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Fusion gene ID: 14480 |
FusionGeneSummary for GBE1_FAM19A1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: GBE1_FAM19A1 | Fusion gene ID: 14480 | Hgene | Tgene | Gene symbol | GBE1 | FAM19A1 | Gene ID | 2632 | 407738 |
Gene name | 1,4-alpha-glucan branching enzyme 1 | family with sequence similarity 19 member A1, C-C motif chemokine like | |
Synonyms | APBD|GBE|GSD4 | TAFA-1|TAFA1 | |
Cytomap | 3p12.2 | 3p14.1 | |
Type of gene | protein-coding | protein-coding | |
Description | 1,4-alpha-glucan-branching enzymeamylo-(1,4 to 1,6) transglucosidaseamylo-(1,4 to 1,6) transglycosylasebrancher enzymeglucan (1,4-alpha-), branching enzyme 1glycogen branching enzyme | protein FAM19A1chemokine-like protein TAFA-1family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q04446 | Q7Z5A9 | |
Ensembl transtripts involved in fusion gene | ENST00000429644, ENST00000489715, ENST00000477426, | ENST00000478136, ENST00000496687, ENST00000491017, | |
Fusion gene scores | * DoF score | 5 X 5 X 4=100 | 5 X 3 X 4=60 |
# samples | 5 | 5 | |
** MAII score | log2(5/100*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: GBE1 [Title/Abstract] AND FAM19A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | GBE1 | GO:0005978 | glycogen biosynthetic process | 26199317 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SKCM | TCGA-WE-A8ZR-06A | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000429644 | ENST00000478136 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
In-frame | ENST00000429644 | ENST00000496687 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
5CDS-3UTR | ENST00000429644 | ENST00000491017 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
In-frame | ENST00000489715 | ENST00000478136 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
In-frame | ENST00000489715 | ENST00000496687 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
5CDS-3UTR | ENST00000489715 | ENST00000491017 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
intron-3CDS | ENST00000477426 | ENST00000478136 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
intron-3CDS | ENST00000477426 | ENST00000496687 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
intron-3UTR | ENST00000477426 | ENST00000491017 | GBE1 | chr3 | 81643059 | - | FAM19A1 | chr3 | 68466430 | + |
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FusionProtFeatures for GBE1_FAM19A1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
GBE1 | FAM19A1 |
Required for normal glycogen accumulation(PubMed:8463281, PubMed:26199317, PubMed:8613547). The alpha 1-6branches of glycogen play an important role in increasing thesolubility of the molecule (Probable).{ECO:0000269|PubMed:26199317, ECO:0000269|PubMed:8463281,ECO:0000269|PubMed:8613547, ECO:0000305}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | GBE1 | chr3:81643059 | chr3:68466430 | ENST00000429644 | - | 8 | 16 | 118_121 | 369 | 703 | Region | Substrate binding |
Hgene | GBE1 | chr3:81643059 | chr3:68466430 | ENST00000429644 | - | 8 | 16 | 333_336 | 369 | 703 | Region | Substrate binding |
Hgene | GBE1 | chr3:81643059 | chr3:68466430 | ENST00000429644 | - | 8 | 16 | 62_63 | 369 | 703 | Region | Substrate binding |
Hgene | GBE1 | chr3:81643059 | chr3:68466430 | ENST00000429644 | - | 8 | 16 | 91_93 | 369 | 703 | Region | Substrate binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GBE1_FAM19A1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_GBE1_ENST00000429644_chr3_81643059_-_FAM19A1_ENST00000478136_chr3_68466430_+_464aa MAAPMTPAARPEDYEAALNAALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKE WAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDP EHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELQ ELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVT SMLYHHHGVEGGTCEVIAAHRCCNKNRIEERSQTVKCSCLPGKVAGTTRNRPSCVDASIVIGKWWCEMEPCLEGEECKTLPDNSGWMCAT >In-frame_GBE1_ENST00000429644_chr3_81643059_-_FAM19A1_ENST00000496687_chr3_68466430_+_464aa MAAPMTPAARPEDYEAALNAALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKE WAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDP EHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELQ ELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVT SMLYHHHGVEGGTCEVIAAHRCCNKNRIEERSQTVKCSCLPGKVAGTTRNRPSCVDASIVIGKWWCEMEPCLEGEECKTLPDNSGWMCAT >In-frame_GBE1_ENST00000489715_chr3_81643059_-_FAM19A1_ENST00000478136_chr3_68466430_+_423aa MNLAKVRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQN KSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTC NVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYF HSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVEGGTCEVIAAHRCCNKNRIEERSQTVKCSCLP >In-frame_GBE1_ENST00000489715_chr3_81643059_-_FAM19A1_ENST00000496687_chr3_68466430_+_423aa MNLAKVRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQN KSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTC NVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYF HSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVEGGTCEVIAAHRCCNKNRIEERSQTVKCSCLP |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_GBE1_ENST00000429644_chr3_81643059_-_FAM19A1_ENST00000478136_chr3_68466430_+_1392nt ATGGCGGCTCCGATGACTCCCGCGGCTCGGCCCGAGGACTACGAGGCGGCGCTCAATGCCGCCCTGGCTGACGTGCCCGAACTGGCCAGA CTCCTGGAGATCGACCCGTACTTGAAGCCCTACGCCGTGGACTTCCAGCGCAGGTATAAGCAGTTTAGCCAAATTTTGAAGAACATTGGA GAAAATGAAGGTGGTATTGATAAGTTTTCCAGAGGCTATGAATCATTTGGCGTCCACAGATGTGCTGATGGTGGTTTATACTGCAAAGAA TGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACTGGAGATTTTAATGGTTGGAATCCATTTTCGTACCCATACAAAAAACTGGATTATGGA AAATGGGAGCTGTATATCCCACCAAAGCAGAATAAATCTGTACTCGTGCCTCATGGATCCAAATTAAAGGTAGTTATTACTAGTAAAAGC GGAGAGATCTTGTATCGTATTTCACCGTGGGCAAAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATGATTGGATACACTGGGATCCA GAACACTCATATGAGTTTAAGCATTCCAGACCAAAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATGTGGGAATTTCTTCCCATGAA GGAAAAGTAGCTTCTTATAAACATTTTACATGCAATGTACTACCAAGAATCAAAGGCCTTGGATACAACTGCATTCAGTTGATGGCAATC ATGGAGCATGCTTACTATGCCAGCTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATGGAACACCTGAAGAGCTACAA GAACTGGTAGACACAGCTCATTCCATGGGTATCATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAAAAAATTCAGCAGATGGATTG AATATGTTTGATGGGACAGATTCCTGTTATTTTCATTCTGGACCTAGAGGGACTCATGATCTTTGGGATAGCAGATTGTTTGCCTACTCC AGCTGGGAAATTTTAAGATTCCTTCTGTCAAACATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGATTTCGTTTTGATGGTGTTACG TCCATGCTTTATCATCACCATGGAGTGGAAGGAGGGACGTGTGAAGTGATAGCAGCACACCGATGTTGTAACAAGAATCGCATTGAGGAG CGGTCACAAACAGTAAAGTGTTCCTGTCTACCTGGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTTGCGTCGATGCCTCCATAGTG ATTGGGAAATGGTGGTGTGAGATGGAGCCTTGCCTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATTCTGGATGGATGTGCGCAACA >In-frame_GBE1_ENST00000429644_chr3_81643059_-_FAM19A1_ENST00000496687_chr3_68466430_+_1392nt ATGGCGGCTCCGATGACTCCCGCGGCTCGGCCCGAGGACTACGAGGCGGCGCTCAATGCCGCCCTGGCTGACGTGCCCGAACTGGCCAGA CTCCTGGAGATCGACCCGTACTTGAAGCCCTACGCCGTGGACTTCCAGCGCAGGTATAAGCAGTTTAGCCAAATTTTGAAGAACATTGGA GAAAATGAAGGTGGTATTGATAAGTTTTCCAGAGGCTATGAATCATTTGGCGTCCACAGATGTGCTGATGGTGGTTTATACTGCAAAGAA TGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACTGGAGATTTTAATGGTTGGAATCCATTTTCGTACCCATACAAAAAACTGGATTATGGA AAATGGGAGCTGTATATCCCACCAAAGCAGAATAAATCTGTACTCGTGCCTCATGGATCCAAATTAAAGGTAGTTATTACTAGTAAAAGC GGAGAGATCTTGTATCGTATTTCACCGTGGGCAAAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATGATTGGATACACTGGGATCCA GAACACTCATATGAGTTTAAGCATTCCAGACCAAAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATGTGGGAATTTCTTCCCATGAA GGAAAAGTAGCTTCTTATAAACATTTTACATGCAATGTACTACCAAGAATCAAAGGCCTTGGATACAACTGCATTCAGTTGATGGCAATC ATGGAGCATGCTTACTATGCCAGCTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATGGAACACCTGAAGAGCTACAA GAACTGGTAGACACAGCTCATTCCATGGGTATCATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAAAAAATTCAGCAGATGGATTG AATATGTTTGATGGGACAGATTCCTGTTATTTTCATTCTGGACCTAGAGGGACTCATGATCTTTGGGATAGCAGATTGTTTGCCTACTCC AGCTGGGAAATTTTAAGATTCCTTCTGTCAAACATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGATTTCGTTTTGATGGTGTTACG TCCATGCTTTATCATCACCATGGAGTGGAAGGAGGGACGTGTGAAGTGATAGCAGCACACCGATGTTGTAACAAGAATCGCATTGAGGAG CGGTCACAAACAGTAAAGTGTTCCTGTCTACCTGGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTTGCGTCGATGCCTCCATAGTG ATTGGGAAATGGTGGTGTGAGATGGAGCCTTGCCTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATTCTGGATGGATGTGCGCAACA >In-frame_GBE1_ENST00000489715_chr3_81643059_-_FAM19A1_ENST00000478136_chr3_68466430_+_1269nt ATGAATCTTGCTAAAGTGAGGTATAAGCAGTTTAGCCAAATTTTGAAGAACATTGGAGAAAATGAAGGTGGTATTGATAAGTTTTCCAGA GGCTATGAATCATTTGGCGTCCACAGATGTGCTGATGGTGGTTTATACTGCAAAGAATGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACT GGAGATTTTAATGGTTGGAATCCATTTTCGTACCCATACAAAAAACTGGATTATGGAAAATGGGAGCTGTATATCCCACCAAAGCAGAAT AAATCTGTACTCGTGCCTCATGGATCCAAATTAAAGGTAGTTATTACTAGTAAAAGCGGAGAGATCTTGTATCGTATTTCACCGTGGGCA AAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATGATTGGATACACTGGGATCCAGAACACTCATATGAGTTTAAGCATTCCAGACCA AAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATGTGGGAATTTCTTCCCATGAAGGAAAAGTAGCTTCTTATAAACATTTTACATGC AATGTACTACCAAGAATCAAAGGCCTTGGATACAACTGCATTCAGTTGATGGCAATCATGGAGCATGCTTACTATGCCAGCTTTGGTTAC CAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATGGAACACCTGAAGAGCTACAAGAACTGGTAGACACAGCTCATTCCATGGGTATC ATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAAAAAATTCAGCAGATGGATTGAATATGTTTGATGGGACAGATTCCTGTTATTTT CATTCTGGACCTAGAGGGACTCATGATCTTTGGGATAGCAGATTGTTTGCCTACTCCAGCTGGGAAATTTTAAGATTCCTTCTGTCAAAC ATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGATTTCGTTTTGATGGTGTTACGTCCATGCTTTATCATCACCATGGAGTGGAAGGA GGGACGTGTGAAGTGATAGCAGCACACCGATGTTGTAACAAGAATCGCATTGAGGAGCGGTCACAAACAGTAAAGTGTTCCTGTCTACCT GGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTTGCGTCGATGCCTCCATAGTGATTGGGAAATGGTGGTGTGAGATGGAGCCTTGC CTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATTCTGGATGGATGTGCGCAACAGGCAACAAAATTAAGACCACGAGAATTCACCCA >In-frame_GBE1_ENST00000489715_chr3_81643059_-_FAM19A1_ENST00000496687_chr3_68466430_+_1269nt ATGAATCTTGCTAAAGTGAGGTATAAGCAGTTTAGCCAAATTTTGAAGAACATTGGAGAAAATGAAGGTGGTATTGATAAGTTTTCCAGA GGCTATGAATCATTTGGCGTCCACAGATGTGCTGATGGTGGTTTATACTGCAAAGAATGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACT GGAGATTTTAATGGTTGGAATCCATTTTCGTACCCATACAAAAAACTGGATTATGGAAAATGGGAGCTGTATATCCCACCAAAGCAGAAT AAATCTGTACTCGTGCCTCATGGATCCAAATTAAAGGTAGTTATTACTAGTAAAAGCGGAGAGATCTTGTATCGTATTTCACCGTGGGCA AAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATGATTGGATACACTGGGATCCAGAACACTCATATGAGTTTAAGCATTCCAGACCA AAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATGTGGGAATTTCTTCCCATGAAGGAAAAGTAGCTTCTTATAAACATTTTACATGC AATGTACTACCAAGAATCAAAGGCCTTGGATACAACTGCATTCAGTTGATGGCAATCATGGAGCATGCTTACTATGCCAGCTTTGGTTAC CAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATGGAACACCTGAAGAGCTACAAGAACTGGTAGACACAGCTCATTCCATGGGTATC ATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAAAAAATTCAGCAGATGGATTGAATATGTTTGATGGGACAGATTCCTGTTATTTT CATTCTGGACCTAGAGGGACTCATGATCTTTGGGATAGCAGATTGTTTGCCTACTCCAGCTGGGAAATTTTAAGATTCCTTCTGTCAAAC ATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGATTTCGTTTTGATGGTGTTACGTCCATGCTTTATCATCACCATGGAGTGGAAGGA GGGACGTGTGAAGTGATAGCAGCACACCGATGTTGTAACAAGAATCGCATTGAGGAGCGGTCACAAACAGTAAAGTGTTCCTGTCTACCT GGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTTGCGTCGATGCCTCCATAGTGATTGGGAAATGGTGGTGTGAGATGGAGCCTTGC CTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATTCTGGATGGATGTGCGCAACAGGCAACAAAATTAAGACCACGAGAATTCACCCA 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* Fusion transcript sequences (Full-length transcript). |
>In-frame_GBE1_ENST00000429644_chr3_81643059_-_FAM19A1_ENST00000478136_chr3_68466430_+_3158nt AAACTTAGGAGAGTCCTGGTTGTAAGAGGTATTAACATTTTCAGCAGTAGTACTCTAGCTACACTTGACTGTTCCCCTCTCTGTGAATTT ACATGATATGTTTGAAATACTGCCCCTCAAAAGTCTCAGAACTTTGAGAAATACGGTCCTTTCCAAAAAAACCCCTTATGTCCAATTTGA AGGGGTCGCTGTCAGTGGGTGCTTAAGTGGGTAAAGAAAAGCCAAGAATATGTCAGGGTGAGGAAGGCCAAGGCTGAGCGAGGTCAGCTT GGGACCCACCTCCTAGAATGACCTCCGCCAGCAGGAAAAAACCGTTAAGGGGAGGAAAGGGCAGGTCCCTGCGGCCTCCAGGTGCCAGCC GCGTGAGTGGGCGGAGAGGCCTCGGTGCCTCCTACCCGCTCCGGACGTGCGTCCCGGCATCACCCCGGGATCCGCTCCTCCCCGCTGGCG GGGGGAGAAAGGGCAGGAGGCCTTCCGTCCCGGCTATAAAGGGCCCCGGACCGCCGCGGCTCGCCTCGGCTTGCCTCGACACGCCTAGGC GCCCTCCGGCTCCGCCCTAGCCGCCGCGTCCCAGCTAGAGCTCCAGCGCCCGCTCAGGCCCCACTCGACCTCTCGGGCCTCGGCTACTTG GACTGCGGCGGAATATGGCGGCTCCGATGACTCCCGCGGCTCGGCCCGAGGACTACGAGGCGGCGCTCAATGCCGCCCTGGCTGACGTGC CCGAACTGGCCAGACTCCTGGAGATCGACCCGTACTTGAAGCCCTACGCCGTGGACTTCCAGCGCAGGTATAAGCAGTTTAGCCAAATTT TGAAGAACATTGGAGAAAATGAAGGTGGTATTGATAAGTTTTCCAGAGGCTATGAATCATTTGGCGTCCACAGATGTGCTGATGGTGGTT TATACTGCAAAGAATGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACTGGAGATTTTAATGGTTGGAATCCATTTTCGTACCCATACAAAA AACTGGATTATGGAAAATGGGAGCTGTATATCCCACCAAAGCAGAATAAATCTGTACTCGTGCCTCATGGATCCAAATTAAAGGTAGTTA TTACTAGTAAAAGCGGAGAGATCTTGTATCGTATTTCACCGTGGGCAAAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATGATTGGA TACACTGGGATCCAGAACACTCATATGAGTTTAAGCATTCCAGACCAAAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATGTGGGAA TTTCTTCCCATGAAGGAAAAGTAGCTTCTTATAAACATTTTACATGCAATGTACTACCAAGAATCAAAGGCCTTGGATACAACTGCATTC AGTTGATGGCAATCATGGAGCATGCTTACTATGCCAGCTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATGGAACAC CTGAAGAGCTACAAGAACTGGTAGACACAGCTCATTCCATGGGTATCATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAAAAAATT CAGCAGATGGATTGAATATGTTTGATGGGACAGATTCCTGTTATTTTCATTCTGGACCTAGAGGGACTCATGATCTTTGGGATAGCAGAT TGTTTGCCTACTCCAGCTGGGAAATTTTAAGATTCCTTCTGTCAAACATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGATTTCGTT TTGATGGTGTTACGTCCATGCTTTATCATCACCATGGAGTGGAAGGAGGGACGTGTGAAGTGATAGCAGCACACCGATGTTGTAACAAGA ATCGCATTGAGGAGCGGTCACAAACAGTAAAGTGTTCCTGTCTACCTGGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTTGCGTCG ATGCCTCCATAGTGATTGGGAAATGGTGGTGTGAGATGGAGCCTTGCCTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATTCTGGAT GGATGTGCGCAACAGGCAACAAAATTAAGACCACGAGAATTCACCCAAGAACCTAACAGAAGCATTTGTGGTAGTAAAGGAAAACCAACC CTCTGGAAAATACATTTTGAGAATCTCAAACATCTCACATATATACAAGCCAAATGGATTTCTTACTTGCACTTTGACTGGCTACCAGAT AATCACAGTGCGTTTACTGTGTGTAACGAAATATCCTACAGTGAGAAGACACAGCGTTTTGGCAACACCATGGAAAGTGGGCTTAAAAAA GGGTTTTCTCAGTGAAATTTTTGGGCATCATGAAGAACGATCAACTATCTTCTAATTTGAATCTATAGTTACTTTGTACCATTTGAAATA TATGTATATATATATATATAATATTTTGAAATATTATCTATTCTCTTCAAGAAATGAACAGTACCACAGTTTGAGACGGCTGGTGTACCC CTTTGAGTTTTGGATGTTTTGTCTGTTTTGCTTTGTTTTGTTAGTCATTTCTTTTTCTAACGGCAAGGAAGATATGTGCCCTTTTGAGAA TTCAAGATGGCACTGACACGGGAAGGCCAGCTACAGGTGGACTCCTGGAATTTGAGGCATCATAATGATACTGAATCAAGAACTTCCTTC TGCTTCTACCAGATGGCCCAAGGAAGCACATCGTCCTGTTTTATTGCTTTCTACCCTGTGCAATATTAGCATGCAAGCTTGGCTTACATA GTCATACTTTATATTCAATTGATATATAATAACCGTTCTAACCTCTTCCAGGAAAATATTTTTAGAACTACTAGCTTTTCCACTTAGAAG AAAATGAGGATTCTTAAGGGAGCCACTCCACCATGCTATTAAGACTCTGGCAGAGTTATGGGTAGGATATGGATCCCTACATGAATAAGT CCTGTAAATACAATGTCTTAAGGCTTTGTATAGCTGTCCTAGACTGCAGAAATGTCCTCTGATTAAATCCAAAGTCTGGCATCGTTAACT ACATAGTGCTGTAGCAACAAGTCTTATCATGGCATCTCTTTCTATGTTTGGTTTGCTTTTTCCAAGAGTATTCAGGTCTCCTCTTGTGAG ATAGGAAGGCCATGAAAACAATTAGATTTCAAGATGATCTATGTGACCAAATGTTGGACAGCCCTATTAAAGTGGTAAACAACTTCTTTC >In-frame_GBE1_ENST00000429644_chr3_81643059_-_FAM19A1_ENST00000496687_chr3_68466430_+_3154nt AAACTTAGGAGAGTCCTGGTTGTAAGAGGTATTAACATTTTCAGCAGTAGTACTCTAGCTACACTTGACTGTTCCCCTCTCTGTGAATTT ACATGATATGTTTGAAATACTGCCCCTCAAAAGTCTCAGAACTTTGAGAAATACGGTCCTTTCCAAAAAAACCCCTTATGTCCAATTTGA AGGGGTCGCTGTCAGTGGGTGCTTAAGTGGGTAAAGAAAAGCCAAGAATATGTCAGGGTGAGGAAGGCCAAGGCTGAGCGAGGTCAGCTT GGGACCCACCTCCTAGAATGACCTCCGCCAGCAGGAAAAAACCGTTAAGGGGAGGAAAGGGCAGGTCCCTGCGGCCTCCAGGTGCCAGCC GCGTGAGTGGGCGGAGAGGCCTCGGTGCCTCCTACCCGCTCCGGACGTGCGTCCCGGCATCACCCCGGGATCCGCTCCTCCCCGCTGGCG GGGGGAGAAAGGGCAGGAGGCCTTCCGTCCCGGCTATAAAGGGCCCCGGACCGCCGCGGCTCGCCTCGGCTTGCCTCGACACGCCTAGGC GCCCTCCGGCTCCGCCCTAGCCGCCGCGTCCCAGCTAGAGCTCCAGCGCCCGCTCAGGCCCCACTCGACCTCTCGGGCCTCGGCTACTTG GACTGCGGCGGAATATGGCGGCTCCGATGACTCCCGCGGCTCGGCCCGAGGACTACGAGGCGGCGCTCAATGCCGCCCTGGCTGACGTGC CCGAACTGGCCAGACTCCTGGAGATCGACCCGTACTTGAAGCCCTACGCCGTGGACTTCCAGCGCAGGTATAAGCAGTTTAGCCAAATTT TGAAGAACATTGGAGAAAATGAAGGTGGTATTGATAAGTTTTCCAGAGGCTATGAATCATTTGGCGTCCACAGATGTGCTGATGGTGGTT TATACTGCAAAGAATGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACTGGAGATTTTAATGGTTGGAATCCATTTTCGTACCCATACAAAA AACTGGATTATGGAAAATGGGAGCTGTATATCCCACCAAAGCAGAATAAATCTGTACTCGTGCCTCATGGATCCAAATTAAAGGTAGTTA TTACTAGTAAAAGCGGAGAGATCTTGTATCGTATTTCACCGTGGGCAAAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATGATTGGA TACACTGGGATCCAGAACACTCATATGAGTTTAAGCATTCCAGACCAAAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATGTGGGAA TTTCTTCCCATGAAGGAAAAGTAGCTTCTTATAAACATTTTACATGCAATGTACTACCAAGAATCAAAGGCCTTGGATACAACTGCATTC AGTTGATGGCAATCATGGAGCATGCTTACTATGCCAGCTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATGGAACAC CTGAAGAGCTACAAGAACTGGTAGACACAGCTCATTCCATGGGTATCATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAAAAAATT CAGCAGATGGATTGAATATGTTTGATGGGACAGATTCCTGTTATTTTCATTCTGGACCTAGAGGGACTCATGATCTTTGGGATAGCAGAT TGTTTGCCTACTCCAGCTGGGAAATTTTAAGATTCCTTCTGTCAAACATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGATTTCGTT TTGATGGTGTTACGTCCATGCTTTATCATCACCATGGAGTGGAAGGAGGGACGTGTGAAGTGATAGCAGCACACCGATGTTGTAACAAGA ATCGCATTGAGGAGCGGTCACAAACAGTAAAGTGTTCCTGTCTACCTGGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTTGCGTCG ATGCCTCCATAGTGATTGGGAAATGGTGGTGTGAGATGGAGCCTTGCCTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATTCTGGAT GGATGTGCGCAACAGGCAACAAAATTAAGACCACGAGAATTCACCCAAGAACCTAACAGAAGCATTTGTGGTAGTAAAGGAAAACCAACC CTCTGGAAAATACATTTTGAGAATCTCAAACATCTCACATATATACAAGCCAAATGGATTTCTTACTTGCACTTTGACTGGCTACCAGAT AATCACAGTGCGTTTACTGTGTGTAACGAAATATCCTACAGTGAGAAGACACAGCGTTTTGGCAACACCATGGAAAGTGGGCTTAAAAAA GGGTTTTCTCAGTGAAATTTTTGGGCATCATGAAGAACGATCAACTATCTTCTAATTTGAATCTATAGTTACTTTGTACCATTTGAAATA TATGTATATATATATATATAATATTTTGAAATATTATCTATTCTCTTCAAGAAATGAACAGTACCACAGTTTGAGACGGCTGGTGTACCC CTTTGAGTTTTGGATGTTTTGTCTGTTTTGCTTTGTTTTGTTAGTCATTTCTTTTTCTAACGGCAAGGAAGATATGTGCCCTTTTGAGAA TTCAAGATGGCACTGACACGGGAAGGCCAGCTACAGGTGGACTCCTGGAATTTGAGGCATCATAATGATACTGAATCAAGAACTTCCTTC TGCTTCTACCAGATGGCCCAAGGAAGCACATCGTCCTGTTTTATTGCTTTCTACCCTGTGCAATATTAGCATGCAAGCTTGGCTTACATA GTCATACTTTATATTCAATTGATATATAATAACCGTTCTAACCTCTTCCAGGAAAATATTTTTAGAACTACTAGCTTTTCCACTTAGAAG AAAATGAGGATTCTTAAGGGAGCCACTCCACCATGCTATTAAGACTCTGGCAGAGTTATGGGTAGGATATGGATCCCTACATGAATAAGT CCTGTAAATACAATGTCTTAAGGCTTTGTATAGCTGTCCTAGACTGCAGAAATGTCCTCTGATTAAATCCAAAGTCTGGCATCGTTAACT ACATAGTGCTGTAGCAACAAGTCTTATCATGGCATCTCTTTCTATGTTTGGTTTGCTTTTTCCAAGAGTATTCAGGTCTCCTCTTGTGAG ATAGGAAGGCCATGAAAACAATTAGATTTCAAGATGATCTATGTGACCAAATGTTGGACAGCCCTATTAAAGTGGTAAACAACTTCTTTC >In-frame_GBE1_ENST00000489715_chr3_81643059_-_FAM19A1_ENST00000478136_chr3_68466430_+_2444nt AATTTCACTTGGATTCGGCCCAGATTAACAGCTGTTTCTAACTTCGTTGTCCCATGAATCTTGCTAAAGTGAGGTATAAGCAGTTTAGCC AAATTTTGAAGAACATTGGAGAAAATGAAGGTGGTATTGATAAGTTTTCCAGAGGCTATGAATCATTTGGCGTCCACAGATGTGCTGATG GTGGTTTATACTGCAAAGAATGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACTGGAGATTTTAATGGTTGGAATCCATTTTCGTACCCAT ACAAAAAACTGGATTATGGAAAATGGGAGCTGTATATCCCACCAAAGCAGAATAAATCTGTACTCGTGCCTCATGGATCCAAATTAAAGG TAGTTATTACTAGTAAAAGCGGAGAGATCTTGTATCGTATTTCACCGTGGGCAAAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATG ATTGGATACACTGGGATCCAGAACACTCATATGAGTTTAAGCATTCCAGACCAAAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATG TGGGAATTTCTTCCCATGAAGGAAAAGTAGCTTCTTATAAACATTTTACATGCAATGTACTACCAAGAATCAAAGGCCTTGGATACAACT GCATTCAGTTGATGGCAATCATGGAGCATGCTTACTATGCCAGCTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATG GAACACCTGAAGAGCTACAAGAACTGGTAGACACAGCTCATTCCATGGGTATCATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAA AAAATTCAGCAGATGGATTGAATATGTTTGATGGGACAGATTCCTGTTATTTTCATTCTGGACCTAGAGGGACTCATGATCTTTGGGATA GCAGATTGTTTGCCTACTCCAGCTGGGAAATTTTAAGATTCCTTCTGTCAAACATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGAT TTCGTTTTGATGGTGTTACGTCCATGCTTTATCATCACCATGGAGTGGAAGGAGGGACGTGTGAAGTGATAGCAGCACACCGATGTTGTA ACAAGAATCGCATTGAGGAGCGGTCACAAACAGTAAAGTGTTCCTGTCTACCTGGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTT GCGTCGATGCCTCCATAGTGATTGGGAAATGGTGGTGTGAGATGGAGCCTTGCCTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATT CTGGATGGATGTGCGCAACAGGCAACAAAATTAAGACCACGAGAATTCACCCAAGAACCTAACAGAAGCATTTGTGGTAGTAAAGGAAAA CCAACCCTCTGGAAAATACATTTTGAGAATCTCAAACATCTCACATATATACAAGCCAAATGGATTTCTTACTTGCACTTTGACTGGCTA CCAGATAATCACAGTGCGTTTACTGTGTGTAACGAAATATCCTACAGTGAGAAGACACAGCGTTTTGGCAACACCATGGAAAGTGGGCTT AAAAAAGGGTTTTCTCAGTGAAATTTTTGGGCATCATGAAGAACGATCAACTATCTTCTAATTTGAATCTATAGTTACTTTGTACCATTT GAAATATATGTATATATATATATATAATATTTTGAAATATTATCTATTCTCTTCAAGAAATGAACAGTACCACAGTTTGAGACGGCTGGT GTACCCCTTTGAGTTTTGGATGTTTTGTCTGTTTTGCTTTGTTTTGTTAGTCATTTCTTTTTCTAACGGCAAGGAAGATATGTGCCCTTT TGAGAATTCAAGATGGCACTGACACGGGAAGGCCAGCTACAGGTGGACTCCTGGAATTTGAGGCATCATAATGATACTGAATCAAGAACT TCCTTCTGCTTCTACCAGATGGCCCAAGGAAGCACATCGTCCTGTTTTATTGCTTTCTACCCTGTGCAATATTAGCATGCAAGCTTGGCT TACATAGTCATACTTTATATTCAATTGATATATAATAACCGTTCTAACCTCTTCCAGGAAAATATTTTTAGAACTACTAGCTTTTCCACT TAGAAGAAAATGAGGATTCTTAAGGGAGCCACTCCACCATGCTATTAAGACTCTGGCAGAGTTATGGGTAGGATATGGATCCCTACATGA ATAAGTCCTGTAAATACAATGTCTTAAGGCTTTGTATAGCTGTCCTAGACTGCAGAAATGTCCTCTGATTAAATCCAAAGTCTGGCATCG TTAACTACATAGTGCTGTAGCAACAAGTCTTATCATGGCATCTCTTTCTATGTTTGGTTTGCTTTTTCCAAGAGTATTCAGGTCTCCTCT TGTGAGATAGGAAGGCCATGAAAACAATTAGATTTCAAGATGATCTATGTGACCAAATGTTGGACAGCCCTATTAAAGTGGTAAACAACT >In-frame_GBE1_ENST00000489715_chr3_81643059_-_FAM19A1_ENST00000496687_chr3_68466430_+_2440nt AATTTCACTTGGATTCGGCCCAGATTAACAGCTGTTTCTAACTTCGTTGTCCCATGAATCTTGCTAAAGTGAGGTATAAGCAGTTTAGCC AAATTTTGAAGAACATTGGAGAAAATGAAGGTGGTATTGATAAGTTTTCCAGAGGCTATGAATCATTTGGCGTCCACAGATGTGCTGATG GTGGTTTATACTGCAAAGAATGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACTGGAGATTTTAATGGTTGGAATCCATTTTCGTACCCAT ACAAAAAACTGGATTATGGAAAATGGGAGCTGTATATCCCACCAAAGCAGAATAAATCTGTACTCGTGCCTCATGGATCCAAATTAAAGG TAGTTATTACTAGTAAAAGCGGAGAGATCTTGTATCGTATTTCACCGTGGGCAAAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATG ATTGGATACACTGGGATCCAGAACACTCATATGAGTTTAAGCATTCCAGACCAAAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATG TGGGAATTTCTTCCCATGAAGGAAAAGTAGCTTCTTATAAACATTTTACATGCAATGTACTACCAAGAATCAAAGGCCTTGGATACAACT GCATTCAGTTGATGGCAATCATGGAGCATGCTTACTATGCCAGCTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATG GAACACCTGAAGAGCTACAAGAACTGGTAGACACAGCTCATTCCATGGGTATCATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAA AAAATTCAGCAGATGGATTGAATATGTTTGATGGGACAGATTCCTGTTATTTTCATTCTGGACCTAGAGGGACTCATGATCTTTGGGATA GCAGATTGTTTGCCTACTCCAGCTGGGAAATTTTAAGATTCCTTCTGTCAAACATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGAT TTCGTTTTGATGGTGTTACGTCCATGCTTTATCATCACCATGGAGTGGAAGGAGGGACGTGTGAAGTGATAGCAGCACACCGATGTTGTA ACAAGAATCGCATTGAGGAGCGGTCACAAACAGTAAAGTGTTCCTGTCTACCTGGAAAAGTGGCTGGAACAACAAGAAACCGGCCTTCTT GCGTCGATGCCTCCATAGTGATTGGGAAATGGTGGTGTGAGATGGAGCCTTGCCTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATT CTGGATGGATGTGCGCAACAGGCAACAAAATTAAGACCACGAGAATTCACCCAAGAACCTAACAGAAGCATTTGTGGTAGTAAAGGAAAA CCAACCCTCTGGAAAATACATTTTGAGAATCTCAAACATCTCACATATATACAAGCCAAATGGATTTCTTACTTGCACTTTGACTGGCTA CCAGATAATCACAGTGCGTTTACTGTGTGTAACGAAATATCCTACAGTGAGAAGACACAGCGTTTTGGCAACACCATGGAAAGTGGGCTT AAAAAAGGGTTTTCTCAGTGAAATTTTTGGGCATCATGAAGAACGATCAACTATCTTCTAATTTGAATCTATAGTTACTTTGTACCATTT GAAATATATGTATATATATATATATAATATTTTGAAATATTATCTATTCTCTTCAAGAAATGAACAGTACCACAGTTTGAGACGGCTGGT GTACCCCTTTGAGTTTTGGATGTTTTGTCTGTTTTGCTTTGTTTTGTTAGTCATTTCTTTTTCTAACGGCAAGGAAGATATGTGCCCTTT TGAGAATTCAAGATGGCACTGACACGGGAAGGCCAGCTACAGGTGGACTCCTGGAATTTGAGGCATCATAATGATACTGAATCAAGAACT TCCTTCTGCTTCTACCAGATGGCCCAAGGAAGCACATCGTCCTGTTTTATTGCTTTCTACCCTGTGCAATATTAGCATGCAAGCTTGGCT TACATAGTCATACTTTATATTCAATTGATATATAATAACCGTTCTAACCTCTTCCAGGAAAATATTTTTAGAACTACTAGCTTTTCCACT TAGAAGAAAATGAGGATTCTTAAGGGAGCCACTCCACCATGCTATTAAGACTCTGGCAGAGTTATGGGTAGGATATGGATCCCTACATGA ATAAGTCCTGTAAATACAATGTCTTAAGGCTTTGTATAGCTGTCCTAGACTGCAGAAATGTCCTCTGATTAAATCCAAAGTCTGGCATCG TTAACTACATAGTGCTGTAGCAACAAGTCTTATCATGGCATCTCTTTCTATGTTTGGTTTGCTTTTTCCAAGAGTATTCAGGTCTCCTCT TGTGAGATAGGAAGGCCATGAAAACAATTAGATTTCAAGATGATCTATGTGACCAAATGTTGGACAGCCCTATTAAAGTGGTAAACAACT 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FusionGenePPI for GBE1_FAM19A1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GBE1 | ELAVL1, DAK, TRDMT1, EPHB3, PRMT6, ACO1, ADI1, CDA, DNM2, DNM3, GSS, NLE1, PYGB, PYGL, PYGM, UMPS, MIF, PRICKLE3, OAZ1, VAPA, KIFAP3, SETD4, STBD1, GYS1, GYG1, HMGN2 | FAM19A1 | RABGGTB, NRXN3, ZER1, M6PR |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GBE1_FAM19A1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GBE1_FAM19A1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | GBE1 | C0017923 | Glycogen Storage Disease Type IV | 5 | CTD_human;ORPHANET;UNIPROT |
Hgene | GBE1 | C1849722 | Polyglucosan Body Disease, Adult Form | 1 | ORPHANET;UNIPROT |