FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 13595

FusionGeneSummary for FLYWCH1_FAR1

check button Fusion gene summary
Fusion gene informationFusion gene name: FLYWCH1_FAR1
Fusion gene ID: 13595
HgeneTgene
Gene symbol

FLYWCH1

FAR1

Gene ID

84256

84188

Gene nameFLYWCH-type zinc finger 1fatty acyl-CoA reductase 1
Synonyms-MLSTD2|PFCRD|SDR10E1
Cytomap

16p13.3

11p15.3

Type of geneprotein-codingprotein-coding
DescriptionFLYWCH-type zinc finger-containing protein 1fatty acyl-CoA reductase 1male sterility domain-containing protein 2short chain dehydrogenase/reductase family 10E, member 1
Modification date2018051920180523
UniProtAcc

Q4VC44

Q8WVX9

Ensembl transtripts involved in fusion geneENST00000253928, ENST00000399667, 
ENST00000416288, ENST00000570752, 
ENST00000354817, ENST00000527202, 
ENST00000532502, 
Fusion gene scores* DoF score2 X 1 X 2=428 X 8 X 12=2688
# samples 231
** MAII scorelog2(2/4*10)=2.32192809488736log2(31/2688*10)=-3.11619301750452
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FLYWCH1 [Title/Abstract] AND FAR1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneFAR1

GO:0008611

ether lipid biosynthetic process

24108123

TgeneFAR1

GO:0035336

long-chain fatty-acyl-CoA metabolic process

15220348

TgeneFAR1

GO:0046474

glycerophospholipid biosynthetic process

20071337


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVLUADTCGA-38-4630-01AFLYWCH1chr16

2990093

+FAR1chr11

13749103

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000253928ENST00000354817FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
5CDS-intronENST00000253928ENST00000527202FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
5CDS-intronENST00000253928ENST00000532502FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
Frame-shiftENST00000399667ENST00000354817FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
5CDS-intronENST00000399667ENST00000527202FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
5CDS-intronENST00000399667ENST00000532502FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
Frame-shiftENST00000416288ENST00000354817FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
5CDS-intronENST00000416288ENST00000527202FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
5CDS-intronENST00000416288ENST00000532502FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
3UTR-3CDSENST00000570752ENST00000354817FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
3UTR-intronENST00000570752ENST00000527202FLYWCH1chr16

2990093

+FAR1chr11

13749103

+
3UTR-intronENST00000570752ENST00000532502FLYWCH1chr16

2990093

+FAR1chr11

13749103

+

Top

FusionProtFeatures for FLYWCH1_FAR1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FLYWCH1

Q4VC44

FAR1

Q8WVX9

Catalyzes the reduction of saturated and unsaturated C16or C18 fatty acyl-CoA to fatty alcohols (PubMed:15220348,PubMed:24108123). It plays an essential role in the production ofether lipids/plasmalogens which synthesis requires fatty alcohols(PubMed:20071337, PubMed:24108123). In parallel, it is alsorequired for wax monoesters production since fatty alcohols alsoconstitute a substrate for their synthesis (By similarity).{ECO:0000250|UniProtKB:Q922J9, ECO:0000269|PubMed:15220348,ECO:0000269|PubMed:20071337, ECO:0000269|PubMed:24108123}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for FLYWCH1_FAR1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for FLYWCH1_FAR1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
FLYWCH1SETDB1, ELAVL1, BRCA1, HTATSF1, KIF11, NFATC1FAR1C20orf24, SLC2A4, CUL3, CUL5, ATXN1, IQCB1, PEX14, CLN3, CCDC8, EGFR, CYLD


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for FLYWCH1_FAR1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for FLYWCH1_FAR1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneFAR1C4015344PEROXISOMAL FATTY ACYL-CoA REDUCTASE 1 DISORDER1ORPHANET;UNIPROT