|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 12636 |
FusionGeneSummary for FAM168A_TMEM135 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: FAM168A_TMEM135 | Fusion gene ID: 12636 | Hgene | Tgene | Gene symbol | FAM168A | TMEM135 | Gene ID | 23201 | 65084 |
| Gene name | family with sequence similarity 168 member A | transmembrane protein 135 | |
| Synonyms | KIAA0280|TCRP1 | PMP52 | |
| Cytomap | 11q13.4 | 11q14.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein FAM168Atongue cancer chemotherapy resistance-associated protein 1 | transmembrane protein 135peroxisomal membrane protein 52 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q92567 | Q86UB9 | |
| Ensembl transtripts involved in fusion gene | ENST00000064778, ENST00000450446, ENST00000356467, | ENST00000340353, ENST00000532959, ENST00000305494, ENST00000535167, ENST00000355734, | |
| Fusion gene scores | * DoF score | 20 X 4 X 10=800 | 8 X 6 X 7=336 |
| # samples | 23 | 10 | |
| ** MAII score | log2(23/800*10)=-1.79836613883035 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/336*10)=-1.74846123300404 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: FAM168A [Title/Abstract] AND TMEM135 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | FAM168A | GO:1905053 | positive regulation of base-excision repair | 25260657 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUSC | TCGA-94-7557-01A | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-3CDS | ENST00000064778 | ENST00000340353 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-intron | ENST00000064778 | ENST00000532959 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-intron | ENST00000064778 | ENST00000305494 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-5UTR | ENST00000064778 | ENST00000535167 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-5UTR | ENST00000064778 | ENST00000355734 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-3CDS | ENST00000450446 | ENST00000340353 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-intron | ENST00000450446 | ENST00000532959 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-intron | ENST00000450446 | ENST00000305494 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-5UTR | ENST00000450446 | ENST00000535167 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-5UTR | ENST00000450446 | ENST00000355734 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-3CDS | ENST00000356467 | ENST00000340353 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-intron | ENST00000356467 | ENST00000532959 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-intron | ENST00000356467 | ENST00000305494 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-5UTR | ENST00000356467 | ENST00000535167 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
| 5UTR-5UTR | ENST00000356467 | ENST00000355734 | FAM168A | chr11 | 73308968 | - | TMEM135 | chr11 | 86778736 | + |
Top |
FusionProtFeatures for FAM168A_TMEM135 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| FAM168A | TMEM135 |
| In cancer context, protects cells from induced-DNAdamage and apoptosis. Acts, at least in part, throughPI3K/AKT/NFKB signaling pathway and by preventing POLBdegradation. Decreases POLB ubiquitation and stabilizes itsprotein levels. {ECO:0000269|PubMed:21334329,ECO:0000269|PubMed:21603883, ECO:0000269|PubMed:23251525,ECO:0000269|PubMed:25260657}. | Involved in mitochondrial metabolism by regulating thebalance between mitochondrial fusion and fission. May act as aregulator of mitochondrial fission that promotes DNM1L-dependentfission through activation of DNM1L. May be involved in peroxisomeorganization. {ECO:0000250|UniProtKB:Q5U4F4,ECO:0000250|UniProtKB:Q9CYV5}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for FAM168A_TMEM135 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for FAM168A_TMEM135 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| FAM168A | BAG3, RBFOX1, DAB1, SNRPC, UBE2V1, SF1, TAX1BP1, DAZAP2, CALCOCO2, TNIP1, RBPMS, R3HDM2, FAM168A, SS18L1, VPS37C, KLHL42, SMAP2, OTUB2, UBASH3B, C1orf94, OTULIN, NAF1, DTX2, PRR20A, MOV10, FBXO6, WWP2, EWSR1, FBXW5, MCM2, TRIM25 | TMEM135 | SMPD3 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for FAM168A_TMEM135 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for FAM168A_TMEM135 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | FAM168A | C0038356 | Stomach Neoplasms | 1 | CTD_human |
| Tgene | TMEM135 | C3714756 | Intellectual Disability | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|