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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 13946

FusionGeneSummary for FRS2_GRIP1

check button Fusion gene summary
Fusion gene informationFusion gene name: FRS2_GRIP1
Fusion gene ID: 13946
HgeneTgene
Gene symbol

FRS2

GRIP1

Gene ID

10818

85329

Gene namefibroblast growth factor receptor substrate 2galectin 12
SynonymsFRS1A|FRS2A|FRS2alpha|SNT|SNT-1|SNT1GAL12|GRIP1
Cytomap

12q15

11q12.3

Type of geneprotein-codingprotein-coding
Descriptionfibroblast growth factor receptor substrate 2FGFR signalling adaptorFGFR substrate 2FGFR-signaling adaptor SNTsuc1-associated neurotrophic factor target 1galectin-12galectin-related inhibitor of proliferationlectin, galactoside-binding, soluble, 12testicular secretory protein Li 26
Modification date2018052220180519
UniProtAcc

Q8WU20

Q9Y3R0

Ensembl transtripts involved in fusion geneENST00000299293, ENST00000549921, 
ENST00000550389, ENST00000397997, 
ENST00000398016, ENST00000359742, 
ENST00000286445, ENST00000542021, 
Fusion gene scores* DoF score56 X 9 X 12=604818 X 9 X 8=1296
# samples 4717
** MAII scorelog2(47/6048*10)=-3.68572547765607
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(17/1296*10)=-2.93045906674692
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FRS2 [Title/Abstract] AND GRIP1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneGRIP1

GO:0097193

intrinsic apoptotic signaling pathway

11435439


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVLGGTCGA-DU-A5TY-01AFRS2chr12

69864310

+GRIP1chr12

66800208

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000299293ENST00000398016FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-3CDSENST00000299293ENST00000359742FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-3CDSENST00000299293ENST00000286445FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-5UTRENST00000299293ENST00000542021FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-3CDSENST00000549921ENST00000398016FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-3CDSENST00000549921ENST00000359742FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-3CDSENST00000549921ENST00000286445FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-5UTRENST00000549921ENST00000542021FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-3CDSENST00000550389ENST00000398016FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-3CDSENST00000550389ENST00000359742FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-3CDSENST00000550389ENST00000286445FRS2chr12

69864310

+GRIP1chr12

66800208

-
5UTR-5UTRENST00000550389ENST00000542021FRS2chr12

69864310

+GRIP1chr12

66800208

-
intron-3CDSENST00000397997ENST00000398016FRS2chr12

69864310

+GRIP1chr12

66800208

-
intron-3CDSENST00000397997ENST00000359742FRS2chr12

69864310

+GRIP1chr12

66800208

-
intron-3CDSENST00000397997ENST00000286445FRS2chr12

69864310

+GRIP1chr12

66800208

-
intron-5UTRENST00000397997ENST00000542021FRS2chr12

69864310

+GRIP1chr12

66800208

-

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FusionProtFeatures for FRS2_GRIP1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FRS2

Q8WU20

GRIP1

Q9Y3R0

Adapter protein that links activated FGR and NGFreceptors to downstream signaling pathways. Plays an importantrole in the activation of MAP kinases and in the phosphorylationof PIK3R1, the regulatory subunit of phosphatidylinositol 3-kinase, in response to ligand-mediated activation of FGFR1.Modulates signaling via SHC1 by competing for a common bindingsite on NTRK1. {ECO:0000269|PubMed:12974390,ECO:0000269|PubMed:21765395}. May play a role as a localized scaffold for the assemblyof a multiprotein signaling complex and as mediator of thetrafficking of its binding partners at specific subcellularlocation in neurons (PubMed:10197531). Through complex formationwith NSG1, GRIA2 and STX12 controls the intracellular fate ofAMPAR and the endosomal sorting of the GRIA2 subunit towardrecycling and membrane targeting (By similarity).{ECO:0000250|UniProtKB:P97879, ECO:0000269|PubMed:10197531}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for FRS2_GRIP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for FRS2_GRIP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
FRS2PTPN11, INSR, SOS1, GRB2, CBL, FGFR1, CRK, NTRK1, NTRK2, NTRK3, RET, PRKCI, FGFR2, FLOT1, SORBS1, SPRY2, LYN, BECN1, RPS6, TMEM17, GAB1, GAB2, CDH1, TRIM25GRIP1AR, GRIK1, GRIK2, PRLHR, GRIA4, GRIA3, GRIA2, GRIA1, GRM3, GRIPAP1, NUMBL, CSPG4, HDAC1, GRIP1, EHMT2, NR3C1, SMAD3, EP300, CARM1, HIST1H3A, PPARG, RXRA, THRA, ESR1, VDR, PRMT1, EFNA5, CREBBP, NCOA6, CTNNB1, UBE2I, PRKD2, LATS2, YWHAB, GPR37, FLII, FNTB, GRM7, GRM2, B9D2, CEP135, DZIP3, AGAP2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for FRS2_GRIP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FRS2_GRIP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneGRIP1C0036341Schizophrenia1PSYGENET