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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 14092

FusionGeneSummary for FUS_RUNX1

check button Fusion gene summary
Fusion gene informationFusion gene name: FUS_RUNX1
Fusion gene ID: 14092
HgeneTgene
Gene symbol

FUS

RUNX1

Gene ID

2521

861

Gene nameFUS RNA binding proteinrunt related transcription factor 1
SynonymsALS6|ETM4|FUS1|HNRNPP2|POMP75|TLSAML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha
Cytomap

16p11.2

21q22.12

Type of geneprotein-codingprotein-coding
DescriptionRNA-binding protein FUS75 kDa DNA-pairing proteinFUS/ERG chimeric proteinFUS/ERG fusion proteinfus-like proteinfused in sarcomafusion gene in myxoid liposarcomaheterogeneous nuclear ribonucleoprotein P2oncogene FUSoncogene TLStranslocated in liprunt-related transcription factor 1AML1-EVI-1 fusion proteinPEA2-alpha BPEBP2-alpha BSL3-3 enhancer factor 1 alpha B subunitSL3/AKV core-binding factor alpha B subunitacute myeloid leukemia 1 proteincore-binding factor, runt domain, alpha subunit 2
Modification date2018052720180527
UniProtAcc

P35637

Q01196

Ensembl transtripts involved in fusion geneENST00000254108, ENST00000380244, 
ENST00000568685, ENST00000474990, 
ENST00000344691, ENST00000325074, 
ENST00000437180, ENST00000300305, 
ENST00000399240, ENST00000486278, 
ENST00000494829, ENST00000358356, 
Fusion gene scores* DoF score21 X 23 X 7=338117 X 29 X 7=3451
# samples 2733
** MAII scorelog2(27/3381*10)=-3.64641870384255
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(33/3451*10)=-3.3864765441897
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FUS [Title/Abstract] AND RUNX1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneRUNX1

GO:0030097

hemopoiesis

21873977

TgeneRUNX1

GO:0045893

positive regulation of transcription, DNA-templated

10207087|14970218

TgeneRUNX1

GO:0045944

positive regulation of transcription by RNA polymerase II

9199349|10207087|14970218|21873977


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BF889377FUSchr16

31200287

-RUNX1chr21

36226942

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000254108ENST00000344691FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000254108ENST00000325074FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000254108ENST00000437180FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000254108ENST00000300305FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000254108ENST00000399240FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000254108ENST00000486278FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000254108ENST00000494829FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000254108ENST00000358356FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000380244ENST00000344691FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000380244ENST00000325074FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000380244ENST00000437180FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000380244ENST00000300305FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000380244ENST00000399240FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000380244ENST00000486278FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000380244ENST00000494829FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000380244ENST00000358356FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000568685ENST00000344691FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000568685ENST00000325074FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000568685ENST00000437180FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000568685ENST00000300305FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000568685ENST00000399240FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000568685ENST00000486278FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000568685ENST00000494829FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000568685ENST00000358356FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000474990ENST00000344691FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000474990ENST00000325074FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000474990ENST00000437180FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000474990ENST00000300305FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000474990ENST00000399240FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000474990ENST00000486278FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000474990ENST00000494829FUSchr16

31200287

-RUNX1chr21

36226942

+
intron-intronENST00000474990ENST00000358356FUSchr16

31200287

-RUNX1chr21

36226942

+

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FusionProtFeatures for FUS_RUNX1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FUS

P35637

RUNX1

Q01196

Binds both single-stranded and double-stranded DNA andpromotes ATP-independent annealing of complementary single-stranded DNAs and D-loop formation in superhelical double-strandedDNA. May play a role in maintenance of genomic integrity.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for FUS_RUNX1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for FUS_RUNX1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for FUS_RUNX1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FUS_RUNX1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneFUSC1842675AMYOTROPHIC LATERAL SCLEROSIS 6 (disorder)6UNIPROT
HgeneFUSC0206634Liposarcoma, Myxoid2CTD_human;ORPHANET
HgeneFUSC3539195TREMOR, HEREDITARY ESSENTIAL, 41UNIPROT
TgeneRUNX1C0023467Leukemia, Myelocytic, Acute2CTD_human;HPO
TgeneRUNX1C0023485Precursor B-Cell Lymphoblastic Leukemia-Lymphoma2CTD_human
TgeneRUNX1C0003873Rheumatoid Arthritis1CTD_human
TgeneRUNX1C0017636Glioblastoma1CTD_human
TgeneRUNX1C0033578Prostatic Neoplasms1CTD_human
TgeneRUNX1C0349639Juvenile Myelomonocytic Leukemia1CTD_human
TgeneRUNX1C1832388Platelet Disorder, Familial, with Associated Myeloid Malignancy1CTD_human;ORPHANET;UNIPROT
TgeneRUNX1C1961102Precursor Cell Lymphoblastic Leukemia Lymphoma1CTD_human