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Fusion gene ID: 11392 |
FusionGeneSummary for ELF1_RNF144A |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ELF1_RNF144A | Fusion gene ID: 11392 | Hgene | Tgene | Gene symbol | ELF1 | RNF144A | Gene ID | 84337 | 9781 |
| Gene name | elongation factor 1 homolog | ring finger protein 144A | |
| Synonyms | ELF1 | RNF144|UBCE7IP4|hUIP4 | |
| Cytomap | 19p13.2 | 2p25.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | transcription elongation factor 1 homologELF1 homolog, elongation factor 1elongation factor 1 homolog (ELF1, S. cerevisiae) | E3 ubiquitin-protein ligase RNF144AUbcM4-interacting protein 4probable E3 ubiquitin-protein ligase RNF144Aring finger protein 144ubiquitin conjugating enzyme 7 interacting protein 4 | |
| Modification date | 20180529 | 20180523 | |
| UniProtAcc | P32519 | P50876 | |
| Ensembl transtripts involved in fusion gene | ENST00000442101, ENST00000498824, ENST00000239882, | ENST00000320892, ENST00000467276, | |
| Fusion gene scores | * DoF score | 8 X 6 X 4=192 | 4 X 4 X 2=32 |
| # samples | 7 | 4 | |
| ** MAII score | log2(7/192*10)=-1.45567948377619 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: ELF1 [Title/Abstract] AND RNF144A [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | KIRP | TCGA-5P-A9K9-01A | ELF1 | chr13 | 41634974 | - | RNF144A | chr2 | 7081079 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-5UTR | ENST00000442101 | ENST00000320892 | ELF1 | chr13 | 41634974 | - | RNF144A | chr2 | 7081079 | + |
| intron-3UTR | ENST00000442101 | ENST00000467276 | ELF1 | chr13 | 41634974 | - | RNF144A | chr2 | 7081079 | + |
| intron-5UTR | ENST00000498824 | ENST00000320892 | ELF1 | chr13 | 41634974 | - | RNF144A | chr2 | 7081079 | + |
| intron-3UTR | ENST00000498824 | ENST00000467276 | ELF1 | chr13 | 41634974 | - | RNF144A | chr2 | 7081079 | + |
| intron-5UTR | ENST00000239882 | ENST00000320892 | ELF1 | chr13 | 41634974 | - | RNF144A | chr2 | 7081079 | + |
| intron-3UTR | ENST00000239882 | ENST00000467276 | ELF1 | chr13 | 41634974 | - | RNF144A | chr2 | 7081079 | + |
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FusionProtFeatures for ELF1_RNF144A |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ELF1 | RNF144A |
| Transcription factor that activates the LYN and BLKpromoters. Appears to be required for the T-cell-receptor-mediatedtrans activation of HIV-2 gene expression. Binds specifically totwo purine-rich motifs in the HIV-2 enhancer.{ECO:0000269|PubMed:8756667}. | E3 ubiquitin-protein ligase which accepts ubiquitin fromE2 ubiquitin-conjugating enzymes UBE2L3 and UBE2L6 in the form ofa thioester and then directly transfers the ubiquitin to targetedsubstrates. Mediates the ubiquitination and degradation of the DNAdamage kinase PRKDC. {ECO:0000250, ECO:0000269|PubMed:24979766}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ELF1_RNF144A |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ELF1_RNF144A |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ELF1 | HMGA1, NFKB1, REL, SP1, NFYA, HOXC13, RUNX1, HSPBP1 | RNF144A | E2F2, E2F1, E2F3, E2F4, UBE2L3, UBE2L6, UBE2H, UBE2V1, UBE2V2, UBE2K, USP21, USP32, PRKDC, RNF144A, CKAP4 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ELF1_RNF144A |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ELF1_RNF144A |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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