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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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Fusion gene ID: 14600

FusionGeneSummary for GGNBP2_NEBL

check button Fusion gene summary
Fusion gene informationFusion gene name: GGNBP2_NEBL
Fusion gene ID: 14600
HgeneTgene
Gene symbol

GGNBP2

NEBL

Gene ID

79893

10529

Gene namegametogenetin binding protein 2nebulette
SynonymsDIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403LASP2|LNEBL
Cytomap

17q12

10p12.31

Type of geneprotein-codingprotein-coding
Descriptiongametogenetin-binding protein 2C3HC4-type zinc finger proteinlaryngeal carcinoma related gene 1laryngeal carcinoma-related protein 1zinc finger protein 403nebuletteLIM and SH3 protein 2LIM-nebuletteactin-binding Z-disk protein
Modification date2018052320180523
UniProtAcc

Q9H3C7

O76041

Ensembl transtripts involved in fusion geneENST00000304718, ENST00000485685, 
ENST00000377122, ENST00000417816, 
ENST00000377159, ENST00000377119, 
ENST00000464278, 
Fusion gene scores* DoF score5 X 5 X 5=1255 X 4 X 4=80
# samples 55
** MAII scorelog2(5/125*10)=-1.32192809488736
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/80*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: GGNBP2 [Title/Abstract] AND NEBL [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationTumor suppressor gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVCESCTCGA-C5-A3HD-01BGGNBP2chr17

34901666

+NEBLchr10

21101869

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000304718ENST00000377122GGNBP2chr17

34901666

+NEBLchr10

21101869

-
In-frameENST00000304718ENST00000417816GGNBP2chr17

34901666

+NEBLchr10

21101869

-
In-frameENST00000304718ENST00000377159GGNBP2chr17

34901666

+NEBLchr10

21101869

-
5CDS-intronENST00000304718ENST00000377119GGNBP2chr17

34901666

+NEBLchr10

21101869

-
5CDS-intronENST00000304718ENST00000464278GGNBP2chr17

34901666

+NEBLchr10

21101869

-
Frame-shiftENST00000485685ENST00000377122GGNBP2chr17

34901666

+NEBLchr10

21101869

-
Frame-shiftENST00000485685ENST00000417816GGNBP2chr17

34901666

+NEBLchr10

21101869

-
Frame-shiftENST00000485685ENST00000377159GGNBP2chr17

34901666

+NEBLchr10

21101869

-
5CDS-intronENST00000485685ENST00000377119GGNBP2chr17

34901666

+NEBLchr10

21101869

-
5CDS-intronENST00000485685ENST00000464278GGNBP2chr17

34901666

+NEBLchr10

21101869

-

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FusionProtFeatures for GGNBP2_NEBL


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GGNBP2

Q9H3C7

NEBL

O76041

May be involved in spermatogenesis. Binds to actin and plays an important role in theassembly of the Z-disk. May functionally link sarcomeric actin tothe desmin intermediate filaments in the heart muscle sarcomeres(PubMed:27733623). Isoform 2 might play a role in the assembly offocal adhesion (PubMed:15004028). {ECO:0000269|PubMed:15004028,ECO:0000269|PubMed:27733623}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>>>>>>>>>>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228954_10147821015DomainSH3
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37954_1014119271DomainSH3
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228836_9537821015RegionNote=Linker
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37836_953119271RegionNote=Linker
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228795_8307821015RepeatNote=Nebulin 23
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37137_172119271RepeatNote=Nebulin 4
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37173_205119271RepeatNote=Nebulin 5
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37206_241119271RepeatNote=Nebulin 6
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37242_278119271RepeatNote=Nebulin 7
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37279_313119271RepeatNote=Nebulin 8
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37314_348119271RepeatNote=Nebulin 9
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37349_385119271RepeatNote=Nebulin 10
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37386_422119271RepeatNote=Nebulin 11
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37423_459119271RepeatNote=Nebulin 12
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37460_496119271RepeatNote=Nebulin 13
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37497_533119271RepeatNote=Nebulin 14
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37534_569119271RepeatNote=Nebulin 15
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37570_599119271RepeatNote=Nebulin 16
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37600_635119271RepeatNote=Nebulin 17
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37636_666119271RepeatNote=Nebulin 18
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37667_693119271RepeatNote=Nebulin 19
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37694_728119271RepeatNote=Nebulin 20
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37729_759119271RepeatNote=Nebulin 21
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37760_794119271RepeatNote=Nebulin 22
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37795_830119271RepeatNote=Nebulin 23

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228100_1367821015RepeatNote=Nebulin 3
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228137_1727821015RepeatNote=Nebulin 4
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228173_2057821015RepeatNote=Nebulin 5
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228206_2417821015RepeatNote=Nebulin 6
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228242_2787821015RepeatNote=Nebulin 7
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228279_3137821015RepeatNote=Nebulin 8
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-222829_637821015RepeatNote=Nebulin 1
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228314_3487821015RepeatNote=Nebulin 9
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228349_3857821015RepeatNote=Nebulin 10
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228386_4227821015RepeatNote=Nebulin 11
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228423_4597821015RepeatNote=Nebulin 12
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228460_4967821015RepeatNote=Nebulin 13
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228497_5337821015RepeatNote=Nebulin 14
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228534_5697821015RepeatNote=Nebulin 15
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228570_5997821015RepeatNote=Nebulin 16
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228600_6357821015RepeatNote=Nebulin 17
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228636_6667821015RepeatNote=Nebulin 18
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-222864_997821015RepeatNote=Nebulin 2
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228667_6937821015RepeatNote=Nebulin 19
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228694_7287821015RepeatNote=Nebulin 20
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228729_7597821015RepeatNote=Nebulin 21
TgeneNEBLchr17:34901666chr10:21101869ENST00000377122-2228760_7947821015RepeatNote=Nebulin 22
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-37100_136119271RepeatNote=Nebulin 3
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-3729_63119271RepeatNote=Nebulin 1
TgeneNEBLchr17:34901666chr10:21101869ENST00000417816-3764_99119271RepeatNote=Nebulin 2


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FusionGeneSequence for GGNBP2_NEBL


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000377122_chr10_21101869_-_264aa
MARLVAVCRDGEEEFPFERRQIPLYIDDTLTVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDL
KVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQS

>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000417816_chr10_21101869_-_183aa
MARLVAVCRDGEEEFPFERRQIPLYIDDTLTVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAP
VLPGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF

>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000377159_chr10_21101869_-_183aa
MARLVAVCRDGEEEFPFERRQIPLYIDDTLTVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAP
VLPGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000377122_chr10_21101869_-_792nt
ATGGCGCGACTCGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATTCCCCTCTACATAGACGACACCCTG
ACGGTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGGCTTTACTCCCGTCGTGGACGATCCTGTGACAGAGAGAGTGAGGAAG
AACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTGACCTC
AAAGTTTGGCGCACAGATCCTGGCTCCATCTTCGACCTTGATCCCCTGGAAGACAATATTCAGTCTAGAAGTCTCCATATGCTCTCTGAA
AAGGCGAGTCACTATAGGCGACACTGGTCTCGATCCCATTCCAGCAGTACTTTCGGTACAGGTCTCGGAGACGACAGGTCAGAAATCTCC
GAGATTTACCCTAGCTTTTCATGCTGCAGTGAGGTAACAAGACCGTCTGATGAAGGAGCACCTGTTCTTCCCGGAGCCTATCAGCAAAGC
CATTCCCAAGGCTATGGCTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCATTCACCAAATCTAAGGACCTACCGAGCC
ATGTACGATTACAGTGCCCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACTACATCGTCAACGTGCAGCCTATTGACGATGGCTGG

>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000417816_chr10_21101869_-_549nt
ATGGCGCGACTCGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATTCCCCTCTACATAGACGACACCCTG
ACGGTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGGCTTTACTCCCGTCGTGGACGATCCTGTGACAGAGAGAGTGAGGAAG
AACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTGCACCT
GTTCTTCCCGGAGCCTATCAGCAAAGCCATTCCCAAGGCTATGGCTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCAT
TCACCAAATCTAAGGACCTACCGAGCCATGTACGATTACAGTGCCCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACTACATCGTC
AACGTGCAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCAGAGAACAGGGAGAACAGGAATGCTCCCAGCGAATTACATTGAGTTT

>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000377159_chr10_21101869_-_549nt
ATGGCGCGACTCGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATTCCCCTCTACATAGACGACACCCTG
ACGGTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGGCTTTACTCCCGTCGTGGACGATCCTGTGACAGAGAGAGTGAGGAAG
AACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTGCACCT
GTTCTTCCCGGAGCCTATCAGCAAAGCCATTCCCAAGGCTATGGCTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCAT
TCACCAAATCTAAGGACCTACCGAGCCATGTACGATTACAGTGCCCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACTACATCGTC
AACGTGCAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCAGAGAACAGGGAGAACAGGAATGCTCCCAGCGAATTACATTGAGTTT


* Fusion transcript sequences (Full-length transcript).
>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000377122_chr10_21101869_-_6882nt
ACCTTCCCCTCGTCCCCCGCCCTCCTTCTTCCACTCCCCGCGGCGCGAGCGGCTGACTGCCCGTAGAGGAAACGACATTCGGAGCTGCGC
TCCCGCCCAGGCCGGCCCTGACGCGGGCCTCGTCAGCCAGTAACAGGGAGCAGAGGTGGGAGTTAGCGAGGCGACCACGAAAACGGTGAA
GGTCGGAACCGACAGCCTCCTCCGAGAAGGGCAGGAGCTGGGAGGAGGCGGCAGCGGCGGCGGCAGAAACAGCAGCGGCGGCGGCGGCGG
CAGCTGGGAGGAGGTGGTGACGGTGGCAACGGCAGCGTCGGGGACGATGGCGCGACTCGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTT
CCCCTTCGAGAGGAGGCAGATTCCCCTCTACATAGACGACACCCTGACGGTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGG
CTTTACTCCCGTCGTGGACGATCCTGTGACAGAGAGAGTGAGGAAGAACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCC
TCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTGACCTCAAAGTTTGGCGCACAGATCCTGGCTCCATCTTCGACCTTGATCC
CCTGGAAGACAATATTCAGTCTAGAAGTCTCCATATGCTCTCTGAAAAGGCGAGTCACTATAGGCGACACTGGTCTCGATCCCATTCCAG
CAGTACTTTCGGTACAGGTCTCGGAGACGACAGGTCAGAAATCTCCGAGATTTACCCTAGCTTTTCATGCTGCAGTGAGGTAACAAGACC
GTCTGATGAAGGAGCACCTGTTCTTCCCGGAGCCTATCAGCAAAGCCATTCCCAAGGCTATGGCTACATGCACCAGACCAGTGTGTCATC
CATGAGATCAATGCAGCATTCACCAAATCTAAGGACCTACCGAGCCATGTACGATTACAGTGCCCAGGATGAAGACGAGGTCTCCTTTAG
AGACGGCGACTACATCGTCAACGTGCAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCAGAGAACAGGGAGAACAGGAATGCTCCC
AGCGAATTACATTGAGTTTGTTAATTAATTATTTCTCCCTGCCCTTTGAGCTTTATTCTAATGTATCCCAAACCTAATCTTTTTAAAAGA
TAGAAGATACTTTTAAGACAACTTGGCCATTATTTTACAATGATGTATCCTTCCTTTGACAATTAGACACACAGGTACCAGGAAGAAGGA
ATGACCTCTGGGCTGAAAACAGCAGCATTTTCAGTAATTCCTACAAACAAAAATCTTTGTGTCTGGACACCTGGTGCTGCTAATTGTGTT
CATGGTTTCCTTTGATTGGCTATTGAACCCTTCTGGGAAATGTATTTTTGTAGACTTTAATAGAGAAGTTGATTGTCCCTTAAATGTAGT
GTGTGTTTGAAACTTCTTAGCTGTCACTTTGGAATCACCCCAAGCCAATTCTCTTAACTCTGTAATGCAGCCAATAATTTCAAACCCGTT
TTGCTTTTGAGTCATGAGGCAATTTCCAATATTAGTGAAAATTGCCCAATATAATAAGTGTAAACAGTGGCAGAAGGACAGTCTGGTTAA
AATTATATTGACTGGTGGCCTTAGGGATCTAGAAACTTCTACTAAACAGAGAAATTTCCTTGTTCCCTAGGCTGACTGGTATCTATTTAT
TTCTCATTTGTACCAAGGCATCTCCTACTCTCCATTTATATTCTATGGACCCAAGTCTATGCTCAGTTCCACAGAATGTCAGGACCAAAT
AACTTCACAGCTACTCTGCAAAGGGCAAATTATAATGTCATTGATATAATTTCCCTAGTAGCATTTACCCTGTTGCATGTCATGTAGATT
CAAGCTTCTGTAACATAGGCAGCTGCACTGCGCGTTCCTATTATTGAAGCAAAAAGGGTGACTGATACCTAAAAGCCCTTTCTTCCTCTA
GTCGCCAGCTCATCAGAAAAACATACTTTGAAAAGATGCTTGAGATTTTCCTGCTGCATCGCACTCTAGTTTTGAAGGATTTACATCTTA
GGAAATAACATGTATACTCTAGTAAATAAGCGATTTAGGTGTTCCATTGAACAGCTTTGATTAACTTAATGCCACCATTGATTTCAAAGT
GAAGAAAATGTAACAGAAGCCAGTGAAGCAATGGAAGCTGGAGTGTGACTGGAAAAATACTCAGCAAACAAAGTTACCAATTCCATACAG
AGATGATCTGGTATCTTCTTTTGGAAAATGGTATTCAAATTCTGGAATGGAAATCTAGCCACCAAAACGGGTTAATCAAAAGACGTCCTT
TTCCATTTTTTTTTGCTTTTATTTTCTAAATCATTTTTAAGGGAATGAAACAGGAATGTCATCAGAGATTTTTTAGTACAGGCCCAAGAG
CCTGTTCTCTAAGAAAGAAATTGTTGCCATGTTTTGATTTTCGAATAAGTGACTTTGCAGGCTTTATGCTAGCCCTTGCTGGTGGGTCTT
GAAATTTCATCCAGAGTCTGCAGTCCAGGTCACCAAGCCAGCGGCACCCGTCGGCAACCCTGTGTTTTTCTGATTGTGCCGTTTACTGTG
ACCTGCAACGGGGTGGCATTCACTTAGGGTCTGACTTCACAGCTATGACAAAACCGAAAAAGCAAAACTGCAAAAAAGTACTAAGATGTA
CGGGTCTTGGGGATATCTGCCTTATATGTTATATTCAAGGAAATTAACAAAACATCCTGTAAAACATCGTTTAAGGAAACGTTTACTAGT
CCAAAGGCCAAAGCTAATTTATTTCCACTTTAGAAAAGTTAGCACATGCTTTTGAAAATCTGTGATTTCATTTTATTAGGCTAAAAGGGT
AAATAGGCTTTATTACACTGAAGCTGCATCTATATGTCACTGACATAAAGTTGAAAAAATAAATGCAGGCAAATAACTAGAGACTTCTTT
TAAGGGGGTTTGGCTGGTTTTCTCTCACTGAAATGGCCAGTCGTGATTAAAGTGATAAAACCCCATATCTGTTTTGGTATATTGTACACA
AACCTACAAAAATAAACTGAACTTGCAATATTTTTGCAAAAAAATCTGTCGTTAAAACTGAGGATAAAATACCTGCTCAATTTTATTTTA
CTAAGTATATATTTACATTTCACCCAGGCAGGCCATTTTCTTTTGTGATTATAAGAAAGAGTAGTTGTTGATTAAATTTTCAGACTAAAT
ATAGGACAGGTACAATTTTGGATAAATAGCACATTTATAAGAACCGCAATGAAAACTGACTTGAAATAATGCTTGTAATCAGGAAAGTAA
TTTCATCCACCGATTTCAAAACCAGATTCACTGAGCATAAAAGTCAATACATATTTGAGGAATAAGTCTCCTAAAATTTTAAGCTTCACG
TAATAATGTTTGCATAGCAAAATATTTCTGCTTCAAGCCTTTAGGAATTAAGATCTGATCAGAATTTAACTAAAGGGTAGTTGTTTTACA
ATGAAGACTAAAACTGAACAAGATGTTGCATGCTCTTGAGGCCATAATTTGGTAGTGTTGGCAGTTGTTAATAAAGCTTGTCAGGATGTT
AAGCATCTCAGGAGAAATATTGGAAAATTATATGTATAAAACCAAAGTGCTATTTTTAAAAGCATCATTTAAAAAAAAATGACATGCCTG
AACAACTTTTCCACTTTCCACGTGCTTCCCTCCCACCTTTGGTTTGGCAACAGGTATCTCGTGCATGAAGCTGACAGCTAAAGAAGATTT
TAAAAATTGAGTTAAAGATGACTGTGTAAATGTCCAAGCACAGAGAGCATGCACCTGACTTTCTAAAGTTTGATGTGTTCTCAAGCCTGA
CAGAAGCACAAGGAACAGTTTGATACACTTTTAAAAGGTTCTGAAAACAAAGCTGTATAGGGATCCTCTCTCTCTTGAGCAAAGTATAGC
AACAGAATATATTGCTTTTGTTGTAAGCTTTTGTAGTACATGTTTTTACTAATAATTCTTGTTCTCTAGAAAGCTTTCTATTTCTAACCT
ATGGCAAAATGAATCCTTCATGTCTTCTTGTTATTGTTTACACACTTGCAGTGTAGCCCAGTTTGAAATATTTATTTGGTTATCAACTGC
CCATGGAGGAGGCTCTTGATGATCCCAGGTCTCCTCGACCTCCATACACCACACAGGCATTTGTAAGCACAGTTTCCACAAGCACCTTGT
AGGAATATGGATAAGATTAGACCAGCCCCTCTCTGTCCACTGGGTTTATTTCTTGAAGAAGATGCAGATCTGGTTTTTCCAATGTGCCAC
AGTCTTTCCTTATCCTCTCCATGCTGAGCTTGACAACACTCTGGGAATGAGGAACAAGACTTTTTCTAAAAAGATAGTGGAAGTTCAAGG
GATGTACCTCGTTTTCAGGTTCATCCATCTCCAGTGGAATGTTTTCAATAAAAGATGAAGAAAATGTGTGTGATCTTTAATAACACATCC
CTATAGAAAGTGGATAAAAGATATACCAAAACTGTAATACAGATATATACAAATATAGGTGCCTTTTTGATTACTCTTGTTTGTCTAGTA
TGCTCTTGGAAAGAAAACCAAGCAAGCAAGTTGCTGCCTATTCTATAGTAATATTTTATTACACATGATTGATATTTTTGTGGTAGGGAA
GTGGGATGCTCCTCAGATATTAAAGGTGTTAGCTGATTGTATTTTATCTCTAAAGATTTAGAACTTTAGAAAATGCCGACTTCTTCCATC
TATTTCTGAAAGGTTCTTTGTGGATTTATATAGAGTTGAGCTATATAAACATTAACTTTAGATTTGGGATTTAAAATGCCTATTGTAAGA
TAGAATAATTGTGAGGCTGGATTCACTACACAAGATGAACTTCACTTCATAAATTAATTATACCTTAGCGATTTGCTTCTGATAATCTAA
AAGTGGCTAGATTGTGGTTGTTTTGGTTAAGGTGATATGGAGGTGGGAGAGCTTTTAGTTAAGTAAGAAGCTATGTAAACTGACAAGGAT
GCTAAAATAAAAGTCTCTGAAGTATTCCATGCCTTTTGGACCCTTTCCTCGCAACTAACTGTCAACTGTTGATCAAAAAAGTCAAGGCAT
TGTATGTTGCTTCTGTGGTTATTATTCTGTGATGCTTAGACTACTTGAACCCATAAACTTGGAAGAATCTTTGAGCAAATTTTCTCAGTT
GTCTGTATGACTTCAGTATATTCCTGGGAATGCCATAGGATTTTTTGTGCTTGATACATGGTATCCAGTTTGCATAGTATCACTTCTTTG
TAATCCAGTTGCTGTTAAGAATGATGTACTTTAAAGGAAAAGAGAAAACTGCATCACAGTCCCATTCTCCAGTGTCCATGCAATGAATTG
CTGAGCATTTAGGAAGCAGCACCAAGTCTATTACAGGCATGGTGTGAAACTTGATGTTTGACCTGTGATCAAAATTGAACCATTGTACAG
TTTGGCTTCTGTTTGCTTCAAAATATGTAGAATTGTGGTTGATGATTAATTTGCGAGACTAACTTTGAGAGTGTAACAGTTTTGAAGAAA
ACATTGAATGTTTTGCAAATGAAGGGGCTTCACGGAATGTTACAATGTTACTAATATAATTTGGCTTTTGTTATGCAAATTGTTAACACC
AGCTATTAAAATATATTTTAGTAGAAATGCTTTAATTCATATTTTTTTCCTCTACACTGTGAATCTTTAAGCCTTGGTGGACTAGAGCAA
CATCGTGCTGCCCAAAGGACTAACCTATGCAAACTAGTTCACATTTTAGTGGATGTCGCAGTTAATGTGTAATAAGACATTATTTCCCCT
GCATAATGTACAACAGCATTGAAATGACACATTAAGCCTAGCATCACATTGTATAGTACAGTCACTCACAAACCCTTCAAGGCTACCCTA
ATCATTAACATTAATATTTGTTTAAAAGCAAATCACCGATTTATCTATTGAAACTACTTAAATGACGGCAAACCAGGAATGACAGATGGC
TGTGTCAGCAATGGCTTTAATGTGTTCCCTGCAAGTGGTCTCCTATGATAGAACTGCGTTCTCAAATGCACTCTCTTCAGGGTCTTAATA
TTCTGTGTTTTCTCTCTGTATTTGTAAAACATTATAACACATTAATTTCCTATCTCTACACATTTGGTTTGCTTAAATAAATGCAGGATA
TAAAAAAAATGGTTCACTTCTTGGCTCTCACCGTGGTTTCTTGGAGCATGGGTTGTTAGATGCAAGCAATGCACCCTAATAATACCCCGG
GTCTGAGATTTAACATGACAACTCACATCAAATCGCATCAGAGGTGTGTGCTGCCTTCAGTGCATTTACATTGGTGAATCAGTCAAGATA
TTTTCCTCCCCCAAATAAACTTAGTTGTAAGTGATAACAATATTATGCTTCTCCAAGCTCAGTATCTTTCTGATTTTATATCAAAGTACC
GCAACAATGCATCATTGTAGTTAATTTATTTCAAGAATAAATTCCTCATATGTCCTCAATAGTACAATTCTAATTTTCTTCTATTCATAA
GATGAAAGAAATGGTTTGGAGCATAGAATAGAAAGTGCACAAATTGAGTACATAAAATGGGAAGCAACTGATTTCTCAGCTAAGAAAGGC
TCATTTATCACAGAACACAATTGCTTTTCTCCCCCCACTACGCTTCCCATAATTGAAAAAGTGAGTCCCTATTTTTCACACTCATATAAA
TCTATGCGATTTGGATGCTAGTCTTATTGTATTATTTTGTAAAACTTTCTCTTTGGCTCATAATCCTTCCTAATTGTAAATTGATAAACT

>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000417816_chr10_21101869_-_2706nt
ACCTTCCCCTCGTCCCCCGCCCTCCTTCTTCCACTCCCCGCGGCGCGAGCGGCTGACTGCCCGTAGAGGAAACGACATTCGGAGCTGCGC
TCCCGCCCAGGCCGGCCCTGACGCGGGCCTCGTCAGCCAGTAACAGGGAGCAGAGGTGGGAGTTAGCGAGGCGACCACGAAAACGGTGAA
GGTCGGAACCGACAGCCTCCTCCGAGAAGGGCAGGAGCTGGGAGGAGGCGGCAGCGGCGGCGGCAGAAACAGCAGCGGCGGCGGCGGCGG
CAGCTGGGAGGAGGTGGTGACGGTGGCAACGGCAGCGTCGGGGACGATGGCGCGACTCGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTT
CCCCTTCGAGAGGAGGCAGATTCCCCTCTACATAGACGACACCCTGACGGTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGG
CTTTACTCCCGTCGTGGACGATCCTGTGACAGAGAGAGTGAGGAAGAACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCC
TCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTGCACCTGTTCTTCCCGGAGCCTATCAGCAAAGCCATTCCCAAGGCTATGG
CTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCATTCACCAAATCTAAGGACCTACCGAGCCATGTACGATTACAGTGC
CCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACTACATCGTCAACGTGCAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCA
GAGAACAGGGAGAACAGGAATGCTCCCAGCGAATTACATTGAGTTTGTTAATTAATTATTTCTCCCTGCCCTTTGAGCTTTATTCTAATG
TATCCCAAACCTAATCTTTTTAAAAGATAGAAGATACTTTTAAGACAACTTGGCCATTATTTTACAATGATGTATCCTTCCTTTGACAAT
TAGACACACAGGTACCAGGAAGAAGGAATGACCTCTGGGCTGAAAACAGCAGCATTTTCAGTAATTCCTACAAACAAAAATCTTTGTGTC
TGGACACCTGGTGCTGCTAATTGTGTTCATGGTTTCCTTTGATTGGCTATTGAACCCTTCTGGGAAATGTATTTTTGTAGACTTTAATAG
AGAAGTTGATTGTCCCTTAAATGTAGTGTGTGTTTGAAACTTCTTAGCTGTCACTTTGGAATCACCCCAAGCCAATTCTCTTAACTCTGT
AATGCAGCCAATAATTTCAAACCCGTTTTGCTTTTGAGTCATGAGGCAATTTCCAATATTAGTGAAAATTGCCCAATATAATAAGTGTAA
ACAGTGGCAGAAGGACAGTCTGGTTAAAATTATATTGACTGGTGGCCTTAGGGATCTAGAAACTTCTACTAAACAGAGAAATTTCCTTGT
TCCCTAGGCTGACTGGTATCTATTTATTTCTCATTTGTACCAAGGCATCTCCTACTCTCCATTTATATTCTATGGACCCAAGTCTATGCT
CAGTTCCACAGAATGTCAGGACCAAATAACTTCACAGCTACTCTGCAAAGGGCAAATTATAATGTCATTGATATAATTTCCCTAGTAGCA
TTTACCCTGTTGCATGTCATGTAGATTCAAGCTTCTGTAACATAGGCAGCTGCACTGCGCGTTCCTATTATTGAAGCAAAAAGGGTGACT
GATACCTAAAAGCCCTTTCTTCCTCTAGTCGCCAGCTCATCAGAAAAACATACTTTGAAAAGATGCTTGAGATTTTCCTGCTGCATCGCA
CTCTAGTTTTGAAGGATTTACATCTTAGGAAATAACATGTATACTCTAGTAAATAAGCGATTTAGGTGTTCCATTGAACAGCTTTGATTA
ACTTAATGCCACCATTGATTTCAAAGTGAAGAAAATGTAACAGAAGCCAGTGAAGCAATGGAAGCTGGAGTGTGACTGGAAAAATACTCA
GCAAACAAAGTTACCAATTCCATACAGAGATGATCTGGTATCTTCTTTTGGAAAATGGTATTCAAATTCTGGAATGGAAATCTAGCCACC
AAAACGGGTTAATCAAAAGACGTCCTTTTCCATTTTTTTTTGCTTTTATTTTCTAAATCATTTTTAAGGGAATGAAACAGGAATGTCATC
AGAGATTTTTTAGTACAGGCCCAAGAGCCTGTTCTCTAAGAAAGAAATTGTTGCCATGTTTTGATTTTCGAATAAGTGACTTTGCAGGCT
TTATGCTAGCCCTTGCTGGTGGGTCTTGAAATTTCATCCAGAGTCTGCAGTCCAGGTCACCAAGCCAGCGGCACCCGTCGGCAACCCTGT
GTTTTTCTGATTGTGCCGTTTACTGTGACCTGCAACGGGGTGGCATTCACTTAGGGTCTGACTTCACAGCTATGACAAAACCGAAAAAGC
AAAACTGCAAAAAAGTACTAAGATGTACGGGTCTTGGGGATATCTGCCTTATATGTTATATTCAAGGAAATTAACAAAACATCCTGTAAA
ACATCGTTTAAGGAAACGTTTACTAGTCCAAAGGCCAAAGCTAATTTATTTCCACTTTAGAAAAGTTAGCACATGCTTTTGAAAATCTGT
GATTTCATTTTATTAGGCTAAAAGGGTAAATAGGCTTTATTACACTGAAGCTGCATCTATATGTCACTGACATAAAGTTGAAAAAATAAA

>In-frame_GGNBP2_ENST00000304718_chr17_34901666_+_NEBL_ENST00000377159_chr10_21101869_-_1141nt
ACCTTCCCCTCGTCCCCCGCCCTCCTTCTTCCACTCCCCGCGGCGCGAGCGGCTGACTGCCCGTAGAGGAAACGACATTCGGAGCTGCGC
TCCCGCCCAGGCCGGCCCTGACGCGGGCCTCGTCAGCCAGTAACAGGGAGCAGAGGTGGGAGTTAGCGAGGCGACCACGAAAACGGTGAA
GGTCGGAACCGACAGCCTCCTCCGAGAAGGGCAGGAGCTGGGAGGAGGCGGCAGCGGCGGCGGCAGAAACAGCAGCGGCGGCGGCGGCGG
CAGCTGGGAGGAGGTGGTGACGGTGGCAACGGCAGCGTCGGGGACGATGGCGCGACTCGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTT
CCCCTTCGAGAGGAGGCAGATTCCCCTCTACATAGACGACACCCTGACGGTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGG
CTTTACTCCCGTCGTGGACGATCCTGTGACAGAGAGAGTGAGGAAGAACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCC
TCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTGCACCTGTTCTTCCCGGAGCCTATCAGCAAAGCCATTCCCAAGGCTATGG
CTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCATTCACCAAATCTAAGGACCTACCGAGCCATGTACGATTACAGTGC
CCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACTACATCGTCAACGTGCAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCA
GAGAACAGGGAGAACAGGAATGCTCCCAGCGAATTACATTGAGTTTGTTAATTAATTATTTCTCCCTGCCCTTTGAGCTTTATTCTAATG
TATCCCAAACCTAATCTTTTTAAAAGATAGAAGATACTTTTAAGACAACTTGGCCATTATTTTACAATGATGTATCCTTCCTTTGACAAT
TAGACACACAGGTACCAGGAAGAAGGAATGACCTCTGGGCTGAAAACAGCAGCATTTTCAGTAATTCCTACAAACAAAAATCTTTGTGTC


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FusionGenePPI for GGNBP2_NEBL


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
GGNBP2FBXW11, PAK4, BTRC, CNOT11, ZNF331NEBLMYPN, ZYX, MED28, XIRP2, XIRP1, PRKAB2, TRIM63, TRIM55, ACTN3, GOLGA2, TRIM27, TRAF1, TRAF2, MAD1L1, HOMER3, GMCL1, CCDC136, LZTS2, MIPOL1, FAM9B, NUTM1, ZDHHC17, CEP170, CEP128, SCLT1, DCTN1, CDH1, ZNF764, GCHFR, DHX38, CARKD


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for GGNBP2_NEBL


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for GGNBP2_NEBL


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource