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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 13932

FusionGeneSummary for FRS2_C12orf66

check button Fusion gene summary
Fusion gene informationFusion gene name: FRS2_C12orf66
Fusion gene ID: 13932
HgeneTgene
Gene symbol

FRS2

C12orf66

Gene ID

10818

144577

Gene namefibroblast growth factor receptor substrate 2chromosome 12 open reading frame 66
SynonymsFRS1A|FRS2A|FRS2alpha|SNT|SNT-1|SNT1-
Cytomap

12q15

12q14.2

Type of geneprotein-codingprotein-coding
Descriptionfibroblast growth factor receptor substrate 2FGFR signalling adaptorFGFR substrate 2FGFR-signaling adaptor SNTsuc1-associated neurotrophic factor target 1KICSTOR complex protein C12orf66UPF0536 protein C12orf66
Modification date2018052220180523
UniProtAcc

Q8WU20

Q96MD2

Ensembl transtripts involved in fusion geneENST00000299293, ENST00000549921, 
ENST00000550389, ENST00000397997, 
ENST00000311915, ENST00000544871, 
ENST00000398055, ENST00000540673, 
Fusion gene scores* DoF score56 X 9 X 12=60487 X 3 X 5=105
# samples 478
** MAII scorelog2(47/6048*10)=-3.68572547765607
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(8/105*10)=-0.39231742277876
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FRS2 [Title/Abstract] AND C12orf66 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSARCTCGA-DX-A2J4-01AFRS2chr12

69864310

+C12orf66chr12

64609743

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000299293ENST00000311915FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-3CDSENST00000299293ENST00000544871FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-3CDSENST00000299293ENST00000398055FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-intronENST00000299293ENST00000540673FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-3CDSENST00000549921ENST00000311915FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-3CDSENST00000549921ENST00000544871FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-3CDSENST00000549921ENST00000398055FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-intronENST00000549921ENST00000540673FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-3CDSENST00000550389ENST00000311915FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-3CDSENST00000550389ENST00000544871FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-3CDSENST00000550389ENST00000398055FRS2chr12

69864310

+C12orf66chr12

64609743

-
5UTR-intronENST00000550389ENST00000540673FRS2chr12

69864310

+C12orf66chr12

64609743

-
intron-3CDSENST00000397997ENST00000311915FRS2chr12

69864310

+C12orf66chr12

64609743

-
intron-3CDSENST00000397997ENST00000544871FRS2chr12

69864310

+C12orf66chr12

64609743

-
intron-3CDSENST00000397997ENST00000398055FRS2chr12

69864310

+C12orf66chr12

64609743

-
intron-intronENST00000397997ENST00000540673FRS2chr12

69864310

+C12orf66chr12

64609743

-

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FusionProtFeatures for FRS2_C12orf66


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FRS2

Q8WU20

C12orf66

Q96MD2

Adapter protein that links activated FGR and NGFreceptors to downstream signaling pathways. Plays an importantrole in the activation of MAP kinases and in the phosphorylationof PIK3R1, the regulatory subunit of phosphatidylinositol 3-kinase, in response to ligand-mediated activation of FGFR1.Modulates signaling via SHC1 by competing for a common bindingsite on NTRK1. {ECO:0000269|PubMed:12974390,ECO:0000269|PubMed:21765395}. As part of the KICSTOR complex functions in the aminoacid-sensing branch of the TORC1 signaling pathway. Recruits, inan amino acid-independent manner, the GATOR1 complex to thelysosomal membranes and allows its interaction with GATOR2 and theRAG GTPases. Functions upstream of the RAG GTPases and is requiredto negatively regulate mTORC1 signaling in absence of amino acids.In absence of the KICSTOR complex mTORC1 is constitutivelylocalized to the lysosome and activated. The KICSTOR complex isalso probably involved in the regulation of mTORC1 by glucose.{ECO:0000269|PubMed:28199306}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for FRS2_C12orf66


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for FRS2_C12orf66


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
FRS2PTPN11, INSR, SOS1, GRB2, CBL, FGFR1, CRK, NTRK1, NTRK2, NTRK3, RET, PRKCI, FGFR2, FLOT1, SORBS1, SPRY2, LYN, BECN1, RPS6, TMEM17, GAB1, GAB2, CDH1, TRIM25C12orf66KPTN, KRAS, ITFG2, C7orf60, DEPDC5


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for FRS2_C12orf66


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FRS2_C12orf66


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneC12orf66C0032460Polycystic Ovary Syndrome1CTD_human