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Fusion gene ID: 12423 |
FusionGeneSummary for FADS2_GDPD4 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: FADS2_GDPD4 | Fusion gene ID: 12423 | Hgene | Tgene | Gene symbol | FADS2 | GDPD4 | Gene ID | 9415 | 220032 |
| Gene name | fatty acid desaturase 2 | glycerophosphodiester phosphodiesterase domain containing 4 | |
| Synonyms | D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 | GDE6 | |
| Cytomap | 11q12.2 | 11q13.5 | |
| Type of gene | protein-coding | protein-coding | |
| Description | fatty acid desaturase 2acyl-CoA 6-desaturasedelta-6 fatty acid desaturasedelta-6-desaturaselinoleoyl-CoA desaturase (delta-6-desaturase)-like 2 | glycerophosphodiester phosphodiesterase domain-containing protein 4GDPD domain containing proteinglycerophosphodiester phosphodiesterase 6ugpQ | |
| Modification date | 20180519 | 20180329 | |
| UniProtAcc | O95864 | Q6W3E5 | |
| Ensembl transtripts involved in fusion gene | ENST00000257261, ENST00000522056, ENST00000278840, ENST00000521849, ENST00000574708, ENST00000522639, ENST00000517839, | ENST00000376217, ENST00000315938, ENST00000527489, | |
| Fusion gene scores | * DoF score | 3 X 3 X 3=27 | 9 X 4 X 2=72 |
| # samples | 3 | 8 | |
| ** MAII score | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(8/72*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: FADS2 [Title/Abstract] AND GDPD4 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | SKCM | TCGA-EB-A82B-01A | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000257261 | ENST00000376217 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000257261 | ENST00000315938 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-intron | ENST00000257261 | ENST00000527489 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000522056 | ENST00000376217 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000522056 | ENST00000315938 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-intron | ENST00000522056 | ENST00000527489 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000278840 | ENST00000376217 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000278840 | ENST00000315938 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-intron | ENST00000278840 | ENST00000527489 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000521849 | ENST00000376217 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000521849 | ENST00000315938 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-intron | ENST00000521849 | ENST00000527489 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| 5UTR-3CDS | ENST00000574708 | ENST00000376217 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| 5UTR-3CDS | ENST00000574708 | ENST00000315938 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| 5UTR-intron | ENST00000574708 | ENST00000527489 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000522639 | ENST00000376217 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000522639 | ENST00000315938 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-intron | ENST00000522639 | ENST00000527489 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000517839 | ENST00000376217 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-3CDS | ENST00000517839 | ENST00000315938 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
| intron-intron | ENST00000517839 | ENST00000527489 | FADS2 | chr11 | 61560500 | + | GDPD4 | chr11 | 76940277 | - |
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FusionProtFeatures for FADS2_GDPD4 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| FADS2 | GDPD4 |
| Component of a lipid metabolic pathway that catalyzesbiosynthesis of highly unsaturated fatty acids (HUFA) fromprecursor essential polyunsaturated fatty acids (PUFA) linoleicacid (LA) (18:2n-6) and alpha-linolenic acid (ALA) (18:3n-3).Catalyzes the first and rate limiting step in this pathway whichis the desaturation of LA (18:2n-6) and ALA (18:3n-3) into gamma-linoleic acid (GLA) (18:3n-6) and stearidonic acid (18:4n-3)respectively and other desaturation steps. Highly unsaturatedfatty acids (HUFA) play pivotal roles in many biologicalfunctions. It catalizes as well the introduction of a cis doublebond in palmitate to produce the mono-unsaturated fatty acidsapienate, the most abundant fatty acid in sebum.{ECO:0000269|PubMed:12713571, ECO:0000269|PubMed:9867867}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for FADS2_GDPD4 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for FADS2_GDPD4 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| FADS2 | ATXN1L, CLN3, EGFR, ATP1B3, VSIG4, NTRK1, TCTN2, TCTN3, TRIM25 | GDPD4 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for FADS2_GDPD4 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FADS2_GDPD4 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | FADS2 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
| Hgene | FADS2 | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
| Hgene | FADS2 | C0023794 | Lipoidosis | 1 | CTD_human |
| Hgene | FADS2 | C0036341 | Schizophrenia | 1 | PSYGENET |
| Hgene | FADS2 | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
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