgeneGRIK2C0236969Substance-Related Disorders1CTD_human
HgeneGRIK2C0525045Mood Disorders1PSYGENET
TgeneCDKAL1C0011860Diabetes Mellitus, Non-Insulin-Dependent3CTD_human
TgeneCDKAL1C0005910Body Weight2CTD_human
TgeneCDKAL1C0005612Birth Weight1CTD_human