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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDiseases

Fusion gene ID: 14803

FusionGeneSummary for GMEB1_TRNAU1AP

check button Fusion gene summary
Fusion gene informationFusion gene name: GMEB1_TRNAU1AP
Fusion gene ID: 14803
HgeneTgene
Gene symbol

GMEB1

TRNAU1AP

Gene ID

10691

54952

Gene nameglucocorticoid modulatory element binding protein 1tRNA selenocysteine 1 associated protein 1
SynonymsP96PIF|PIF96PRO1902|SECP43|TRSPAP1
Cytomap

1p35.3

1p35.3

Type of geneprotein-codingprotein-coding
Descriptionglucocorticoid modulatory element-binding protein 1DNA-binding protein p96PIFPIF p96parvovirus initiation factor p96tRNA selenocysteine 1-associated protein 1tRNA selenocysteine associated protein (SECP43)tRNA selenocysteine-associated protein 1
Modification date2018052320180519
UniProtAcc

Q9Y692

Q9NX07

Ensembl transtripts involved in fusion geneENST00000373816, ENST00000361872, 
ENST00000294409, ENST00000480454, 
ENST00000373830, ENST00000495995, 
Fusion gene scores* DoF score1 X 2 X 2=45 X 6 X 4=120
# samples 27
** MAII scorelog2(2/4*10)=2.32192809488736log2(7/120*10)=-0.777607578663552
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: GMEB1 [Title/Abstract] AND TRNAU1AP [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBLCATCGA-DK-A6B2-01AGMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
TCGARVOVTCGA-24-2023-01AGMEB1chr1

28995351

+TRNAU1APchr1

28897688

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000373816ENST00000373830GMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
5CDS-3UTRENST00000373816ENST00000495995GMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
In-frameENST00000361872ENST00000373830GMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
5CDS-3UTRENST00000361872ENST00000495995GMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
In-frameENST00000294409ENST00000373830GMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
5CDS-3UTRENST00000294409ENST00000495995GMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
3UTR-3CDSENST00000480454ENST00000373830GMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
3UTR-3UTRENST00000480454ENST00000495995GMEB1chr1

29019557

+TRNAU1APchr1

28887145

+
5UTR-3CDSENST00000373816ENST00000373830GMEB1chr1

28995351

+TRNAU1APchr1

28897688

+
5UTR-intronENST00000373816ENST00000495995GMEB1chr1

28995351

+TRNAU1APchr1

28897688

+
5UTR-3CDSENST00000361872ENST00000373830GMEB1chr1

28995351

+TRNAU1APchr1

28897688

+
5UTR-intronENST00000361872ENST00000495995GMEB1chr1

28995351

+TRNAU1APchr1

28897688

+
5UTR-3CDSENST00000294409ENST00000373830GMEB1chr1

28995351

+TRNAU1APchr1

28897688

+
5UTR-intronENST00000294409ENST00000495995GMEB1chr1

28995351

+TRNAU1APchr1

28897688

+
intron-3CDSENST00000480454ENST00000373830GMEB1chr1

28995351

+TRNAU1APchr1

28897688

+
intron-intronENST00000480454ENST00000495995GMEB1chr1

28995351

+TRNAU1APchr1

28897688

+

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FusionProtFeatures for GMEB1_TRNAU1AP


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GMEB1

Q9Y692

TRNAU1AP

Q9NX07

Trans-acting factor that binds to glucocorticoidmodulatory elements (GME) present in the TAT (tyrosineaminotransferase) promoter and increases sensitivity to lowconcentrations of glucocorticoids. Binds also to the transferrinreceptor promoter. Essential auxiliary factor for the replicationof parvoviruses. Involved in the early steps of selenocysteinebiosynthesis and tRNA(Sec) charging to the later steps resultingin the cotranslational incorporation of selenocysteine intoselenoproteins. Stabilizes the SECISBP2, EEFSEC and tRNA(Sec)complex. May be involved in the methylation of tRNA(Sec). Enhancesefficiency of selenoproteins synthesis (By similarity).{ECO:0000250, ECO:0000269|PubMed:16508009}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneTRNAU1APchr1:29019557chr1:28887145ENST00000373830+19185_22541288Compositional biasNote=Tyr-rich
TgeneTRNAU1APchr1:29019557chr1:28887145ENST00000373830+1996_17541288DomainRRM 2

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneGMEB1chr1:29019557chr1:28887145ENST00000294409+510321_367156574Coiled coilOntology_term=ECO:0000255
HgeneGMEB1chr1:29019557chr1:28887145ENST00000361872+510321_367146564Coiled coilOntology_term=ECO:0000255
HgeneGMEB1chr1:29019557chr1:28887145ENST00000373816+510321_367146564Coiled coilOntology_term=ECO:0000255
HgeneGMEB1chr1:29019557chr1:28887145ENST00000294409+51082_166156574DomainSAND
HgeneGMEB1chr1:29019557chr1:28887145ENST00000361872+51082_166146564DomainSAND
HgeneGMEB1chr1:29019557chr1:28887145ENST00000373816+51082_166146564DomainSAND
TgeneTRNAU1APchr1:29019557chr1:28887145ENST00000373830+193_8641288DomainRRM 1


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FusionGeneSequence for GMEB1_TRNAU1AP


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_GMEB1_ENST00000373816_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_393aa
MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVETHTIHKIEEGIDTGTIEANEDMEIAYPITCG
ESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRIPAGYCFVEFADLATAEKCLHKINGKPLPGATP
AKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS
KPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANK

>In-frame_GMEB1_ENST00000361872_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_393aa
MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVETHTIHKIEEGIDTGTIEANEDMEIAYPITCG
ESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRIPAGYCFVEFADLATAEKCLHKINGKPLPGATP
AKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS
KPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANK

>In-frame_GMEB1_ENST00000294409_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_403aa
MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGLFIDGHFYNRIYEAGSENNTAVVAVETHTIHKIEEGIDTGTIEANED
MEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRIPAGYCFVEFADLATAEKCLHKI
NGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALT
ECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPM


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_GMEB1_ENST00000373816_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_1179nt
ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAA
ACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATTTATGAAGCTGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACT
CACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGG
GAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTTGATCAGCCCC
AAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAGGATCCCAGCT
GGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCT
GCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCG
GACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTG
TCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTCT
AAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAG
TATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTAT
ACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAG
GAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCC

>In-frame_GMEB1_ENST00000361872_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_1179nt
ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAA
ACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATTTATGAAGCTGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACT
CACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGG
GAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTTGATCAGCCCC
AAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAGGATCCCAGCT
GGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCT
GCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCG
GACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTG
TCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTCT
AAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAG
TATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTAT
ACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAG
GAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCC

>In-frame_GMEB1_ENST00000294409_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_1209nt
ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAA
ACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGTTTGTTTATCGATGGACACTTTTACAACAGGATTTATGAAGCTGGGTCGGAG
AACAACACGGCAGTTGTAGCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGAT
ATGGAAATTGCTTACCCCATAACTTGTGGGGAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGT
GTCAAGTTCAATGATCAGTTGATCAGCCCCAAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGT
CTGGGTGGGATCATGCTCAGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATT
AATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAG
TATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGA
GGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACG
GAGTGCCAGGGAGCAGTGGGACTGGGGTCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATAT
AGTCAGATGTACAGTTATAGCTACAACCAGTATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGC
TACAGCTACAGTTACCCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATG
CCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCC


* Fusion transcript sequences (Full-length transcript).
>In-frame_GMEB1_ENST00000373816_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_2220nt
AAGCCCGGCCTGGCGGCGGCGGTGGCGGTAGCTGCCGTGGCGGCCTCTGCGCATGCTCCGTCGCCTGCCCGCCCTGGCCGCTCGCCGCCC
GCCCGCCCGACGGAGACGCAGTCCCAGCTATCTGACTTCATGTGAAAGATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTT
GTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAAACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATT
TATGAAGCTGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACT
ATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGGGAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCA
GGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTTGATCAGCCCCAAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGAC
TGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAG
AAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAA
CCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTC
TACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAA
CAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGT
GTAAAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAGTATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTAT
GACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGAT
GCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATG
GACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCCATGATGTAGCCAGGCCAAAGGACAAGCCAGGTTGCATGATGT
GAGGGAGATGAGAGACTCCTTTTTAAAAATTGTGAAACCTTTTTGGAAATATGATTTGTAAGATTTTAATAATGACTGTTTTTGGAGATC
ATGAATGTTTCTACAACACTGCTGCATTCATTTGACCATTTGAGTTTGAAGACCAAGGGAACAACTTTTAAACAAGGTTCAAATTGGTTT
CCTTCACAGGAATCCTTTGTCCAGGTAGTTATCCACATAGGACAGTTTGGGATTATCCAAAACTGGGATGAGCAGCTTGGGATAATTCAC
ACACTAAAGCCTGAGTTCAAGGTTTCTCAGTTGACAGGTAGGTATGTAAATCAGGGTTCTCTGGAGTATTTGTAGGACCTGCCATATTTG
AGTCCTAACTTGGTGCAAGTCTGGCAGCTAGGTAGAAAAGGCACTCTAGCAGGTGTGGTAGGAGCACGCCCCAGAAGGTAGAATGTGGTG
GGGTGTGATGGAACAGGCCAGTTGGCCTAAGAATTAGTACTTGCTCTAATAATGGGTTTCATCTATTTTCATGAGTTGCAGCATCTGCAT
ATACAAGGCCTGGATCACTTTAGGATCAATATTTTGACACGGGAGAAGGCAGCTCAGAAAGGATTAAGGAAGATAGCTCAAAGCCAAAGC
AGACCCTCCGTGTGAACTTTATACTGCTCACTTCCGTGTTTCCCAAGTAAATGGGGAAACTGTCCAACCTTGTCATGTGTTGGGACTTAC
TGCTTGAGGCAAAGCATTCATCCTACATCATAAAAAATCTCCAAAGATCTCTTTAAGGGCTGGGCATGGTGGCTCACTTTGGGAGATGGA

>In-frame_GMEB1_ENST00000361872_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_2171nt
CTGCGCATGCTCCGTCGCCTGCCCGCCCTGGCCGCTCGCCGCCCGCCCGCCCGACGGAGACGTCCCAGCTATCTGACTTCATGTGAAAGA
TGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAAA
CCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGGATTTATGAAGCTGGGTCGGAGAACAACACGGCAGTTGTAGCAGTAGAAACTC
ACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGATATGGAAATTGCTTACCCCATAACTTGTGGGG
AGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGTGTCAAGTTCAATGATCAGTTGATCAGCCCCA
AGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGTCTGGGTGGGATCATGCTCAGGATCCCAGCTG
GCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTG
CGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCGG
ACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGT
CTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTCTA
AGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAGT
ATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTATA
CCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAGG
AGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCTTCAGAGATCCCTGCCA
TGATGTAGCCAGGCCAAAGGACAAGCCAGGTTGCATGATGTGAGGGAGATGAGAGACTCCTTTTTAAAAATTGTGAAACCTTTTTGGAAA
TATGATTTGTAAGATTTTAATAATGACTGTTTTTGGAGATCATGAATGTTTCTACAACACTGCTGCATTCATTTGACCATTTGAGTTTGA
AGACCAAGGGAACAACTTTTAAACAAGGTTCAAATTGGTTTCCTTCACAGGAATCCTTTGTCCAGGTAGTTATCCACATAGGACAGTTTG
GGATTATCCAAAACTGGGATGAGCAGCTTGGGATAATTCACACACTAAAGCCTGAGTTCAAGGTTTCTCAGTTGACAGGTAGGTATGTAA
ATCAGGGTTCTCTGGAGTATTTGTAGGACCTGCCATATTTGAGTCCTAACTTGGTGCAAGTCTGGCAGCTAGGTAGAAAAGGCACTCTAG
CAGGTGTGGTAGGAGCACGCCCCAGAAGGTAGAATGTGGTGGGGTGTGATGGAACAGGCCAGTTGGCCTAAGAATTAGTACTTGCTCTAA
TAATGGGTTTCATCTATTTTCATGAGTTGCAGCATCTGCATATACAAGGCCTGGATCACTTTAGGATCAATATTTTGACACGGGAGAAGG
CAGCTCAGAAAGGATTAAGGAAGATAGCTCAAAGCCAAAGCAGACCCTCCGTGTGAACTTTATACTGCTCACTTCCGTGTTTCCCAAGTA
AATGGGGAAACTGTCCAACCTTGTCATGTGTTGGGACTTACTGCTTGAGGCAAAGCATTCATCCTACATCATAAAAAATCTCCAAAGATC
TCTTTAAGGGCTGGGCATGGTGGCTCACTTTGGGAGATGGATTGCTTGAGCTCGGGAAGAGACCAGTTCGGTCTCTACAAAAAAATACAA

>In-frame_GMEB1_ENST00000294409_chr1_29019557_+_TRNAU1AP_ENST00000373830_chr1_28887145_+_2202nt
GCGCATGCTCCGTCGCCTGCCCGCCCTGGCCGCTCGCCGCCCGCCCGCCCGACGGAGACGCAGTCCCAGCTATCTGACTTCATGTGAAAG
ATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAA
ACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGGTTTGTTTATCGATGGACACTTTTACAACAGGATTTATGAAGCTGGGTCGGAG
AACAACACGGCAGTTGTAGCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGATTGATACAGGCACTATAGAAGCAAATGAGGAT
ATGGAAATTGCTTACCCCATAACTTGTGGGGAGAGCAAAGCCATCCTCCTCTGGAAGAAGTTTGTATGTCCAGGAATAAACGTGAAGTGT
GTCAAGTTCAATGATCAGTTGATCAGCCCCAAGCACTTTGTTCATCTGGCTGGCAAGTCCACTCTGAAGGACTGGAAGAGAGCTATTCGT
CTGGGTGGGATCATGCTCAGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATT
AATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAG
TATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTACCCCTCCTGTCGGGGA
GGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACG
GAGTGCCAGGGAGCAGTGGGACTGGGGTCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATAT
AGTCAGATGTACAGTTATAGCTACAACCAGTATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGC
TACAGCTACAGTTACCCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGACCCCATG
CCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCC
CTGGACACAGTGTCTTCAGAGATCCCTGCCATGATGTAGCCAGGCCAAAGGACAAGCCAGGTTGCATGATGTGAGGGAGATGAGAGACTC
CTTTTTAAAAATTGTGAAACCTTTTTGGAAATATGATTTGTAAGATTTTAATAATGACTGTTTTTGGAGATCATGAATGTTTCTACAACA
CTGCTGCATTCATTTGACCATTTGAGTTTGAAGACCAAGGGAACAACTTTTAAACAAGGTTCAAATTGGTTTCCTTCACAGGAATCCTTT
GTCCAGGTAGTTATCCACATAGGACAGTTTGGGATTATCCAAAACTGGGATGAGCAGCTTGGGATAATTCACACACTAAAGCCTGAGTTC
AAGGTTTCTCAGTTGACAGGTAGGTATGTAAATCAGGGTTCTCTGGAGTATTTGTAGGACCTGCCATATTTGAGTCCTAACTTGGTGCAA
GTCTGGCAGCTAGGTAGAAAAGGCACTCTAGCAGGTGTGGTAGGAGCACGCCCCAGAAGGTAGAATGTGGTGGGGTGTGATGGAACAGGC
CAGTTGGCCTAAGAATTAGTACTTGCTCTAATAATGGGTTTCATCTATTTTCATGAGTTGCAGCATCTGCATATACAAGGCCTGGATCAC
TTTAGGATCAATATTTTGACACGGGAGAAGGCAGCTCAGAAAGGATTAAGGAAGATAGCTCAAAGCCAAAGCAGACCCTCCGTGTGAACT
TTATACTGCTCACTTCCGTGTTTCCCAAGTAAATGGGGAAACTGTCCAACCTTGTCATGTGTTGGGACTTACTGCTTGAGGCAAAGCATT
CATCCTACATCATAAAAAATCTCCAAAGATCTCTTTAAGGGCTGGGCATGGTGGCTCACTTTGGGAGATGGATTGCTTGAGCTCGGGAAG


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FusionGenePPI for GMEB1_TRNAU1AP


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
GMEB1TRIM63, SMAD3, SMAD1, TRIM55, MX1, DNMT3L, FOXL2, GMEB2, CD44, SDC2, MATN4, DHRS2, WDR54, SDC1, MORC1TRNAU1APCAND1, LMNB2, PRPF39, ZG16B, BRCA1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for GMEB1_TRNAU1AP


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for GMEB1_TRNAU1AP


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource