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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 12944

FusionGeneSummary for FARP1_SIAE

check button Fusion gene summary
Fusion gene informationFusion gene name: FARP1_SIAE
Fusion gene ID: 12944
HgeneTgene
Gene symbol

FARP1

SIAE

Gene ID

10160

54414

Gene nameFERM, ARH/RhoGEF and pleckstrin domain protein 1sialic acid acetylesterase
SynonymsCDEP|FARP1-IT1|PLEKHC2|PPP1R75AIS6|CSE-C|CSEC|LSE|YSG2
Cytomap

13q32.2

11q24.2

Type of geneprotein-codingprotein-coding
DescriptionFERM, ARHGEF and pleckstrin domain-containing protein 1FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)FERM, RhoGEF and pleckstrin domain-containing protein 1PH domain-containing family C member 2chondrocyte-derived ezrin-lisialate O-acetylesteraseH-Lsecytosolic sialic acid 9-O-acetylesterase homologsialic acid-specific acetylesterase II
Modification date2018051920180519
UniProtAcc

Q9Y4F1

Q9HAT2

Ensembl transtripts involved in fusion geneENST00000595437, ENST00000376586, 
ENST00000319562, ENST00000376581, 
ENST00000593990, 
ENST00000263593, 
ENST00000545756, ENST00000525730, 
Fusion gene scores* DoF score14 X 11 X 7=107832 X 5 X 12=1920
# samples 1336
** MAII scorelog2(13/1078*10)=-3.05177364972405
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(36/1920*10)=-2.41503749927884
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FARP1 [Title/Abstract] AND SIAE [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneFARP1

GO:0010923

negative regulation of phosphatase activity

19389623

TgeneSIAE

GO:0005975

carbohydrate metabolic process

23308225


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-E2-A154-01AFARP1chr13

99102023

+SIAEchr11

124543777

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000595437ENST00000263593FARP1chr13

99102023

+SIAEchr11

124543777

-
5CDS-intronENST00000595437ENST00000545756FARP1chr13

99102023

+SIAEchr11

124543777

-
5CDS-intronENST00000595437ENST00000525730FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-3CDSENST00000376586ENST00000263593FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-intronENST00000376586ENST00000545756FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-intronENST00000376586ENST00000525730FARP1chr13

99102023

+SIAEchr11

124543777

-
In-frameENST00000319562ENST00000263593FARP1chr13

99102023

+SIAEchr11

124543777

-
5CDS-intronENST00000319562ENST00000545756FARP1chr13

99102023

+SIAEchr11

124543777

-
5CDS-intronENST00000319562ENST00000525730FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-3CDSENST00000376581ENST00000263593FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-intronENST00000376581ENST00000545756FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-intronENST00000376581ENST00000525730FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-3CDSENST00000593990ENST00000263593FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-intronENST00000593990ENST00000545756FARP1chr13

99102023

+SIAEchr11

124543777

-
intron-intronENST00000593990ENST00000525730FARP1chr13

99102023

+SIAEchr11

124543777

-

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FusionProtFeatures for FARP1_SIAE


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FARP1

Q9Y4F1

SIAE

Q9HAT2

Functions as guanine nucleotide exchange factor forRAC1. May play a role in semaphorin signaling. Plays a role in theassembly and disassembly of dendritic filopodia, the formation ofdendritic spines, regulation of dendrite length and ultimately theformation of synapses (By similarity). {ECO:0000250}. Catalyzes the removal of O-acetyl ester groups fromposition 9 of the parent sialic acid, N-acetylneuraminic acid.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for FARP1_SIAE


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_FARP1_ENST00000319562_chr13_99102023_+_SIAE_ENST00000263593_chr11_124543777_-_1530aa
MGEIEQRPTPGSRLGAPENSGISTLERGQKPPPTPSGKLVSIKIQMLDDTQEAFEVPQRAPGKVLLDAVCNHLNLVEGDYFGLEFPDHKK
ITVWLDLLKPIVKQIRRPKHVVVKFVVKFFPPDHTQLQEELTRYLFALQVKQDLAQGRLTCNDTSAALLISHIVQSEIGDFDEALDREHL
AKNKYIPQQDALEDKIVEFHHNHIGQTPAESDFQLLEIARRLEMYGIRLHPAKDREGTKINLAVANTGILVFQGFTKINAFNWAKVRKLS
FKRKRFLIKLRPDANSAYQDTLEFLMASRDFCKSFWKICVEHHAFFRLFEEPKPKPKPVLFSRGSSFRFSGRTQKQVLDYVKEGGHKKVQ
FERKHSKIHSIRSLASQPTELNSEVLEQSQQSTSLTFGEGAESPGGQSCRRGKEPKVSAGEPGSHPSPAPRRSPAGNKQADGAASAPTEE
EEEVVKDRTQQSKPQPPQPSTGSLTGSPHLSELSVNSQGGVAPANVTLSPNLSPDTKQASPLISPLLNDQACPRTDDEDEGRRKRFPTDK
AYFIAKEVSTTERTYLKDLEVITSWFQSTVSKEDAMPEALKSLIFPNFEPLHKFHTNFLKEIEQRLALWEGRSNAQIRDYQRIGDVMLKN
IQGMKHLAAHLWKHSEALEALENGIKSSRRLENFCRDFELQKVCYLPLNTFLLRPLHRLMHYKQVLERLCKHHPPSHADFRDCRAALAEI
TEMVAQLHGTMIKMENFQKLHELKKDLIGIDNLVVPGREFIRLGSLSKLSGKGLQQRMFFLFNDVLLYTSRGLTASNQFKVHGQLPLYGM
TIEESEDEWGVPHCLTLRGQRQSIIVAASSRSEMEKWVEDIQMAIDLAEKSSSPAPEFLASSPPDNKSPDEATAADQESEDDLSASRTSL
ERQAPHRGNTMVHVCWHRNTSVSMVDFSIAVENQLSGNLLRKFKNSNGWQKLWVVFTNFCLFFYKSHQDNHPLASLPLLGYSLTIPSESE
NIQKDYVFKLHFKSHVYYFRAESEYTFERWMEVIRSATSSASRPHVLSHKESLVYXWPDTLVSAVAAFLEDVSFLLYXXSLVKLTPVXKS
KTWLPSSSPVSTAAFFNPDLSASEXTALPPPVLASAGGAVLXLVPVLKHCHYESAKXHLPSTLPLKNSTHTSVQHKTGQVFFFLKKVLSF
IIFTYWLLHFTKWTSRCLFVCLQYTQCSLKQMRSFSDFIFFFSLSTFVIIGSXXDSLLXLISNLQHTAFHCGVSRSPENTCSQPTSWCKL
TKSFXVVTLSNRSRVVFCXAKPRSSAIPGLSPSCEWCTQWEDNKPWCFAVCLCHKHENPCVIDQHHLWYVPXXAFSEPAGCRALXNHGTX
SPAPVVIPISSCNCGLKLRILXXYISCLSSKTFPFLYSFPPGMGXCQSDCTGNTVSSGFGPYSGNVCLFSMVMGWLPFPWFSXALSNESL
KQAEARANSTPFFPAPRTIAPAHLRTRNAPSLWSSDWCSWKQTATCKRTKSLPCVNHLPYKMYQTVSSTNKGNKNTSRHNPAYXCFKAKQ


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_FARP1_ENST00000319562_chr13_99102023_+_SIAE_ENST00000263593_chr11_124543777_-_4590nt
ATGGGAGAAATAGAGCAGAGGCCGACCCCAGGATCACGACTGGGGGCCCCGGAAAATTCGGGGATCAGTACCTTGGAACGTGGACAGAAG
CCGCCCCCAACACCTTCAGGAAAACTCGTGTCCATCAAAATCCAGATGCTGGATGACACCCAGGAGGCATTTGAAGTTCCACAAAGAGCT
CCTGGGAAGGTGCTGCTGGATGCAGTTTGCAACCACCTCAACCTCGTGGAAGGTGACTATTTTGGCCTCGAGTTTCCTGATCACAAAAAG
ATCACGGTGTGGCTGGATCTCCTAAAACCCATTGTGAAACAGATTAGAAGGCCAAAGCACGTTGTTGTTAAGTTTGTGGTGAAATTCTTT
CCGCCTGACCACACACAACTCCAAGAAGAACTCACAAGGTACCTGTTCGCGCTGCAGGTGAAGCAGGACTTGGCTCAAGGCAGGTTGACG
TGTAATGACACCAGCGCAGCTCTCTTGATTTCACACATTGTGCAATCTGAGATTGGGGATTTTGATGAAGCCTTGGACAGAGAGCACTTA
GCAAAAAATAAATACATACCTCAGCAAGACGCACTAGAGGACAAAATCGTGGAATTTCACCATAACCACATTGGACAAACACCAGCAGAA
TCAGATTTCCAGCTCCTAGAGATTGCCCGTCGGCTAGAGATGTATGGAATCCGGTTGCACCCGGCCAAGGACAGGGAAGGCACGAAGATC
AATCTGGCCGTTGCCAACACGGGAATTCTAGTGTTTCAGGGTTTCACTAAGATCAATGCCTTCAACTGGGCCAAGGTGCGGAAGCTGAGC
TTCAAGAGGAAGCGCTTTCTCATCAAGCTCCGGCCAGATGCCAATAGTGCGTACCAGGATACCTTGGAATTCCTGATGGCCAGTCGGGAT
TTCTGCAAGTCCTTCTGGAAAATCTGTGTTGAACATCATGCCTTCTTTAGACTTTTTGAAGAGCCCAAACCAAAGCCCAAGCCCGTCCTC
TTTAGCCGGGGGTCATCATTTCGGTTCAGTGGTCGGACTCAGAAGCAGGTTCTCGACTATGTTAAAGAAGGAGGACATAAGAAGGTGCAG
TTTGAAAGGAAGCACAGCAAGATTCATTCTATCCGGAGCCTTGCTTCACAGCCTACAGAACTGAATTCGGAAGTGCTGGAGCAGTCTCAG
CAGAGCACCAGCCTTACATTTGGAGAAGGTGCCGAATCTCCAGGGGGCCAGAGCTGCCGGCGAGGAAAGGAACCGAAGGTTTCCGCCGGG
GAGCCGGGGTCGCACCCGAGCCCTGCGCCGAGGAGAAGCCCCGCGGGTAACAAGCAGGCGGACGGAGCCGCCTCGGCGCCCACGGAGGAA
GAGGAGGAGGTCGTTAAGGATAGGACCCAGCAGAGTAAACCTCAGCCCCCGCAGCCAAGCACAGGCTCCCTGACTGGCAGTCCTCACCTT
TCCGAGCTGTCTGTGAACTCGCAGGGGGGAGTGGCCCCTGCCAACGTGACCTTGTCTCCCAACCTGAGCCCCGACACCAAGCAGGCCTCT
CCCTTGATCAGCCCGCTGCTGAATGACCAGGCCTGCCCCCGGACGGACGATGAGGATGAGGGCCGGAGGAAGAGATTCCCAACTGATAAA
GCGTACTTCATAGCTAAGGAAGTGTCTACCACCGAGCGAACATATCTGAAGGATCTCGAAGTTATCACTTCGTGGTTTCAGAGCACAGTG
AGCAAAGAGGACGCCATGCCGGAAGCACTGAAAAGTCTCATATTCCCGAATTTTGAACCTTTGCACAAATTTCATACTAATTTTCTCAAG
GAAATTGAGCAACGACTTGCCCTGTGGGAAGGCCGCTCAAATGCCCAAATCAGAGATTACCAAAGAATCGGCGATGTCATGCTGAAGAAC
ATTCAGGGCATGAAGCACCTGGCGGCTCACCTGTGGAAGCACAGCGAGGCCTTGGAGGCCCTGGAGAATGGAATCAAGAGCTCCCGGCGG
CTGGAGAACTTCTGCAGAGACTTTGAGCTGCAGAAGGTGTGTTACCTACCGCTCAACACCTTCCTCCTGCGGCCACTGCACCGGCTCATG
CACTACAAGCAGGTCCTGGAGCGGCTGTGCAAACACCACCCGCCGAGCCACGCCGACTTCAGGGACTGCCGAGCCGCTTTGGCAGAGATC
ACGGAGATGGTGGCACAGCTCCACGGTACGATGATCAAGATGGAGAATTTCCAGAAGCTGCACGAACTCAAGAAAGATTTGATTGGCATT
GACAATCTTGTGGTTCCGGGAAGGGAGTTCATCCGTCTGGGCAGCCTCAGCAAGCTCTCGGGGAAGGGGCTCCAGCAGCGCATGTTCTTC
CTGTTCAACGACGTCCTGCTATACACGAGCCGGGGGCTGACGGCCTCCAATCAGTTTAAAGTCCACGGGCAGCTCCCGCTCTATGGCATG
ACGATTGAGGAGAGCGAAGACGAGTGGGGGGTGCCCCACTGCCTGACCCTCCGGGGCCAGCGGCAGTCCATCATCGTGGCCGCCAGTTCT
CGGTCCGAGATGGAGAAGTGGGTTGAGGACATCCAGATGGCCATTGACCTGGCGGAGAAGAGCAGCAGCCCCGCCCCTGAGTTCCTGGCC
AGCAGCCCCCCTGACAACAAGTCCCCTGATGAAGCCACCGCGGCTGACCAGGAGTCAGAGGATGACCTGAGCGCCTCGCGCACATCGCTG
GAGCGCCAGGCCCCGCACCGCGGCAACACAATGGTGCACGTGTGCTGGCACCGCAACACCAGCGTCTCCATGGTGGACTTCAGCATCGCA
GTGGAGAATCAGTTGTCTGGAAACCTGCTGAGGAAATTCAAAAACAGCAACGGGTGGCAGAAGCTGTGGGTGGTGTTCACAAACTTCTGC
CTGTTCTTCTACAAATCACACCAGGACAATCATCCCCTTGCCAGCCTGCCTCTGCTCGGCTACTCGCTCACCATCCCCTCTGAGTCCGAG
AACATCCAGAAAGACTACGTGTTCAAGCTGCACTTCAAGTCCCACGTCTACTACTTCAGGGCGGAAAGCGAGTACACGTTCGAAAGGTGG
ATGGAAGTGATCCGCAGTGCCACCAGCTCTGCCTCGCGACCCCACGTGTTGAGTCACAAAGAGTCTCTTGTGTATTGATGGCCGGACACA
CTCGTTTCCGCAGTGGCTGCTTTCCTGGAAGACGTTTCCTTTCTTCTGTATTAATGAAGCCTGGTAAAATTAACACCTGTCTGAAAATCA
AAAACATGGCTTCCCAGCAGCTCTCCTGTCTCCACAGCCGCGTTTTTTAACCCCGACCTCTCAGCGTCTGAATGAACAGCGCTCCCACCT
CCAGTCCTGGCATCCGCTGGGGGCGCTGTTCTTTAGCTAGTGCCAGTATTAAAACATTGTCATTACGAGAGTGCCAAATGACATCTTCCC
TCCACCCTGCCCCTGAAAAACAGTACACACACATCCGTTCAACACAAGACAGGGCAAGTGTTTTTCTTCCTAAAAAAAGTTCTTTCTTTT
ATTATTTTCACCTATTGGCTGCTGCATTTTACGAAGTGGACTTCCCGGTGTTTGTTTGTTTGTTTGCAATACACTCAGTGCAGCCTTAAG
CAAATGAGATCATTTTCAGATTTCATTTTTTTTTTCAGTCTTTCTACTTTTGTAATAATAGGAAGTTAGTAGGACTCACTTCTCTGATTA
ATAAGCAATTTGCAGCACACAGCGTTCCACTGCGGGGTTTCACGCTCACCTGAAAACACCTGTTCCCAACCTACTTCTTGGTGCAAGTTG
ACCAAATCGTTTTAAGTGGTAACTCTTTCCAACCGTAGCAGGGTTGTTTTCTGTTAAGCAAAGCCGAGATCCAGTGCAATACCTGGACTG
TCACCGTCCTGTGAGTGGTGTACACAATGGGAAGATAATAAGCCGTGGTGTTTTGCTGTCTGTCTGTGTCACAAGCATGAAAACCCGTGT
GTCATTGATCAGCACCATTTGTGGTATGTTCCGTGATGAGCGTTTAGTGAGCCTGCTGGCTGCAGAGCACTATGAAATCATGGTACGTAG
TCCCCGGCACCTGTCGTTATTCCTATATCCTCCTGCAACTGTGGTTTGAAACTGCGCATTCTCTAGTAGTATATATCGTGCCTGTCTTCA
AAAACATTTCCCTTTTTATACTCATTCCCCCCAGGCATGGGGTAGTGTCAGTCGGACTGCACAGGGAACACGGTTTCCAGTGGCTTTGGC
CCCTACTCGGGAAACGTCTGCCTGTTCTCGATGGTGATGGGGTGGCTGCCATTCCCTTGGTTTTCCTAAGCCCTTTCTAACGAGAGTCTC
AAACAAGCGGAGGCGAGGGCCAATTCAACCCCATTCTTTCCAGCGCCCCGCACCATAGCACCTGCCCACCTGAGAACCAGGAACGCACCC
TCTCTGTGGAGCTCTGACTGGTGTAGCTGGAAACAAACAGCAACTTGCAAACGGACGAAGAGCCTGCCGTGTGTTAATCATTTGCCTTAC
AAGATGTACCAGACGGTTTCCAGTACTAACAAAGGGAATAAAAATACCTCACGCCACAATCCAGCATATTGATGTTTTAAGGCAAAACAA


* Fusion transcript sequences (Full-length transcript).
>In-frame_FARP1_ENST00000319562_chr13_99102023_+_SIAE_ENST00000263593_chr11_124543777_-_10438nt
GCGACCCGGAGCCCGCTCCCCACCCACCCCGCCTGCTCCGCCCTCCCCTCCGCCCCGCGCCACCTTTGATGGCTCGGACCTCAGCCGGCC
ACCGCCAGCCCTGCTCGCGCGCCCGCGCCGCCGCCGCCCGCGGGTATTAATAGCCGGCGCCGCCGCGCCCTCGGCCGCCGGGGGCTTGGG
AGCCGCCGATCCCGGAGCCCGAGCCGGGAGAGGGAGCCGCCGCAGCCGCCGGCGCTGTGGAGATATTCTCTAAGCCGCTTTCATCATGGG
AGAAATAGAGCAGAGGCCGACCCCAGGATCACGACTGGGGGCCCCGGAAAATTCGGGGATCAGTACCTTGGAACGTGGACAGAAGCCGCC
CCCAACACCTTCAGGAAAACTCGTGTCCATCAAAATCCAGATGCTGGATGACACCCAGGAGGCATTTGAAGTTCCACAAAGAGCTCCTGG
GAAGGTGCTGCTGGATGCAGTTTGCAACCACCTCAACCTCGTGGAAGGTGACTATTTTGGCCTCGAGTTTCCTGATCACAAAAAGATCAC
GGTGTGGCTGGATCTCCTAAAACCCATTGTGAAACAGATTAGAAGGCCAAAGCACGTTGTTGTTAAGTTTGTGGTGAAATTCTTTCCGCC
TGACCACACACAACTCCAAGAAGAACTCACAAGGTACCTGTTCGCGCTGCAGGTGAAGCAGGACTTGGCTCAAGGCAGGTTGACGTGTAA
TGACACCAGCGCAGCTCTCTTGATTTCACACATTGTGCAATCTGAGATTGGGGATTTTGATGAAGCCTTGGACAGAGAGCACTTAGCAAA
AAATAAATACATACCTCAGCAAGACGCACTAGAGGACAAAATCGTGGAATTTCACCATAACCACATTGGACAAACACCAGCAGAATCAGA
TTTCCAGCTCCTAGAGATTGCCCGTCGGCTAGAGATGTATGGAATCCGGTTGCACCCGGCCAAGGACAGGGAAGGCACGAAGATCAATCT
GGCCGTTGCCAACACGGGAATTCTAGTGTTTCAGGGTTTCACTAAGATCAATGCCTTCAACTGGGCCAAGGTGCGGAAGCTGAGCTTCAA
GAGGAAGCGCTTTCTCATCAAGCTCCGGCCAGATGCCAATAGTGCGTACCAGGATACCTTGGAATTCCTGATGGCCAGTCGGGATTTCTG
CAAGTCCTTCTGGAAAATCTGTGTTGAACATCATGCCTTCTTTAGACTTTTTGAAGAGCCCAAACCAAAGCCCAAGCCCGTCCTCTTTAG
CCGGGGGTCATCATTTCGGTTCAGTGGTCGGACTCAGAAGCAGGTTCTCGACTATGTTAAAGAAGGAGGACATAAGAAGGTGCAGTTTGA
AAGGAAGCACAGCAAGATTCATTCTATCCGGAGCCTTGCTTCACAGCCTACAGAACTGAATTCGGAAGTGCTGGAGCAGTCTCAGCAGAG
CACCAGCCTTACATTTGGAGAAGGTGCCGAATCTCCAGGGGGCCAGAGCTGCCGGCGAGGAAAGGAACCGAAGGTTTCCGCCGGGGAGCC
GGGGTCGCACCCGAGCCCTGCGCCGAGGAGAAGCCCCGCGGGTAACAAGCAGGCGGACGGAGCCGCCTCGGCGCCCACGGAGGAAGAGGA
GGAGGTCGTTAAGGATAGGACCCAGCAGAGTAAACCTCAGCCCCCGCAGCCAAGCACAGGCTCCCTGACTGGCAGTCCTCACCTTTCCGA
GCTGTCTGTGAACTCGCAGGGGGGAGTGGCCCCTGCCAACGTGACCTTGTCTCCCAACCTGAGCCCCGACACCAAGCAGGCCTCTCCCTT
GATCAGCCCGCTGCTGAATGACCAGGCCTGCCCCCGGACGGACGATGAGGATGAGGGCCGGAGGAAGAGATTCCCAACTGATAAAGCGTA
CTTCATAGCTAAGGAAGTGTCTACCACCGAGCGAACATATCTGAAGGATCTCGAAGTTATCACTTCGTGGTTTCAGAGCACAGTGAGCAA
AGAGGACGCCATGCCGGAAGCACTGAAAAGTCTCATATTCCCGAATTTTGAACCTTTGCACAAATTTCATACTAATTTTCTCAAGGAAAT
TGAGCAACGACTTGCCCTGTGGGAAGGCCGCTCAAATGCCCAAATCAGAGATTACCAAAGAATCGGCGATGTCATGCTGAAGAACATTCA
GGGCATGAAGCACCTGGCGGCTCACCTGTGGAAGCACAGCGAGGCCTTGGAGGCCCTGGAGAATGGAATCAAGAGCTCCCGGCGGCTGGA
GAACTTCTGCAGAGACTTTGAGCTGCAGAAGGTGTGTTACCTACCGCTCAACACCTTCCTCCTGCGGCCACTGCACCGGCTCATGCACTA
CAAGCAGGTCCTGGAGCGGCTGTGCAAACACCACCCGCCGAGCCACGCCGACTTCAGGGACTGCCGAGCCGCTTTGGCAGAGATCACGGA
GATGGTGGCACAGCTCCACGGTACGATGATCAAGATGGAGAATTTCCAGAAGCTGCACGAACTCAAGAAAGATTTGATTGGCATTGACAA
TCTTGTGGTTCCGGGAAGGGAGTTCATCCGTCTGGGCAGCCTCAGCAAGCTCTCGGGGAAGGGGCTCCAGCAGCGCATGTTCTTCCTGTT
CAACGACGTCCTGCTATACACGAGCCGGGGGCTGACGGCCTCCAATCAGTTTAAAGTCCACGGGCAGCTCCCGCTCTATGGCATGACGAT
TGAGGAGAGCGAAGACGAGTGGGGGGTGCCCCACTGCCTGACCCTCCGGGGCCAGCGGCAGTCCATCATCGTGGCCGCCAGTTCTCGGTC
CGAGATGGAGAAGTGGGTTGAGGACATCCAGATGGCCATTGACCTGGCGGAGAAGAGCAGCAGCCCCGCCCCTGAGTTCCTGGCCAGCAG
CCCCCCTGACAACAAGTCCCCTGATGAAGCCACCGCGGCTGACCAGGAGTCAGAGGATGACCTGAGCGCCTCGCGCACATCGCTGGAGCG
CCAGGCCCCGCACCGCGGCAACACAATGGTGCACGTGTGCTGGCACCGCAACACCAGCGTCTCCATGGTGGACTTCAGCATCGCAGTGGA
GAATCAGTTGTCTGGAAACCTGCTGAGGAAATTCAAAAACAGCAACGGGTGGCAGAAGCTGTGGGTGGTGTTCACAAACTTCTGCCTGTT
CTTCTACAAATCACACCAGGACAATCATCCCCTTGCCAGCCTGCCTCTGCTCGGCTACTCGCTCACCATCCCCTCTGAGTCCGAGAACAT
CCAGAAAGACTACGTGTTCAAGCTGCACTTCAAGTCCCACGTCTACTACTTCAGGGCGGAAAGCGAGTACACGTTCGAAAGGTGGATGGA
AGTGATCCGCAGTGCCACCAGCTCTGCCTCGCGACCCCACGTGTTGAGTCACAAAGAGTCTCTTGTGTATTGATGGCCGGACACACTCGT
TTCCGCAGTGGCTGCTTTCCTGGAAGACGTTTCCTTTCTTCTGTATTAATGAAGCCTGGTAAAATTAACACCTGTCTGAAAATCAAAAAC
ATGGCTTCCCAGCAGCTCTCCTGTCTCCACAGCCGCGTTTTTTAACCCCGACCTCTCAGCGTCTGAATGAACAGCGCTCCCACCTCCAGT
CCTGGCATCCGCTGGGGGCGCTGTTCTTTAGCTAGTGCCAGTATTAAAACATTGTCATTACGAGAGTGCCAAATGACATCTTCCCTCCAC
CCTGCCCCTGAAAAACAGTACACACACATCCGTTCAACACAAGACAGGGCAAGTGTTTTTCTTCCTAAAAAAAGTTCTTTCTTTTATTAT
TTTCACCTATTGGCTGCTGCATTTTACGAAGTGGACTTCCCGGTGTTTGTTTGTTTGTTTGCAATACACTCAGTGCAGCCTTAAGCAAAT
GAGATCATTTTCAGATTTCATTTTTTTTTTCAGTCTTTCTACTTTTGTAATAATAGGAAGTTAGTAGGACTCACTTCTCTGATTAATAAG
CAATTTGCAGCACACAGCGTTCCACTGCGGGGTTTCACGCTCACCTGAAAACACCTGTTCCCAACCTACTTCTTGGTGCAAGTTGACCAA
ATCGTTTTAAGTGGTAACTCTTTCCAACCGTAGCAGGGTTGTTTTCTGTTAAGCAAAGCCGAGATCCAGTGCAATACCTGGACTGTCACC
GTCCTGTGAGTGGTGTACACAATGGGAAGATAATAAGCCGTGGTGTTTTGCTGTCTGTCTGTGTCACAAGCATGAAAACCCGTGTGTCAT
TGATCAGCACCATTTGTGGTATGTTCCGTGATGAGCGTTTAGTGAGCCTGCTGGCTGCAGAGCACTATGAAATCATGGTACGTAGTCCCC
GGCACCTGTCGTTATTCCTATATCCTCCTGCAACTGTGGTTTGAAACTGCGCATTCTCTAGTAGTATATATCGTGCCTGTCTTCAAAAAC
ATTTCCCTTTTTATACTCATTCCCCCCAGGCATGGGGTAGTGTCAGTCGGACTGCACAGGGAACACGGTTTCCAGTGGCTTTGGCCCCTA
CTCGGGAAACGTCTGCCTGTTCTCGATGGTGATGGGGTGGCTGCCATTCCCTTGGTTTTCCTAAGCCCTTTCTAACGAGAGTCTCAAACA
AGCGGAGGCGAGGGCCAATTCAACCCCATTCTTTCCAGCGCCCCGCACCATAGCACCTGCCCACCTGAGAACCAGGAACGCACCCTCTCT
GTGGAGCTCTGACTGGTGTAGCTGGAAACAAACAGCAACTTGCAAACGGACGAAGAGCCTGCCGTGTGTTAATCATTTGCCTTACAAGAT
GTACCAGACGGTTTCCAGTACTAACAAAGGGAATAAAAATACCTCACGCCACAATCCAGCATATTGATGTTTTAAGGCAAAACAAAAAAA
AAAAAAAAAACTACGGCGGCCGAGAAGGGGCGAGTACAGCCCAGTCCTGAGGTCGCGGGAGGCTGCGAGGACTGCAAAAGGGTGGAGTCG
GCCTCGCCCCCGCCCAGGCCCCGCCCCTGCCGGGAACCCACTTTCCCAGTCCTAGGCGGCGGTCAGATCCTTGCAAGCATGGTCGCGCCG
GGGCTTGTACTCGGGCTGGTGCTGCCATTAATCCTGTGGGCCGACAGAAGTGCAGGTATTGGTTTTCGCTTTGCTTCATACATCAATAAT
GATATGGTGCTGCAGAAGGAGCCTGCTGGGGCAGTGATATGGGGCTTCGGTACACCTGGAGCCACAGTGACCGTGACCCTGCGCCAAGGT
CAGGAAACCATCATGAAGAAAGTGACCAGTGTGAAAGCTCACTCTGATACGTGGATGGTGGTACTGGATCCTATGAAGCCTGGAGGACCT
TTCGAAGTGATGGCACAACAGACTTTGGAGAAAATAAACTTCACCCTGAGAGTTCATGACGTCCTGTTTGGAGATGTCTGGCTCTGTAGT
GGGCAGAGTAACATGCAGATGACTGTGTTACAGATATTTAATGCTACAAGGGAGTTGTCTAACACTGCGGCATATCAGTCTGTCCGCATC
CTCTCTGTCTCTCCCATTCAAGCAGAGCAGGAGCTGGAGGACCTTGTTGCGGTTGACTTGCAGTGGTCTAAGCCCACCTCAGAAAACTTA
GGCCATGGATATTTCAAGTACATGTCAGCAGTGTGCTGGCTCTTTGGACGTCACCTTTATGACACTCTGCAGTATCCCATCGGGCTGATC
GCCTCCAGCTGGGGCGGGACACCCATTGAAGCCTGGTCATCTGGACGGTCACTGAAAGCCTGTGGGGTCCCTAAACAAGGGTCCATTCCA
TACGATTCTGTAACTGGTCCCAGTAAGCACTCTGTTCTCTGGAATGCCATGATCCATCCACTGTGCAATATGACTCTGAAAGGGGTAGTA
TGGTACCAGGGGGAGTCCAATATAAATTATAACACGGATCTGTACAATTGCACATTCCCTGCACTCATCGAAGACTGGCGTGAAACCTTC
CACCGTGGTTCCCAGGGGCAGACGGAGCGTTTCTTCCCATTTGGACTTGTCCAGTTATCTTCAGATTTGTCTAAGAAGAGCTCAGACGAT
GGATTTCCCCAGATCCGTTGGCATCAAACAGCAGACTTCGGCTATGTCCCCAACCCAAAGATGCCCAATACTTTCATGGCTGTAGCTATG
GATCTCTGTGATAGAGACTCGCCTTTTGGCAGCATCCACCCTCGAGATAAACAGACTGTGGCTTATCGGCTGCATTTGGGGGCCCGTGCT
CTGGCTTATGGTGAGAAGAATTTGACCTTTGAAGGACCACTGCCTGAGAAGATAGAACTCTTGGCTCACAAGGGGCTGCTCAATCTCACA
TATTACCAGCAAATCCAGGTGCAGAAAAAGGACAACAAGATATTTGAGATCTCCTGTTGCAGTGACCATCGATGCAAGTGGCTTCCAGCT
TCTATGAACACCGTCTCCACCCAGTCCCTGACCCTGGCGATCGATTCTTGTCATGGCACTGTGGTTGCTCTCCGCTATGCTTGGACCACG
TGGCCTTGTGAATATAAGCAGTGTCCCCTATACCACCCCAGTAGTGCCCTGCCAGCCCCTCCCTTCATTGCTTTCATTACAGACCAGGGT
CCTGGACATCAGAGCAATGTTGCTAAATGACTGTTTCAGTATGATCAGAACTTAGATATAAGGATGGGTCCTTCAGATTTTAGCATTTAG
GAGTTTCAATAATAACCATTGCTTTTAAAGGAAATTAATAGAAAGCCTCATTGAATGGCTTTCAGCTAGCACATGGCTGTTTCTATATTC
TGATGAGCCCAGGCTTATAGGTAACTTGAAATGCTTGCTTTTTGTTCCCTAGTTGGTCTAAGGGTCTGTATTGGACTAATTCTGAACTAC
AGACAAATTGGACCTCAATGTCATTTACTTCCCTCATATTAATGGGAGTGAAATGTCTAATACTTTTGCCCCTTTTTATCCAGAGTTGTG
GGAATCTCAGGATTGGAAGAGATTTTAAAGGCCACATAGGCCAGCTAGTGTTCATGTGTTCTTTATAAAATTTCTCCCATCCAAGTACTA
ACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGATGAGATCAGGCGCGTTCAGGGTGATATGGCCGTAGACGTCTTTACAAAATTCCTG
ACAGGTGGTTACTGAATCTCTCTATGAACTTTCCATTCAAAACTTTCCAAGTTTTTCCTTATGTGGAACCGAAATCTTTCTTTCTCCCGT
GAAACTTTACTACTATCAGATAATTGAAGACAGATCTCTTTGTATTCTCTTCAAGCCCAAACCAATTCTGTTCCTTCAATCTAAATAGTG
GTAATATGAATGTTTAAGAAATGAAATAAGAAACATGTGCAGGCACTTTGGAAGGTGCTAAGTGACTGCCCTAAGGAATGAAAAGCAAGG
GCCAGGTGGGAGTAGCCCAGCGAAGGCACTTGGGCTGCCAGGAACAGGAGGCGTGGGAAACTCTGGCTTAGGAAAACATGAACACAGGGG
CAACAGAGGCAAACTGTTGTTCGAGTTAAATATAAATCTCAGGCTCTTTAAAGGTAAAAGGTTTAAGGATAATCCATTTGGAAGAAGAAA
AGAGTGAGGCTGAAAGTAAAGCCACATGACAAGCATATAAAAAAAAATGCAGATGATACAAATATGAAAGAGGCCTTCAGTGTTTGTTTA
TTAAGAATCTTAATGCAGTTTACTGATGGATTAAAAACAGCTAACATTGTCTGAAAATTATGTTACCTATAAGAAGTTGGAAATAAATAA
AAGCATAATCACTAGTGATGTGTATGTATTTATATCCACTTGCAAACTGTCCTTGAAGCATGTGAAAAGGAGTAAGAATACTATCTATGG
GTAGCTTTCCTCCCCTTAATGTGAAAAATGAGAACTAAAGCAAAAAGCATCACTCACTGTACATATACAATGTATTTTACGTAGTGTAAA
AAATATGGTTTAGATAGTGAATATATTAATGAAATCATATGTAAATTTATTTTTAGTGGCTGAATAATTTAAAACATTATGTGGAATTCA
CTATGTTTCCCCCAATTTAGGAACTTTTTACTGTGTGAAAATGAAATTTATAATACTCTGTAGGGTGAATGATGGTTTTTGCTTTAGTTC
TACCCCTCTGTAGAGTTCCAAGGGGTTCTGGTGTAGCTCCAAACAGCAGGAATAACTTTGTCAGTGCCAAGATTTTATTTAGTTAAAAAA
CAAAAAATCTACACACTTTACAAGGAACGTTGGCTCCCCTGAGGACTTCCTAGCATTCAACTCGTTCAGTTAACCCCTATTGCCCATGCT
TTGACCTCTCATGCATCTGGCCCCATAGAAACCATGAACCTTGTAACAGATTGATGCCTGAGAAAAAGTCAATCTACCCGTCCACTCCTC
CACTCCCAATACACATACCCCCATGGGCTGTTCTAATTCGGGGGCAGCCAGAGGTAGCCAAGAACTCTAAGTCCAGATTCCTTTCACCTC
CAGGAACCTAGAGTACATAGTGTGAAAAATACGGTTCAGGCAATGATTATGTTAATGACGCCATGCACATTCATTTTTAGTGGCTGAGTA
ATTTAAAACATGATGTGGGAATTCACTGCATTTCCCCAAATGTAAGAACTTTTTAGTTTTAAAATGAAATTTATAGTCACTGTAGAAAAT
TTGGACACTAAAGTATAAGCAAGTAAAAATCACCCCCAAATTCATCATTCAGAGAAACACTATTTTGCTGAACCATTCACTTGACTTGAG
TTATATAATTTTATACAGTACATATTATTTTGTAATCTGTGTTTTTGACTTACTTACTTTACCAAAATAATTTTCTTATGTAAATAATAG
AATATAGATTTAGAGTGTTTCAGTTTGTGGAAGCCTCATTTTATTTAACCAATTTCCTATTAATGGACATATAGATTTTTAACAATTTTC
TACTATTAAAATAATACTGTAATGAATATCACATGCAAACATCATACCACACTCGTCCAGTTATTTCTTAGGGTTCTTAACATGGAAGAG
GATAAATATATATTTAAAATTTAGATATCTACAGCTTAACCCTCCCAAAGGATTAAACAACTTACATTCTCACCAAGGTAGTCCTTTTTT
TGCCCTCACCCTCATTGACACTGGATGTTGTCAAATTTAAAAAAAATCCTTAACAATCTGATAGATGAAAAGATAGTTTAAGTATACTAA
GGCAGTGTTTTTCAAGGTGTTTTTGTTTTTGTTTTTGAGTTGGAGTTTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGGTCTCGGC
TCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCGTGCCACCACGCCT
GGCTAATTTTTTGTATTTTTATTAGAGACCGACTTAGCCAGGATGGTCTCGATCTCCTGACCTCTTGATCCACCCGCCTCAGCCTCCCAA
AGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCTTTTCAAGTTTCTTAAATCCATGATCCATAGTAAAAACATTTTACACATATCT
TCATACAAGTATATGTATATGTGGTATACGTACACACTATAGTTGTATATGCATTATAGCTGAAAAACCAGTTCAACCTTTCTACATGTG
GTATGTTCCAAAAATTTTAAATGTCTTTCTAAAATGAGGCTCTTTTAATACGGGTATTACTCAGGCTGTAATAGTGGGAAAATATTTGTT
ATATGATAAAAGCAGCATATATCATTTCTGTGTAAATGCCAGTATGCTCAAGCCATTTATGCAGAGAAAAAAAGAAAAACACTGCATTAA
CATTTTAAGCAGTCCCCTTCCCGATTTGCTATTATACAAAGTTTGTTTCTTTTACATTGTAAAGTGTATACAACTTATAAAAAGACTATA
CTCAAAATCATAAAATACCAGTTAACTTAGCTTCTCAGTTTACAGTGGCCAGTGTGGTGTGCTCTAAACACTGCTGCCTGATCCCTCCCT
CTGCTGGTCAGATTTATTACTATAAAGTACCAATCCCATTTGTGTTGTCCTCAATTGGCAATTATGAATGGCAGTGCATTAACCATTCAA
TTCTCACCACTCCATCCCCATTCTTCTACTTCTGGGTCCTTTTGTCCCTCCCTTTCCAGACAGCCCTTGGTAACCTGCTGCTGGGTAACT
AAGGCATCCCACAGGTAGTGTTGAGGTGTTAGGTGATAGAGTAAACCTCTACCTTAATGCTATTAACAGGGTCCAAAAATCCAGTTGCAT
GGAACATGGAGTTATATTATTACATGGCTAATGAAAAGACAGGACTAAGTCTGTTATAGAGTATGGGACTAACCCCCAATTATATGTGAA


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FusionGenePPI for FARP1_SIAE


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
FARP1ELAVL1, NTRK1, CAPZA2, MYO1C, PDGFRA, AKAP1, SYNPO, GAR1, GEMIN7, BRD2, PTPRG, SNRPN, SDC1, SDC2, DCAF8, TRIM25SIAEFBXO6, PTPRK, CPE, HLA-B, ENTPD6, NPTX1, CNTNAP3, MANEAL, OAF, TMEM30A, MR1, COCH, FAM162A, GPR98, GFPT2, MOXD1, LNPEP, PLXNB2, TCTN1, POC1A, NDST2, SGSH, TENM3, ERAP1, MANBA, ITGA8, TMEM2, LAMB2, FASTKD3, CHSY3, GDF11, DDX47, TMEM131, ARSK, ARSB, MBTPS1, COL18A1, MANEA, NAAA, RPP38, NRP2, PTGFRN, PLTP, KIAA1161, DCBLD2, SEPN1, GALNT7, TGFBR3, MAN2B2, TMEM132A, GALNS, NAGLU, CTSF, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for FARP1_SIAE


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for FARP1_SIAE


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneFARP1C0236969Substance-Related Disorders1CTD_human
TgeneSIAEC3150797AUTOIMMUNE DISEASE, SUSCEPTIBILITY TO, 61UNIPROT