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Fusion gene ID: 12944 |
FusionGeneSummary for FARP1_SIAE |
Fusion gene summary |
Fusion gene information | Fusion gene name: FARP1_SIAE | Fusion gene ID: 12944 | Hgene | Tgene | Gene symbol | FARP1 | SIAE | Gene ID | 10160 | 54414 |
Gene name | FERM, ARH/RhoGEF and pleckstrin domain protein 1 | sialic acid acetylesterase | |
Synonyms | CDEP|FARP1-IT1|PLEKHC2|PPP1R75 | AIS6|CSE-C|CSEC|LSE|YSG2 | |
Cytomap | 13q32.2 | 11q24.2 | |
Type of gene | protein-coding | protein-coding | |
Description | FERM, ARHGEF and pleckstrin domain-containing protein 1FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)FERM, RhoGEF and pleckstrin domain-containing protein 1PH domain-containing family C member 2chondrocyte-derived ezrin-li | sialate O-acetylesteraseH-Lsecytosolic sialic acid 9-O-acetylesterase homologsialic acid-specific acetylesterase II | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q9Y4F1 | Q9HAT2 | |
Ensembl transtripts involved in fusion gene | ENST00000595437, ENST00000376586, ENST00000319562, ENST00000376581, ENST00000593990, | ENST00000263593, ENST00000545756, ENST00000525730, | |
Fusion gene scores | * DoF score | 14 X 11 X 7=1078 | 32 X 5 X 12=1920 |
# samples | 13 | 36 | |
** MAII score | log2(13/1078*10)=-3.05177364972405 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(36/1920*10)=-2.41503749927884 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: FARP1 [Title/Abstract] AND SIAE [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | FARP1 | GO:0010923 | negative regulation of phosphatase activity | 19389623 |
Tgene | SIAE | GO:0005975 | carbohydrate metabolic process | 23308225 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-E2-A154-01A | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000595437 | ENST00000263593 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
5CDS-intron | ENST00000595437 | ENST00000545756 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
5CDS-intron | ENST00000595437 | ENST00000525730 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-3CDS | ENST00000376586 | ENST00000263593 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-intron | ENST00000376586 | ENST00000545756 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-intron | ENST00000376586 | ENST00000525730 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
In-frame | ENST00000319562 | ENST00000263593 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
5CDS-intron | ENST00000319562 | ENST00000545756 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
5CDS-intron | ENST00000319562 | ENST00000525730 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-3CDS | ENST00000376581 | ENST00000263593 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-intron | ENST00000376581 | ENST00000545756 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-intron | ENST00000376581 | ENST00000525730 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-3CDS | ENST00000593990 | ENST00000263593 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-intron | ENST00000593990 | ENST00000545756 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
intron-intron | ENST00000593990 | ENST00000525730 | FARP1 | chr13 | 99102023 | + | SIAE | chr11 | 124543777 | - |
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FusionProtFeatures for FARP1_SIAE |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
FARP1 | SIAE |
Functions as guanine nucleotide exchange factor forRAC1. May play a role in semaphorin signaling. Plays a role in theassembly and disassembly of dendritic filopodia, the formation ofdendritic spines, regulation of dendrite length and ultimately theformation of synapses (By similarity). {ECO:0000250}. | Catalyzes the removal of O-acetyl ester groups fromposition 9 of the parent sialic acid, N-acetylneuraminic acid. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for FARP1_SIAE |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_FARP1_ENST00000319562_chr13_99102023_+_SIAE_ENST00000263593_chr11_124543777_-_1530aa MGEIEQRPTPGSRLGAPENSGISTLERGQKPPPTPSGKLVSIKIQMLDDTQEAFEVPQRAPGKVLLDAVCNHLNLVEGDYFGLEFPDHKK ITVWLDLLKPIVKQIRRPKHVVVKFVVKFFPPDHTQLQEELTRYLFALQVKQDLAQGRLTCNDTSAALLISHIVQSEIGDFDEALDREHL AKNKYIPQQDALEDKIVEFHHNHIGQTPAESDFQLLEIARRLEMYGIRLHPAKDREGTKINLAVANTGILVFQGFTKINAFNWAKVRKLS FKRKRFLIKLRPDANSAYQDTLEFLMASRDFCKSFWKICVEHHAFFRLFEEPKPKPKPVLFSRGSSFRFSGRTQKQVLDYVKEGGHKKVQ FERKHSKIHSIRSLASQPTELNSEVLEQSQQSTSLTFGEGAESPGGQSCRRGKEPKVSAGEPGSHPSPAPRRSPAGNKQADGAASAPTEE EEEVVKDRTQQSKPQPPQPSTGSLTGSPHLSELSVNSQGGVAPANVTLSPNLSPDTKQASPLISPLLNDQACPRTDDEDEGRRKRFPTDK AYFIAKEVSTTERTYLKDLEVITSWFQSTVSKEDAMPEALKSLIFPNFEPLHKFHTNFLKEIEQRLALWEGRSNAQIRDYQRIGDVMLKN IQGMKHLAAHLWKHSEALEALENGIKSSRRLENFCRDFELQKVCYLPLNTFLLRPLHRLMHYKQVLERLCKHHPPSHADFRDCRAALAEI TEMVAQLHGTMIKMENFQKLHELKKDLIGIDNLVVPGREFIRLGSLSKLSGKGLQQRMFFLFNDVLLYTSRGLTASNQFKVHGQLPLYGM TIEESEDEWGVPHCLTLRGQRQSIIVAASSRSEMEKWVEDIQMAIDLAEKSSSPAPEFLASSPPDNKSPDEATAADQESEDDLSASRTSL ERQAPHRGNTMVHVCWHRNTSVSMVDFSIAVENQLSGNLLRKFKNSNGWQKLWVVFTNFCLFFYKSHQDNHPLASLPLLGYSLTIPSESE NIQKDYVFKLHFKSHVYYFRAESEYTFERWMEVIRSATSSASRPHVLSHKESLVYXWPDTLVSAVAAFLEDVSFLLYXXSLVKLTPVXKS KTWLPSSSPVSTAAFFNPDLSASEXTALPPPVLASAGGAVLXLVPVLKHCHYESAKXHLPSTLPLKNSTHTSVQHKTGQVFFFLKKVLSF IIFTYWLLHFTKWTSRCLFVCLQYTQCSLKQMRSFSDFIFFFSLSTFVIIGSXXDSLLXLISNLQHTAFHCGVSRSPENTCSQPTSWCKL TKSFXVVTLSNRSRVVFCXAKPRSSAIPGLSPSCEWCTQWEDNKPWCFAVCLCHKHENPCVIDQHHLWYVPXXAFSEPAGCRALXNHGTX SPAPVVIPISSCNCGLKLRILXXYISCLSSKTFPFLYSFPPGMGXCQSDCTGNTVSSGFGPYSGNVCLFSMVMGWLPFPWFSXALSNESL KQAEARANSTPFFPAPRTIAPAHLRTRNAPSLWSSDWCSWKQTATCKRTKSLPCVNHLPYKMYQTVSSTNKGNKNTSRHNPAYXCFKAKQ |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_FARP1_ENST00000319562_chr13_99102023_+_SIAE_ENST00000263593_chr11_124543777_-_4590nt ATGGGAGAAATAGAGCAGAGGCCGACCCCAGGATCACGACTGGGGGCCCCGGAAAATTCGGGGATCAGTACCTTGGAACGTGGACAGAAG CCGCCCCCAACACCTTCAGGAAAACTCGTGTCCATCAAAATCCAGATGCTGGATGACACCCAGGAGGCATTTGAAGTTCCACAAAGAGCT CCTGGGAAGGTGCTGCTGGATGCAGTTTGCAACCACCTCAACCTCGTGGAAGGTGACTATTTTGGCCTCGAGTTTCCTGATCACAAAAAG ATCACGGTGTGGCTGGATCTCCTAAAACCCATTGTGAAACAGATTAGAAGGCCAAAGCACGTTGTTGTTAAGTTTGTGGTGAAATTCTTT CCGCCTGACCACACACAACTCCAAGAAGAACTCACAAGGTACCTGTTCGCGCTGCAGGTGAAGCAGGACTTGGCTCAAGGCAGGTTGACG TGTAATGACACCAGCGCAGCTCTCTTGATTTCACACATTGTGCAATCTGAGATTGGGGATTTTGATGAAGCCTTGGACAGAGAGCACTTA GCAAAAAATAAATACATACCTCAGCAAGACGCACTAGAGGACAAAATCGTGGAATTTCACCATAACCACATTGGACAAACACCAGCAGAA TCAGATTTCCAGCTCCTAGAGATTGCCCGTCGGCTAGAGATGTATGGAATCCGGTTGCACCCGGCCAAGGACAGGGAAGGCACGAAGATC AATCTGGCCGTTGCCAACACGGGAATTCTAGTGTTTCAGGGTTTCACTAAGATCAATGCCTTCAACTGGGCCAAGGTGCGGAAGCTGAGC TTCAAGAGGAAGCGCTTTCTCATCAAGCTCCGGCCAGATGCCAATAGTGCGTACCAGGATACCTTGGAATTCCTGATGGCCAGTCGGGAT TTCTGCAAGTCCTTCTGGAAAATCTGTGTTGAACATCATGCCTTCTTTAGACTTTTTGAAGAGCCCAAACCAAAGCCCAAGCCCGTCCTC TTTAGCCGGGGGTCATCATTTCGGTTCAGTGGTCGGACTCAGAAGCAGGTTCTCGACTATGTTAAAGAAGGAGGACATAAGAAGGTGCAG TTTGAAAGGAAGCACAGCAAGATTCATTCTATCCGGAGCCTTGCTTCACAGCCTACAGAACTGAATTCGGAAGTGCTGGAGCAGTCTCAG CAGAGCACCAGCCTTACATTTGGAGAAGGTGCCGAATCTCCAGGGGGCCAGAGCTGCCGGCGAGGAAAGGAACCGAAGGTTTCCGCCGGG GAGCCGGGGTCGCACCCGAGCCCTGCGCCGAGGAGAAGCCCCGCGGGTAACAAGCAGGCGGACGGAGCCGCCTCGGCGCCCACGGAGGAA GAGGAGGAGGTCGTTAAGGATAGGACCCAGCAGAGTAAACCTCAGCCCCCGCAGCCAAGCACAGGCTCCCTGACTGGCAGTCCTCACCTT TCCGAGCTGTCTGTGAACTCGCAGGGGGGAGTGGCCCCTGCCAACGTGACCTTGTCTCCCAACCTGAGCCCCGACACCAAGCAGGCCTCT CCCTTGATCAGCCCGCTGCTGAATGACCAGGCCTGCCCCCGGACGGACGATGAGGATGAGGGCCGGAGGAAGAGATTCCCAACTGATAAA GCGTACTTCATAGCTAAGGAAGTGTCTACCACCGAGCGAACATATCTGAAGGATCTCGAAGTTATCACTTCGTGGTTTCAGAGCACAGTG AGCAAAGAGGACGCCATGCCGGAAGCACTGAAAAGTCTCATATTCCCGAATTTTGAACCTTTGCACAAATTTCATACTAATTTTCTCAAG GAAATTGAGCAACGACTTGCCCTGTGGGAAGGCCGCTCAAATGCCCAAATCAGAGATTACCAAAGAATCGGCGATGTCATGCTGAAGAAC ATTCAGGGCATGAAGCACCTGGCGGCTCACCTGTGGAAGCACAGCGAGGCCTTGGAGGCCCTGGAGAATGGAATCAAGAGCTCCCGGCGG CTGGAGAACTTCTGCAGAGACTTTGAGCTGCAGAAGGTGTGTTACCTACCGCTCAACACCTTCCTCCTGCGGCCACTGCACCGGCTCATG CACTACAAGCAGGTCCTGGAGCGGCTGTGCAAACACCACCCGCCGAGCCACGCCGACTTCAGGGACTGCCGAGCCGCTTTGGCAGAGATC ACGGAGATGGTGGCACAGCTCCACGGTACGATGATCAAGATGGAGAATTTCCAGAAGCTGCACGAACTCAAGAAAGATTTGATTGGCATT GACAATCTTGTGGTTCCGGGAAGGGAGTTCATCCGTCTGGGCAGCCTCAGCAAGCTCTCGGGGAAGGGGCTCCAGCAGCGCATGTTCTTC CTGTTCAACGACGTCCTGCTATACACGAGCCGGGGGCTGACGGCCTCCAATCAGTTTAAAGTCCACGGGCAGCTCCCGCTCTATGGCATG ACGATTGAGGAGAGCGAAGACGAGTGGGGGGTGCCCCACTGCCTGACCCTCCGGGGCCAGCGGCAGTCCATCATCGTGGCCGCCAGTTCT CGGTCCGAGATGGAGAAGTGGGTTGAGGACATCCAGATGGCCATTGACCTGGCGGAGAAGAGCAGCAGCCCCGCCCCTGAGTTCCTGGCC AGCAGCCCCCCTGACAACAAGTCCCCTGATGAAGCCACCGCGGCTGACCAGGAGTCAGAGGATGACCTGAGCGCCTCGCGCACATCGCTG GAGCGCCAGGCCCCGCACCGCGGCAACACAATGGTGCACGTGTGCTGGCACCGCAACACCAGCGTCTCCATGGTGGACTTCAGCATCGCA GTGGAGAATCAGTTGTCTGGAAACCTGCTGAGGAAATTCAAAAACAGCAACGGGTGGCAGAAGCTGTGGGTGGTGTTCACAAACTTCTGC CTGTTCTTCTACAAATCACACCAGGACAATCATCCCCTTGCCAGCCTGCCTCTGCTCGGCTACTCGCTCACCATCCCCTCTGAGTCCGAG AACATCCAGAAAGACTACGTGTTCAAGCTGCACTTCAAGTCCCACGTCTACTACTTCAGGGCGGAAAGCGAGTACACGTTCGAAAGGTGG ATGGAAGTGATCCGCAGTGCCACCAGCTCTGCCTCGCGACCCCACGTGTTGAGTCACAAAGAGTCTCTTGTGTATTGATGGCCGGACACA CTCGTTTCCGCAGTGGCTGCTTTCCTGGAAGACGTTTCCTTTCTTCTGTATTAATGAAGCCTGGTAAAATTAACACCTGTCTGAAAATCA AAAACATGGCTTCCCAGCAGCTCTCCTGTCTCCACAGCCGCGTTTTTTAACCCCGACCTCTCAGCGTCTGAATGAACAGCGCTCCCACCT CCAGTCCTGGCATCCGCTGGGGGCGCTGTTCTTTAGCTAGTGCCAGTATTAAAACATTGTCATTACGAGAGTGCCAAATGACATCTTCCC TCCACCCTGCCCCTGAAAAACAGTACACACACATCCGTTCAACACAAGACAGGGCAAGTGTTTTTCTTCCTAAAAAAAGTTCTTTCTTTT ATTATTTTCACCTATTGGCTGCTGCATTTTACGAAGTGGACTTCCCGGTGTTTGTTTGTTTGTTTGCAATACACTCAGTGCAGCCTTAAG CAAATGAGATCATTTTCAGATTTCATTTTTTTTTTCAGTCTTTCTACTTTTGTAATAATAGGAAGTTAGTAGGACTCACTTCTCTGATTA ATAAGCAATTTGCAGCACACAGCGTTCCACTGCGGGGTTTCACGCTCACCTGAAAACACCTGTTCCCAACCTACTTCTTGGTGCAAGTTG ACCAAATCGTTTTAAGTGGTAACTCTTTCCAACCGTAGCAGGGTTGTTTTCTGTTAAGCAAAGCCGAGATCCAGTGCAATACCTGGACTG TCACCGTCCTGTGAGTGGTGTACACAATGGGAAGATAATAAGCCGTGGTGTTTTGCTGTCTGTCTGTGTCACAAGCATGAAAACCCGTGT GTCATTGATCAGCACCATTTGTGGTATGTTCCGTGATGAGCGTTTAGTGAGCCTGCTGGCTGCAGAGCACTATGAAATCATGGTACGTAG TCCCCGGCACCTGTCGTTATTCCTATATCCTCCTGCAACTGTGGTTTGAAACTGCGCATTCTCTAGTAGTATATATCGTGCCTGTCTTCA AAAACATTTCCCTTTTTATACTCATTCCCCCCAGGCATGGGGTAGTGTCAGTCGGACTGCACAGGGAACACGGTTTCCAGTGGCTTTGGC CCCTACTCGGGAAACGTCTGCCTGTTCTCGATGGTGATGGGGTGGCTGCCATTCCCTTGGTTTTCCTAAGCCCTTTCTAACGAGAGTCTC AAACAAGCGGAGGCGAGGGCCAATTCAACCCCATTCTTTCCAGCGCCCCGCACCATAGCACCTGCCCACCTGAGAACCAGGAACGCACCC TCTCTGTGGAGCTCTGACTGGTGTAGCTGGAAACAAACAGCAACTTGCAAACGGACGAAGAGCCTGCCGTGTGTTAATCATTTGCCTTAC AAGATGTACCAGACGGTTTCCAGTACTAACAAAGGGAATAAAAATACCTCACGCCACAATCCAGCATATTGATGTTTTAAGGCAAAACAA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_FARP1_ENST00000319562_chr13_99102023_+_SIAE_ENST00000263593_chr11_124543777_-_10438nt GCGACCCGGAGCCCGCTCCCCACCCACCCCGCCTGCTCCGCCCTCCCCTCCGCCCCGCGCCACCTTTGATGGCTCGGACCTCAGCCGGCC ACCGCCAGCCCTGCTCGCGCGCCCGCGCCGCCGCCGCCCGCGGGTATTAATAGCCGGCGCCGCCGCGCCCTCGGCCGCCGGGGGCTTGGG AGCCGCCGATCCCGGAGCCCGAGCCGGGAGAGGGAGCCGCCGCAGCCGCCGGCGCTGTGGAGATATTCTCTAAGCCGCTTTCATCATGGG AGAAATAGAGCAGAGGCCGACCCCAGGATCACGACTGGGGGCCCCGGAAAATTCGGGGATCAGTACCTTGGAACGTGGACAGAAGCCGCC CCCAACACCTTCAGGAAAACTCGTGTCCATCAAAATCCAGATGCTGGATGACACCCAGGAGGCATTTGAAGTTCCACAAAGAGCTCCTGG GAAGGTGCTGCTGGATGCAGTTTGCAACCACCTCAACCTCGTGGAAGGTGACTATTTTGGCCTCGAGTTTCCTGATCACAAAAAGATCAC GGTGTGGCTGGATCTCCTAAAACCCATTGTGAAACAGATTAGAAGGCCAAAGCACGTTGTTGTTAAGTTTGTGGTGAAATTCTTTCCGCC TGACCACACACAACTCCAAGAAGAACTCACAAGGTACCTGTTCGCGCTGCAGGTGAAGCAGGACTTGGCTCAAGGCAGGTTGACGTGTAA TGACACCAGCGCAGCTCTCTTGATTTCACACATTGTGCAATCTGAGATTGGGGATTTTGATGAAGCCTTGGACAGAGAGCACTTAGCAAA AAATAAATACATACCTCAGCAAGACGCACTAGAGGACAAAATCGTGGAATTTCACCATAACCACATTGGACAAACACCAGCAGAATCAGA TTTCCAGCTCCTAGAGATTGCCCGTCGGCTAGAGATGTATGGAATCCGGTTGCACCCGGCCAAGGACAGGGAAGGCACGAAGATCAATCT GGCCGTTGCCAACACGGGAATTCTAGTGTTTCAGGGTTTCACTAAGATCAATGCCTTCAACTGGGCCAAGGTGCGGAAGCTGAGCTTCAA GAGGAAGCGCTTTCTCATCAAGCTCCGGCCAGATGCCAATAGTGCGTACCAGGATACCTTGGAATTCCTGATGGCCAGTCGGGATTTCTG CAAGTCCTTCTGGAAAATCTGTGTTGAACATCATGCCTTCTTTAGACTTTTTGAAGAGCCCAAACCAAAGCCCAAGCCCGTCCTCTTTAG CCGGGGGTCATCATTTCGGTTCAGTGGTCGGACTCAGAAGCAGGTTCTCGACTATGTTAAAGAAGGAGGACATAAGAAGGTGCAGTTTGA AAGGAAGCACAGCAAGATTCATTCTATCCGGAGCCTTGCTTCACAGCCTACAGAACTGAATTCGGAAGTGCTGGAGCAGTCTCAGCAGAG CACCAGCCTTACATTTGGAGAAGGTGCCGAATCTCCAGGGGGCCAGAGCTGCCGGCGAGGAAAGGAACCGAAGGTTTCCGCCGGGGAGCC GGGGTCGCACCCGAGCCCTGCGCCGAGGAGAAGCCCCGCGGGTAACAAGCAGGCGGACGGAGCCGCCTCGGCGCCCACGGAGGAAGAGGA GGAGGTCGTTAAGGATAGGACCCAGCAGAGTAAACCTCAGCCCCCGCAGCCAAGCACAGGCTCCCTGACTGGCAGTCCTCACCTTTCCGA GCTGTCTGTGAACTCGCAGGGGGGAGTGGCCCCTGCCAACGTGACCTTGTCTCCCAACCTGAGCCCCGACACCAAGCAGGCCTCTCCCTT GATCAGCCCGCTGCTGAATGACCAGGCCTGCCCCCGGACGGACGATGAGGATGAGGGCCGGAGGAAGAGATTCCCAACTGATAAAGCGTA CTTCATAGCTAAGGAAGTGTCTACCACCGAGCGAACATATCTGAAGGATCTCGAAGTTATCACTTCGTGGTTTCAGAGCACAGTGAGCAA AGAGGACGCCATGCCGGAAGCACTGAAAAGTCTCATATTCCCGAATTTTGAACCTTTGCACAAATTTCATACTAATTTTCTCAAGGAAAT TGAGCAACGACTTGCCCTGTGGGAAGGCCGCTCAAATGCCCAAATCAGAGATTACCAAAGAATCGGCGATGTCATGCTGAAGAACATTCA GGGCATGAAGCACCTGGCGGCTCACCTGTGGAAGCACAGCGAGGCCTTGGAGGCCCTGGAGAATGGAATCAAGAGCTCCCGGCGGCTGGA GAACTTCTGCAGAGACTTTGAGCTGCAGAAGGTGTGTTACCTACCGCTCAACACCTTCCTCCTGCGGCCACTGCACCGGCTCATGCACTA CAAGCAGGTCCTGGAGCGGCTGTGCAAACACCACCCGCCGAGCCACGCCGACTTCAGGGACTGCCGAGCCGCTTTGGCAGAGATCACGGA GATGGTGGCACAGCTCCACGGTACGATGATCAAGATGGAGAATTTCCAGAAGCTGCACGAACTCAAGAAAGATTTGATTGGCATTGACAA TCTTGTGGTTCCGGGAAGGGAGTTCATCCGTCTGGGCAGCCTCAGCAAGCTCTCGGGGAAGGGGCTCCAGCAGCGCATGTTCTTCCTGTT CAACGACGTCCTGCTATACACGAGCCGGGGGCTGACGGCCTCCAATCAGTTTAAAGTCCACGGGCAGCTCCCGCTCTATGGCATGACGAT TGAGGAGAGCGAAGACGAGTGGGGGGTGCCCCACTGCCTGACCCTCCGGGGCCAGCGGCAGTCCATCATCGTGGCCGCCAGTTCTCGGTC CGAGATGGAGAAGTGGGTTGAGGACATCCAGATGGCCATTGACCTGGCGGAGAAGAGCAGCAGCCCCGCCCCTGAGTTCCTGGCCAGCAG CCCCCCTGACAACAAGTCCCCTGATGAAGCCACCGCGGCTGACCAGGAGTCAGAGGATGACCTGAGCGCCTCGCGCACATCGCTGGAGCG CCAGGCCCCGCACCGCGGCAACACAATGGTGCACGTGTGCTGGCACCGCAACACCAGCGTCTCCATGGTGGACTTCAGCATCGCAGTGGA GAATCAGTTGTCTGGAAACCTGCTGAGGAAATTCAAAAACAGCAACGGGTGGCAGAAGCTGTGGGTGGTGTTCACAAACTTCTGCCTGTT CTTCTACAAATCACACCAGGACAATCATCCCCTTGCCAGCCTGCCTCTGCTCGGCTACTCGCTCACCATCCCCTCTGAGTCCGAGAACAT CCAGAAAGACTACGTGTTCAAGCTGCACTTCAAGTCCCACGTCTACTACTTCAGGGCGGAAAGCGAGTACACGTTCGAAAGGTGGATGGA AGTGATCCGCAGTGCCACCAGCTCTGCCTCGCGACCCCACGTGTTGAGTCACAAAGAGTCTCTTGTGTATTGATGGCCGGACACACTCGT TTCCGCAGTGGCTGCTTTCCTGGAAGACGTTTCCTTTCTTCTGTATTAATGAAGCCTGGTAAAATTAACACCTGTCTGAAAATCAAAAAC ATGGCTTCCCAGCAGCTCTCCTGTCTCCACAGCCGCGTTTTTTAACCCCGACCTCTCAGCGTCTGAATGAACAGCGCTCCCACCTCCAGT CCTGGCATCCGCTGGGGGCGCTGTTCTTTAGCTAGTGCCAGTATTAAAACATTGTCATTACGAGAGTGCCAAATGACATCTTCCCTCCAC CCTGCCCCTGAAAAACAGTACACACACATCCGTTCAACACAAGACAGGGCAAGTGTTTTTCTTCCTAAAAAAAGTTCTTTCTTTTATTAT TTTCACCTATTGGCTGCTGCATTTTACGAAGTGGACTTCCCGGTGTTTGTTTGTTTGTTTGCAATACACTCAGTGCAGCCTTAAGCAAAT GAGATCATTTTCAGATTTCATTTTTTTTTTCAGTCTTTCTACTTTTGTAATAATAGGAAGTTAGTAGGACTCACTTCTCTGATTAATAAG CAATTTGCAGCACACAGCGTTCCACTGCGGGGTTTCACGCTCACCTGAAAACACCTGTTCCCAACCTACTTCTTGGTGCAAGTTGACCAA ATCGTTTTAAGTGGTAACTCTTTCCAACCGTAGCAGGGTTGTTTTCTGTTAAGCAAAGCCGAGATCCAGTGCAATACCTGGACTGTCACC GTCCTGTGAGTGGTGTACACAATGGGAAGATAATAAGCCGTGGTGTTTTGCTGTCTGTCTGTGTCACAAGCATGAAAACCCGTGTGTCAT TGATCAGCACCATTTGTGGTATGTTCCGTGATGAGCGTTTAGTGAGCCTGCTGGCTGCAGAGCACTATGAAATCATGGTACGTAGTCCCC GGCACCTGTCGTTATTCCTATATCCTCCTGCAACTGTGGTTTGAAACTGCGCATTCTCTAGTAGTATATATCGTGCCTGTCTTCAAAAAC ATTTCCCTTTTTATACTCATTCCCCCCAGGCATGGGGTAGTGTCAGTCGGACTGCACAGGGAACACGGTTTCCAGTGGCTTTGGCCCCTA CTCGGGAAACGTCTGCCTGTTCTCGATGGTGATGGGGTGGCTGCCATTCCCTTGGTTTTCCTAAGCCCTTTCTAACGAGAGTCTCAAACA AGCGGAGGCGAGGGCCAATTCAACCCCATTCTTTCCAGCGCCCCGCACCATAGCACCTGCCCACCTGAGAACCAGGAACGCACCCTCTCT GTGGAGCTCTGACTGGTGTAGCTGGAAACAAACAGCAACTTGCAAACGGACGAAGAGCCTGCCGTGTGTTAATCATTTGCCTTACAAGAT GTACCAGACGGTTTCCAGTACTAACAAAGGGAATAAAAATACCTCACGCCACAATCCAGCATATTGATGTTTTAAGGCAAAACAAAAAAA AAAAAAAAAACTACGGCGGCCGAGAAGGGGCGAGTACAGCCCAGTCCTGAGGTCGCGGGAGGCTGCGAGGACTGCAAAAGGGTGGAGTCG GCCTCGCCCCCGCCCAGGCCCCGCCCCTGCCGGGAACCCACTTTCCCAGTCCTAGGCGGCGGTCAGATCCTTGCAAGCATGGTCGCGCCG GGGCTTGTACTCGGGCTGGTGCTGCCATTAATCCTGTGGGCCGACAGAAGTGCAGGTATTGGTTTTCGCTTTGCTTCATACATCAATAAT GATATGGTGCTGCAGAAGGAGCCTGCTGGGGCAGTGATATGGGGCTTCGGTACACCTGGAGCCACAGTGACCGTGACCCTGCGCCAAGGT CAGGAAACCATCATGAAGAAAGTGACCAGTGTGAAAGCTCACTCTGATACGTGGATGGTGGTACTGGATCCTATGAAGCCTGGAGGACCT TTCGAAGTGATGGCACAACAGACTTTGGAGAAAATAAACTTCACCCTGAGAGTTCATGACGTCCTGTTTGGAGATGTCTGGCTCTGTAGT GGGCAGAGTAACATGCAGATGACTGTGTTACAGATATTTAATGCTACAAGGGAGTTGTCTAACACTGCGGCATATCAGTCTGTCCGCATC CTCTCTGTCTCTCCCATTCAAGCAGAGCAGGAGCTGGAGGACCTTGTTGCGGTTGACTTGCAGTGGTCTAAGCCCACCTCAGAAAACTTA GGCCATGGATATTTCAAGTACATGTCAGCAGTGTGCTGGCTCTTTGGACGTCACCTTTATGACACTCTGCAGTATCCCATCGGGCTGATC GCCTCCAGCTGGGGCGGGACACCCATTGAAGCCTGGTCATCTGGACGGTCACTGAAAGCCTGTGGGGTCCCTAAACAAGGGTCCATTCCA TACGATTCTGTAACTGGTCCCAGTAAGCACTCTGTTCTCTGGAATGCCATGATCCATCCACTGTGCAATATGACTCTGAAAGGGGTAGTA TGGTACCAGGGGGAGTCCAATATAAATTATAACACGGATCTGTACAATTGCACATTCCCTGCACTCATCGAAGACTGGCGTGAAACCTTC CACCGTGGTTCCCAGGGGCAGACGGAGCGTTTCTTCCCATTTGGACTTGTCCAGTTATCTTCAGATTTGTCTAAGAAGAGCTCAGACGAT GGATTTCCCCAGATCCGTTGGCATCAAACAGCAGACTTCGGCTATGTCCCCAACCCAAAGATGCCCAATACTTTCATGGCTGTAGCTATG GATCTCTGTGATAGAGACTCGCCTTTTGGCAGCATCCACCCTCGAGATAAACAGACTGTGGCTTATCGGCTGCATTTGGGGGCCCGTGCT CTGGCTTATGGTGAGAAGAATTTGACCTTTGAAGGACCACTGCCTGAGAAGATAGAACTCTTGGCTCACAAGGGGCTGCTCAATCTCACA TATTACCAGCAAATCCAGGTGCAGAAAAAGGACAACAAGATATTTGAGATCTCCTGTTGCAGTGACCATCGATGCAAGTGGCTTCCAGCT TCTATGAACACCGTCTCCACCCAGTCCCTGACCCTGGCGATCGATTCTTGTCATGGCACTGTGGTTGCTCTCCGCTATGCTTGGACCACG TGGCCTTGTGAATATAAGCAGTGTCCCCTATACCACCCCAGTAGTGCCCTGCCAGCCCCTCCCTTCATTGCTTTCATTACAGACCAGGGT CCTGGACATCAGAGCAATGTTGCTAAATGACTGTTTCAGTATGATCAGAACTTAGATATAAGGATGGGTCCTTCAGATTTTAGCATTTAG GAGTTTCAATAATAACCATTGCTTTTAAAGGAAATTAATAGAAAGCCTCATTGAATGGCTTTCAGCTAGCACATGGCTGTTTCTATATTC TGATGAGCCCAGGCTTATAGGTAACTTGAAATGCTTGCTTTTTGTTCCCTAGTTGGTCTAAGGGTCTGTATTGGACTAATTCTGAACTAC AGACAAATTGGACCTCAATGTCATTTACTTCCCTCATATTAATGGGAGTGAAATGTCTAATACTTTTGCCCCTTTTTATCCAGAGTTGTG GGAATCTCAGGATTGGAAGAGATTTTAAAGGCCACATAGGCCAGCTAGTGTTCATGTGTTCTTTATAAAATTTCTCCCATCCAAGTACTA ACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGATGAGATCAGGCGCGTTCAGGGTGATATGGCCGTAGACGTCTTTACAAAATTCCTG ACAGGTGGTTACTGAATCTCTCTATGAACTTTCCATTCAAAACTTTCCAAGTTTTTCCTTATGTGGAACCGAAATCTTTCTTTCTCCCGT GAAACTTTACTACTATCAGATAATTGAAGACAGATCTCTTTGTATTCTCTTCAAGCCCAAACCAATTCTGTTCCTTCAATCTAAATAGTG GTAATATGAATGTTTAAGAAATGAAATAAGAAACATGTGCAGGCACTTTGGAAGGTGCTAAGTGACTGCCCTAAGGAATGAAAAGCAAGG GCCAGGTGGGAGTAGCCCAGCGAAGGCACTTGGGCTGCCAGGAACAGGAGGCGTGGGAAACTCTGGCTTAGGAAAACATGAACACAGGGG CAACAGAGGCAAACTGTTGTTCGAGTTAAATATAAATCTCAGGCTCTTTAAAGGTAAAAGGTTTAAGGATAATCCATTTGGAAGAAGAAA AGAGTGAGGCTGAAAGTAAAGCCACATGACAAGCATATAAAAAAAAATGCAGATGATACAAATATGAAAGAGGCCTTCAGTGTTTGTTTA TTAAGAATCTTAATGCAGTTTACTGATGGATTAAAAACAGCTAACATTGTCTGAAAATTATGTTACCTATAAGAAGTTGGAAATAAATAA AAGCATAATCACTAGTGATGTGTATGTATTTATATCCACTTGCAAACTGTCCTTGAAGCATGTGAAAAGGAGTAAGAATACTATCTATGG GTAGCTTTCCTCCCCTTAATGTGAAAAATGAGAACTAAAGCAAAAAGCATCACTCACTGTACATATACAATGTATTTTACGTAGTGTAAA AAATATGGTTTAGATAGTGAATATATTAATGAAATCATATGTAAATTTATTTTTAGTGGCTGAATAATTTAAAACATTATGTGGAATTCA CTATGTTTCCCCCAATTTAGGAACTTTTTACTGTGTGAAAATGAAATTTATAATACTCTGTAGGGTGAATGATGGTTTTTGCTTTAGTTC TACCCCTCTGTAGAGTTCCAAGGGGTTCTGGTGTAGCTCCAAACAGCAGGAATAACTTTGTCAGTGCCAAGATTTTATTTAGTTAAAAAA CAAAAAATCTACACACTTTACAAGGAACGTTGGCTCCCCTGAGGACTTCCTAGCATTCAACTCGTTCAGTTAACCCCTATTGCCCATGCT TTGACCTCTCATGCATCTGGCCCCATAGAAACCATGAACCTTGTAACAGATTGATGCCTGAGAAAAAGTCAATCTACCCGTCCACTCCTC CACTCCCAATACACATACCCCCATGGGCTGTTCTAATTCGGGGGCAGCCAGAGGTAGCCAAGAACTCTAAGTCCAGATTCCTTTCACCTC CAGGAACCTAGAGTACATAGTGTGAAAAATACGGTTCAGGCAATGATTATGTTAATGACGCCATGCACATTCATTTTTAGTGGCTGAGTA ATTTAAAACATGATGTGGGAATTCACTGCATTTCCCCAAATGTAAGAACTTTTTAGTTTTAAAATGAAATTTATAGTCACTGTAGAAAAT TTGGACACTAAAGTATAAGCAAGTAAAAATCACCCCCAAATTCATCATTCAGAGAAACACTATTTTGCTGAACCATTCACTTGACTTGAG TTATATAATTTTATACAGTACATATTATTTTGTAATCTGTGTTTTTGACTTACTTACTTTACCAAAATAATTTTCTTATGTAAATAATAG AATATAGATTTAGAGTGTTTCAGTTTGTGGAAGCCTCATTTTATTTAACCAATTTCCTATTAATGGACATATAGATTTTTAACAATTTTC TACTATTAAAATAATACTGTAATGAATATCACATGCAAACATCATACCACACTCGTCCAGTTATTTCTTAGGGTTCTTAACATGGAAGAG GATAAATATATATTTAAAATTTAGATATCTACAGCTTAACCCTCCCAAAGGATTAAACAACTTACATTCTCACCAAGGTAGTCCTTTTTT TGCCCTCACCCTCATTGACACTGGATGTTGTCAAATTTAAAAAAAATCCTTAACAATCTGATAGATGAAAAGATAGTTTAAGTATACTAA GGCAGTGTTTTTCAAGGTGTTTTTGTTTTTGTTTTTGAGTTGGAGTTTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGGTCTCGGC TCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCGTGCCACCACGCCT GGCTAATTTTTTGTATTTTTATTAGAGACCGACTTAGCCAGGATGGTCTCGATCTCCTGACCTCTTGATCCACCCGCCTCAGCCTCCCAA AGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCTTTTCAAGTTTCTTAAATCCATGATCCATAGTAAAAACATTTTACACATATCT TCATACAAGTATATGTATATGTGGTATACGTACACACTATAGTTGTATATGCATTATAGCTGAAAAACCAGTTCAACCTTTCTACATGTG GTATGTTCCAAAAATTTTAAATGTCTTTCTAAAATGAGGCTCTTTTAATACGGGTATTACTCAGGCTGTAATAGTGGGAAAATATTTGTT ATATGATAAAAGCAGCATATATCATTTCTGTGTAAATGCCAGTATGCTCAAGCCATTTATGCAGAGAAAAAAAGAAAAACACTGCATTAA CATTTTAAGCAGTCCCCTTCCCGATTTGCTATTATACAAAGTTTGTTTCTTTTACATTGTAAAGTGTATACAACTTATAAAAAGACTATA CTCAAAATCATAAAATACCAGTTAACTTAGCTTCTCAGTTTACAGTGGCCAGTGTGGTGTGCTCTAAACACTGCTGCCTGATCCCTCCCT CTGCTGGTCAGATTTATTACTATAAAGTACCAATCCCATTTGTGTTGTCCTCAATTGGCAATTATGAATGGCAGTGCATTAACCATTCAA TTCTCACCACTCCATCCCCATTCTTCTACTTCTGGGTCCTTTTGTCCCTCCCTTTCCAGACAGCCCTTGGTAACCTGCTGCTGGGTAACT AAGGCATCCCACAGGTAGTGTTGAGGTGTTAGGTGATAGAGTAAACCTCTACCTTAATGCTATTAACAGGGTCCAAAAATCCAGTTGCAT GGAACATGGAGTTATATTATTACATGGCTAATGAAAAGACAGGACTAAGTCTGTTATAGAGTATGGGACTAACCCCCAATTATATGTGAA |
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FusionGenePPI for FARP1_SIAE |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
FARP1 | ELAVL1, NTRK1, CAPZA2, MYO1C, PDGFRA, AKAP1, SYNPO, GAR1, GEMIN7, BRD2, PTPRG, SNRPN, SDC1, SDC2, DCAF8, TRIM25 | SIAE | FBXO6, PTPRK, CPE, HLA-B, ENTPD6, NPTX1, CNTNAP3, MANEAL, OAF, TMEM30A, MR1, COCH, FAM162A, GPR98, GFPT2, MOXD1, LNPEP, PLXNB2, TCTN1, POC1A, NDST2, SGSH, TENM3, ERAP1, MANBA, ITGA8, TMEM2, LAMB2, FASTKD3, CHSY3, GDF11, DDX47, TMEM131, ARSK, ARSB, MBTPS1, COL18A1, MANEA, NAAA, RPP38, NRP2, PTGFRN, PLTP, KIAA1161, DCBLD2, SEPN1, GALNT7, TGFBR3, MAN2B2, TMEM132A, GALNS, NAGLU, CTSF, TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FARP1_SIAE |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FARP1_SIAE |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | FARP1 | C0236969 | Substance-Related Disorders | 1 | CTD_human |
Tgene | SIAE | C3150797 | AUTOIMMUNE DISEASE, SUSCEPTIBILITY TO, 6 | 1 | UNIPROT |