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Fusion gene ID: 11599 |
FusionGeneSummary for ENDOV_TMEM104 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ENDOV_TMEM104 | Fusion gene ID: 11599 | Hgene | Tgene | Gene symbol | ENDOV | TMEM104 | Gene ID | 284131 | 54868 |
| Gene name | endonuclease V | transmembrane protein 104 | |
| Synonyms | - | - | |
| Cytomap | 17q25.3 | 17q25.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | endonuclease VhEndoVinosine-specific endoribonuclease | transmembrane protein 104 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q8N8Q3 | Q8NE00 | |
| Ensembl transtripts involved in fusion gene | ENST00000520367, ENST00000518137, ENST00000523999, ENST00000323854, ENST00000522751, ENST00000520284, ENST00000517795, ENST00000518907, ENST00000521847, ENST00000518644, ENST00000518901, ENST00000517295, | ENST00000335464, ENST00000417024, ENST00000582773, ENST00000582330, ENST00000584171, | |
| Fusion gene scores | * DoF score | 4 X 3 X 3=36 | 7 X 4 X 6=168 |
| # samples | 4 | 7 | |
| ** MAII score | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(7/168*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ENDOV [Title/Abstract] AND TMEM104 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | DDR (DNA damage repair) gene involved fusion gene, retained protein feature but frameshift. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | KIRC | TCGA-BP-4983-01A | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000520367 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000520367 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000520367 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000520367 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000520367 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| Frame-shift | ENST00000518137 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000518137 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000518137 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000518137 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000518137 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-3CDS | ENST00000523999 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-intron | ENST00000523999 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-intron | ENST00000523999 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-intron | ENST00000523999 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-intron | ENST00000523999 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| Frame-shift | ENST00000323854 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000323854 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000323854 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000323854 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000323854 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-3CDS | ENST00000522751 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000522751 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000522751 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000522751 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000522751 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-3CDS | ENST00000520284 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000520284 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000520284 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000520284 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000520284 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-3CDS | ENST00000517795 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000517795 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000517795 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000517795 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000517795 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-3CDS | ENST00000518907 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000518907 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000518907 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000518907 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000518907 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-3CDS | ENST00000521847 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-intron | ENST00000521847 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-intron | ENST00000521847 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-intron | ENST00000521847 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| intron-intron | ENST00000521847 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| Frame-shift | ENST00000518644 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000518644 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000518644 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000518644 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000518644 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-3CDS | ENST00000518901 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000518901 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000518901 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000518901 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5UTR-intron | ENST00000518901 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| Frame-shift | ENST00000517295 | ENST00000335464 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000517295 | ENST00000417024 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000517295 | ENST00000582773 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000517295 | ENST00000582330 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
| 5CDS-intron | ENST00000517295 | ENST00000584171 | ENDOV | chr17 | 78397432 | + | TMEM104 | chr17 | 72832066 | + |
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FusionProtFeatures for ENDOV_TMEM104 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ENDOV | TMEM104 |
| Endoribonuclease that specifically cleaves inosine-containing RNAs: cleaves RNA at the second phosphodiester bond 3'to inosine. Has strong preference for single-stranded RNAs(ssRNAs) toward double-stranded RNAs (dsRNAs). Cleaves mRNAs andtRNAs containing inosine. Also able to cleave structure-specificdsRNA substrates containing the specific sites 5'-IIUI-3' and 5'-UIUU-3'. Inosine is present in a number of RNAs following editing;the function of inosine-specific endoribonuclease is stillunclear: it could either play a regulatory role in edited RNAs, orbe involved in antiviral response by removing the hyperedited longviral dsRNA genome that has undergone A-to-I editing. Bindsbranched DNA structures. {ECO:0000269|PubMed:23139746,ECO:0000269|PubMed:23912683, ECO:0000269|PubMed:23912718}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ENDOV_TMEM104 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ENDOV_TMEM104 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ENDOV | BBS2, VWA8, CCT2, ANKRD40, PDCL, SEPHS2, RNF31, TSC22D3, APAF1, NOP9 | TMEM104 | USP36, HTR3C, SLC22A16 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ENDOV_TMEM104 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ENDOV_TMEM104 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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