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Fusion gene ID: 14803 |
FusionGeneSummary for GMEB1_TRNAU1AP |
Fusion gene summary |
Fusion gene information | Fusion gene name: GMEB1_TRNAU1AP | Fusion gene ID: 14803 | Hgene | Tgene | Gene symbol | GMEB1 | TRNAU1AP | Gene ID | 10691 | 54952 |
Gene name | glucocorticoid modulatory element binding protein 1 | tRNA selenocysteine 1 associated protein 1 | |
Synonyms | P96PIF|PIF96 | PRO1902|SECP43|TRSPAP1 | |
Cytomap | 1p35.3 | 1p35.3 | |
Type of gene | protein-coding | protein-coding | |
Description | glucocorticoid modulatory element-binding protein 1DNA-binding protein p96PIFPIF p96parvovirus initiation factor p96 | tRNA selenocysteine 1-associated protein 1tRNA selenocysteine associated protein (SECP43)tRNA selenocysteine-associated protein 1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9Y692 | Q9NX07 | |
Ensembl transtripts involved in fusion gene | ENST00000373816, ENST00000361872, ENST00000294409, ENST00000480454, | ENST00000373830, ENST00000495995, | |
Fusion gene scores | * DoF score | 1 X 2 X 2=4 | 5 X 6 X 4=120 |
# samples | 2 | 7 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(7/120*10)=-0.777607578663552 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: GMEB1 [Title/Abstract] AND TRNAU1AP [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-DK-A6B2-01A | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
TCGA | RV | OV | TCGA-24-2023-01A | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000373816 | ENST00000373830 | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
5CDS-3UTR | ENST00000373816 | ENST00000495995 | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
In-frame | ENST00000361872 | ENST00000373830 | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
5CDS-3UTR | ENST00000361872 | ENST00000495995 | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
In-frame | ENST00000294409 | ENST00000373830 | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
5CDS-3UTR | ENST00000294409 | ENST00000495995 | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
3UTR-3CDS | ENST00000480454 | ENST00000373830 | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
3UTR-3UTR | ENST00000480454 | ENST00000495995 | GMEB1 | chr1 | 29019557 | + | TRNAU1AP | chr1 | 28887145 | + |
5UTR-3CDS | ENST00000373816 | ENST00000373830 | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
5UTR-intron | ENST00000373816 | ENST00000495995 | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
5UTR-3CDS | ENST00000361872 | ENST00000373830 | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
5UTR-intron | ENST00000361872 | ENST00000495995 | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
5UTR-3CDS | ENST00000294409 | ENST00000373830 | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
5UTR-intron | ENST00000294409 | ENST00000495995 | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
intron-3CDS | ENST00000480454 | ENST00000373830 | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
intron-intron | ENST00000480454 | ENST00000495995 | GMEB1 | chr1 | 28995351 | + | TRNAU1AP | chr1 | 28897688 | + |
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FusionProtFeatures for GMEB1_TRNAU1AP |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
GMEB1 | TRNAU1AP |
Trans-acting factor that binds to glucocorticoidmodulatory elements (GME) present in the TAT (tyrosineaminotransferase) promoter and increases sensitivity to lowconcentrations of glucocorticoids. Binds also to the transferrinreceptor promoter. Essential auxiliary factor for the replicationof parvoviruses. | Involved in the early steps of selenocysteinebiosynthesis and tRNA(Sec) charging to the later steps resultingin the cotranslational incorporation of selenocysteine intoselenoproteins. Stabilizes the SECISBP2, EEFSEC and tRNA(Sec)complex. May be involved in the methylation of tRNA(Sec). Enhancesefficiency of selenoproteins synthesis (By similarity).{ECO:0000250, ECO:0000269|PubMed:16508009}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >TRNAU1AP | chr1:29019557 | chr1:28887145 | ENST00000373830 | + | 1 | 9 | 185_225 | 41 | 288 | Compositional bias | Note=Tyr-rich |
Tgene | >TRNAU1AP | chr1:29019557 | chr1:28887145 | ENST00000373830 | + | 1 | 9 | 96_175 | 41 | 288 | Domain | RRM 2 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >GMEB1 | chr1:29019557 | chr1:28887145 | ENST00000294409 | + | 5 | 10 | 321_367 | 156 | 574 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GMEB1 | chr1:29019557 | chr1:28887145 | ENST00000361872 | + | 5 | 10 | 321_367 | 146 | 564 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GMEB1 | chr1:29019557 | chr1:28887145 | ENST00000373816 | + | 5 | 10 | 321_367 | 146 | 564 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GMEB1 | chr1:29019557 | chr1:28887145 | ENST00000294409 | + | 5 | 10 | 82_166 | 156 | 574 | Domain | SAND |
Hgene | >GMEB1 | chr1:29019557 | chr1:28887145 | ENST00000361872 | + | 5 | 10 | 82_166 | 146 | 564 | Domain | SAND |
Hgene | >GMEB1 | chr1:29019557 | chr1:28887145 | ENST00000373816 | + | 5 | 10 | 82_166 | 146 | 564 | Domain | SAND |
Tgene | TRNAU1AP | chr1:29019557 | chr1:28887145 | ENST00000373830 | + | 1 | 9 | 3_86 | 41 | 288 | Domain | RRM 1 |
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FusionGeneSequence for GMEB1_TRNAU1AP |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_GMEB1_ENST00000373816_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_393aa MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVETHTIHKIEEGIDTGTIEANEDMEIAYPITCG ESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRIPAGYCFVEFADLATAEKCLHKINGKPLPGATP AKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS KPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANK >In-frame_GMEB1_ENST00000361872_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_393aa MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVETHTIHKIEEGIDTGTIEANEDMEIAYPITCG ESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRIPAGYCFVEFADLATAEKCLHKINGKPLPGATP AKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS KPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANK >In-frame_GMEB1_ENST00000294409_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_403aa MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGLFIDGHFYNRIYEAGSENNTAVVAVETHTIHKIEEGIDTGTIEANED MEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRIPAGYCFVEFADLATAEKCLHKI NGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALT ECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPM |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_GMEB1_ENST00000373816_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_1179nt ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAA ACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATTTATGAAGCTGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACT CACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGG GAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTTGATCAGCCCC AAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAGGATCCCAGCT GGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCT GCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCG GACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTG TCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTCT AAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAG TATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTAT ACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAG GAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCC >In-frame_GMEB1_ENST00000361872_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_1179nt ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAA ACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATTTATGAAGCTGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACT CACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGG GAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTTGATCAGCCCC AAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAGGATCCCAGCT GGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCT GCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCG GACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTG TCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTCT AAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAG TATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTAT ACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAG GAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCC >In-frame_GMEB1_ENST00000294409_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_1209nt ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAA ACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGTTTGTTTATCGATGGACACTTTTACAACAGGATTTATGAAGCTGGGTCGGAG AACAACACGGCAGTTGTAGCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGAT ATGGAAATTGCTTACCCCATAACTTGTGGGGAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGT GTCAAGTTCAATGATCAGTTGATCAGCCCCAAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGT CTGGGTGGGATCATGCTCAGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATT AATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAG TATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGA GGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACG GAGTGCCAGGGAGCAGTGGGACTGGGGTCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATAT AGTCAGATGTACAGTTATAGCTACAACCAGTATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGC TACAGCTACAGTTACCCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATG CCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_GMEB1_ENST00000373816_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_2220nt AAGCCCGGCCTGGCGGCGGCGGTGGCGGTAGCTGCCGTGGCGGCCTCTGCGCATGCTCCGTCGCCTGCCCGCCCTGGCCGCTCGCCGCCC GCCCGCCCGACGGAGACGCAGTCCCAGCTATCTGACTTCATGTGAAAGATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTT GTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAAACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATT TATGAAGCTGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACT ATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGGGAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCA GGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTTGATCAGCCCCAAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGAC TGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAG AAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAA CCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTC TACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAA CAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGT GTAAAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAGTATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTAT GACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGAT GCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATG GACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCCATGATGTAGCCAGGCCAAAGGACAAGCCAGGTTGCATGATGT GAGGGAGATGAGAGACTCCTTTTTAAAAATTGTGAAACCTTTTTGGAAATATGATTTGTAAGATTTTAATAATGACTGTTTTTGGAGATC ATGAATGTTTCTACAACACTGCTGCATTCATTTGACCATTTGAGTTTGAAGACCAAGGGAACAACTTTTAAACAAGGTTCAAATTGGTTT CCTTCACAGGAATCCTTTGTCCAGGTAGTTATCCACATAGGACAGTTTGGGATTATCCAAAACTGGGATGAGCAGCTTGGGATAATTCAC ACACTAAAGCCTGAGTTCAAGGTTTCTCAGTTGACAGGTAGGTATGTAAATCAGGGTTCTCTGGAGTATTTGTAGGACCTGCCATATTTG AGTCCTAACTTGGTGCAAGTCTGGCAGCTAGGTAGAAAAGGCACTCTAGCAGGTGTGGTAGGAGCACGCCCCAGAAGGTAGAATGTGGTG GGGTGTGATGGAACAGGCCAGTTGGCCTAAGAATTAGTACTTGCTCTAATAATGGGTTTCATCTATTTTCATGAGTTGCAGCATCTGCAT ATACAAGGCCTGGATCACTTTAGGATCAATATTTTGACACGGGAGAAGGCAGCTCAGAAAGGATTAAGGAAGATAGCTCAAAGCCAAAGC AGACCCTCCGTGTGAACTTTATACTGCTCACTTCCGTGTTTCCCAAGTAAATGGGGAAACTGTCCAACCTTGTCATGTGTTGGGACTTAC TGCTTGAGGCAAAGCATTCATCCTACATCATAAAAAATCTCCAAAGATCTCTTTAAGGGCTGGGCATGGTGGCTCACTTTGGGAGATGGA >In-frame_GMEB1_ENST00000361872_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_2171nt CTGCGCATGCTCCGTCGCCTGCCCGCCCTGGCCGCTCGCCGCCCGCCCGCCCGACGGAGACGTCCCAGCTATCTGACTTCATGTGAAAGA TGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAAA CCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATTTATGAAGCTGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACTC ACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGGG AGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTTGATCAGCCCCA AGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAGGATCCCAGCTG GCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTG CGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCGG ACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGT CTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTCTA AGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAGT ATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTATA CCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAGG AGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCCA TGATGTAGCCAGGCCAAAGGACAAGCCAGGTTGCATGATGTGAGGGAGATGAGAGACTCCTTTTTAAAAATTGTGAAACCTTTTTGGAAA TATGATTTGTAAGATTTTAATAATGACTGTTTTTGGAGATCATGAATGTTTCTACAACACTGCTGCATTCATTTGACCATTTGAGTTTGA AGACCAAGGGAACAACTTTTAAACAAGGTTCAAATTGGTTTCCTTCACAGGAATCCTTTGTCCAGGTAGTTATCCACATAGGACAGTTTG GGATTATCCAAAACTGGGATGAGCAGCTTGGGATAATTCACACACTAAAGCCTGAGTTCAAGGTTTCTCAGTTGACAGGTAGGTATGTAA ATCAGGGTTCTCTGGAGTATTTGTAGGACCTGCCATATTTGAGTCCTAACTTGGTGCAAGTCTGGCAGCTAGGTAGAAAAGGCACTCTAG CAGGTGTGGTAGGAGCACGCCCCAGAAGGTAGAATGTGGTGGGGTGTGATGGAACAGGCCAGTTGGCCTAAGAATTAGTACTTGCTCTAA TAATGGGTTTCATCTATTTTCATGAGTTGCAGCATCTGCATATACAAGGCCTGGATCACTTTAGGATCAATATTTTGACACGGGAGAAGG CAGCTCAGAAAGGATTAAGGAAGATAGCTCAAAGCCAAAGCAGACCCTCCGTGTGAACTTTATACTGCTCACTTCCGTGTTTCCCAAGTA AATGGGGAAACTGTCCAACCTTGTCATGTGTTGGGACTTACTGCTTGAGGCAAAGCATTCATCCTACATCATAAAAAATCTCCAAAGATC TCTTTAAGGGCTGGGCATGGTGGCTCACTTTGGGAGATGGATTGCTTGAGCTCGGGAAGAGACCAGTTCGGTCTCTACAAAAAAATACAA >In-frame_GMEB1_ENST00000294409_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_2202nt GCGCATGCTCCGTCGCCTGCCCGCCCTGGCCGCTCGCCGCCCGCCCGCCCGACGGAGACGCAGTCCCAGCTATCTGACTTCATGTGAAAG ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAA ACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGTTTGTTTATCGATGGACACTTTTACAACAGGATTTATGAAGCTGGGTCGGAG AACAACACGGCAGTTGTAGCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGAT ATGGAAATTGCTTACCCCATAACTTGTGGGGAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGT GTCAAGTTCAATGATCAGTTGATCAGCCCCAAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGT CTGGGTGGGATCATGCTCAGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATT AATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAG TATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGA GGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACG GAGTGCCAGGGAGCAGTGGGACTGGGGTCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATAT AGTCAGATGTACAGTTATAGCTACAACCAGTATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGC TACAGCTACAGTTACCCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATG CCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCC CTGGACACAGTGTCTTCAGAGATCCCTGCCATGATGTAGCCAGGCCAAAGGACAAGCCAGGTTGCATGATGTGAGGGAGATGAGAGACTC CTTTTTAAAAATTGTGAAACCTTTTTGGAAATATGATTTGTAAGATTTTAATAATGACTGTTTTTGGAGATCATGAATGTTTCTACAACA CTGCTGCATTCATTTGACCATTTGAGTTTGAAGACCAAGGGAACAACTTTTAAACAAGGTTCAAATTGGTTTCCTTCACAGGAATCCTTT GTCCAGGTAGTTATCCACATAGGACAGTTTGGGATTATCCAAAACTGGGATGAGCAGCTTGGGATAATTCACACACTAAAGCCTGAGTTC AAGGTTTCTCAGTTGACAGGTAGGTATGTAAATCAGGGTTCTCTGGAGTATTTGTAGGACCTGCCATATTTGAGTCCTAACTTGGTGCAA GTCTGGCAGCTAGGTAGAAAAGGCACTCTAGCAGGTGTGGTAGGAGCACGCCCCAGAAGGTAGAATGTGGTGGGGTGTGATGGAACAGGC CAGTTGGCCTAAGAATTAGTACTTGCTCTAATAATGGGTTTCATCTATTTTCATGAGTTGCAGCATCTGCATATACAAGGCCTGGATCAC TTTAGGATCAATATTTTGACACGGGAGAAGGCAGCTCAGAAAGGATTAAGGAAGATAGCTCAAAGCCAAAGCAGACCCTCCGTGTGAACT TTATACTGCTCACTTCCGTGTTTCCCAAGTAAATGGGGAAACTGTCCAACCTTGTCATGTGTTGGGACTTACTGCTTGAGGCAAAGCATT CATCCTACATCATAAAAAATCTCCAAAGATCTCTTTAAGGGCTGGGCATGGTGGCTCACTTTGGGAGATGGATTGCTTGAGCTCGGGAAG |
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FusionGenePPI for GMEB1_TRNAU1AP |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GMEB1 | TRIM63, SMAD3, SMAD1, TRIM55, MX1, DNMT3L, FOXL2, GMEB2, CD44, SDC2, MATN4, DHRS2, WDR54, SDC1, MORC1 | TRNAU1AP | CAND1, LMNB2, PRPF39, ZG16B, BRCA1 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GMEB1_TRNAU1AP |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GMEB1_TRNAU1AP |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |