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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 13778

FusionGeneSummary for FOXK2_ARFGAP1

check button Fusion gene summary
Fusion gene informationFusion gene name: FOXK2_ARFGAP1
Fusion gene ID: 13778
HgeneTgene
Gene symbol

FOXK2

ARFGAP1

Gene ID

3607

55738

Gene nameforkhead box K2ADP ribosylation factor GTPase activating protein 1
SynonymsILF|ILF-1|ILF1ARF1GAP|HRIHFB2281
Cytomap

17q25.3

20q13.33

Type of geneprotein-codingprotein-coding
Descriptionforkhead box protein K2FOXK1cellular transcription factor ILF-1interleukin enhancer-binding factor 1ADP-ribosylation factor GTPase-activating protein 1ARF1-directed GTPase-activating protein
Modification date2018052320180523
UniProtAcc

Q01167

Q8N6T3

Ensembl transtripts involved in fusion geneENST00000335255, ENST00000529652, 
ENST00000370283, ENST00000547204, 
ENST00000519604, ENST00000519273, 
ENST00000370275, ENST00000353546, 
ENST00000518794, 
Fusion gene scores* DoF score25 X 11 X 12=33005 X 6 X 3=90
# samples 238
** MAII scorelog2(23/3300*10)=-3.8427602581888
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(8/90*10)=-0.169925001442312
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FOXK2 [Title/Abstract] AND ARFGAP1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneFOXK2

GO:0045944

positive regulation of transcription by RNA polymerase II

9065434


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-AR-A24R-01AFOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3CDSENST00000335255ENST00000370283FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
3UTR-3CDSENST00000335255ENST00000547204FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
3UTR-3CDSENST00000335255ENST00000519604FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
3UTR-3CDSENST00000335255ENST00000519273FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
3UTR-3CDSENST00000335255ENST00000370275FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
3UTR-3CDSENST00000335255ENST00000353546FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
3UTR-intronENST00000335255ENST00000518794FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
intron-3CDSENST00000529652ENST00000370283FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
intron-3CDSENST00000529652ENST00000547204FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
intron-3CDSENST00000529652ENST00000519604FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
intron-3CDSENST00000529652ENST00000519273FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
intron-3CDSENST00000529652ENST00000370275FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
intron-3CDSENST00000529652ENST00000353546FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+
intron-intronENST00000529652ENST00000518794FOXK2chr17

80561551

+ARFGAP1chr20

61912643

+

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FusionProtFeatures for FOXK2_ARFGAP1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FOXK2

Q01167

ARFGAP1

Q8N6T3

Transcriptional regulator that recognizes the coresequence 5'-TAAACA-3'. Binds to NFAT-like motifs (purine-rich) inthe IL2 promoter (PubMed:1339390). Positively regulates WNT/beta-catenin signaling by translocating DVL proteins into the nucleus(PubMed:25805136). Also binds to HIV-1 long terminal repeat. Maybe involved in both positive and negative regulation of importantviral and cellular promoter elements (PubMed:1909027).{ECO:0000269|PubMed:1339390, ECO:0000269|PubMed:1909027,ECO:0000269|PubMed:25805136}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for FOXK2_ARFGAP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for FOXK2_ARFGAP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
FOXK2BAP1, AMOT, IRF2, CBX6, SOX2, HECW2, GPS2, RBBP7, SMU1, TEAD1, ESR1, BARD1, XPO1, SAP30, CTR9, HCFC1, MAX, TEAD2, FOXE1, FOXK1, SIN3A, ARID4B, BPTF, NCOR1, ARID4A, SMARCA5, TFAP4, MNT, SAP130, SUDS3, SMARCA1, ZBTB10, BRMS1L, KANSL1, TBL1XR1, ASXL2, BRMS1, MAP1B, TPR, CIC, C17orf49, LIG3, KMT2D, ASXL1, CHD4, HDAC2, ING2, MCRS1, PRDM10, RB1, RBBP5, TBP, KDM1B, DVL2, ING1, KDM5A, KANSL3, PHF20L1, CUX1, DMAP1, DRAP1, HIRA, HMGXB4, HOXD13, NCOR2, SATB2, SIN3B, TBL1X, TBL1Y, ADNP, C11orf30, KANSL2, DPY30, GTF3C3, H2AFY, HOXB9, NFYC, NRF1, NUP107, PSIP1, SAP30L, SF3B1, TP53BP1, SNX9, UBR4, RBM26, PUF60, ANKRD52, EIF2AK3, CHEK2, PRRC2C, UHRF1BP1, ANKRD28, SRPK2, CDK11A, KIAA0513, PER1, USP47, FLJ25613, TMF1, ABHD10, EIF5B, KANK2, RSRC2, FAM120A, NHP2, PHF23, SNRNP200, THRAP3, TP53, YTHDC1, HDAC1, NFATC1, DVL3, ZNF428, AHCYL2, TNFRSF1A, TULP3, FAM60A, PDGFRB, IKZF1, TP63, ZBTB39, CPD, TRIM25ARFGAP1RGS2, KDELR1, COPA, TK1, MAP1LC3B, SMN1, LRRK2, APP, RAD52, RAB23, PRKACB, RPL11, RFC3, REEP5, MED27, COPS5, RASIP1, ASB10, APOB, APOC3, APOE, RPL22, HK1, TRIM23, FOS, GRN, GABARAPL2, KRTAP3-2, KRTAP9-2, KRTAP10-9, RDH12, GSTM5, AURKA, ARF1, ARFGAP2, ARFGAP3, DLG3, LASP1, TCEA1, RABGAP1L, XPO1, TFRC, MIRLET7A1, INPPL1, MAU2, AP2A1, DIP2B, NIPBL, AP2M1, AP1B1, FNTB, AP2A2, SPAG9, POTEF, AP2S1, AP2B1, FNTA, TGFBRAP1, UFSP2, SEC63, STX5, TMEM206, RIC8A, CRMP1, CARM1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for FOXK2_ARFGAP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FOXK2_ARFGAP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneARFGAP1C0008073Developmental Disabilities1CTD_human
TgeneARFGAP1C0027765nervous system disorder1CTD_human