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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 11130

FusionGeneSummary for EGR1_ARL6IP4

check button Fusion gene summary
Fusion gene informationFusion gene name: EGR1_ARL6IP4
Fusion gene ID: 11130
HgeneTgene
Gene symbol

EGR1

ARL6IP4

Gene ID

1958

51329

Gene nameearly growth response 1ADP ribosylation factor like GTPase 6 interacting protein 4
SynonymsAT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225SFRS20|SR-25|SRp25|SRrp37
Cytomap

5q31.2

12q24.31

Type of geneprotein-codingprotein-coding
Descriptionearly growth response protein 1EGR-1nerve growth factor-induced protein Atranscription factor ETR103transcription factor Zif268zinc finger protein 225zinc finger protein Krox-24ADP-ribosylation factor-like protein 6-interacting protein 4ADP-ribosylation factor GTPase 6 interacting protein 4ADP-ribosylation factor-like 6 interacting protein 4ADP-ribosylation-like factor 6 interacting protein 4ARL-6-interacting protein 4HSP-9
Modification date2018052320180519
UniProtAcc

P18146

Q66PJ3

Ensembl transtripts involved in fusion geneENST00000239938, ENST00000543566, 
ENST00000315580, ENST00000392435, 
ENST00000426960, ENST00000453766, 
ENST00000454885, ENST00000412505, 
ENST00000439686, ENST00000357866, 
Fusion gene scores* DoF score5 X 6 X 3=901 X 1 X 1=1
# samples 71
** MAII scorelog2(7/90*10)=-0.362570079384708
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: EGR1 [Title/Abstract] AND ARL6IP4 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneEGR1

GO:0006366

transcription by RNA polymerase II

19057511

HgeneEGR1

GO:0033233

regulation of protein sumoylation

19057511

HgeneEGR1

GO:0045893

positive regulation of transcription, DNA-templated

12560508

HgeneEGR1

GO:0045944

positive regulation of transcription by RNA polymerase II

19057511

HgeneEGR1

GO:0098759

cellular response to interleukin-8

20363028


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AU185680EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000239938ENST00000543566EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
5CDS-3UTRENST00000239938ENST00000315580EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
5CDS-intronENST00000239938ENST00000392435EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
5CDS-intronENST00000239938ENST00000426960EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
5CDS-3UTRENST00000239938ENST00000453766EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
5CDS-3UTRENST00000239938ENST00000454885EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
5CDS-3UTRENST00000239938ENST00000412505EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
5CDS-intronENST00000239938ENST00000439686EGR1chr5

137803524

+ARL6IP4chr12

123467386

+
5CDS-intronENST00000239938ENST00000357866EGR1chr5

137803524

+ARL6IP4chr12

123467386

+

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FusionProtFeatures for EGR1_ARL6IP4


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
EGR1

P18146

ARL6IP4

Q66PJ3

Transcriptional regulator (PubMed:20121949). Recognizesand binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in thepromoter region of target genes (By similarity). Binds double-stranded target DNA, irrespective of the cytosine methylationstatus (PubMed:25258363, PubMed:25999311). Regulates thetranscription of numerous target genes, and thereby plays animportant role in regulating the response to growth factors, DNAdamage, and ischemia. Plays a role in the regulation of cellsurvival, proliferation and cell death. Activates expression ofp53/TP53 and TGFB1, and thereby helps prevent tumor formation.Required for normal progress through mitosis and normalproliferation of hepatocytes after partial hepatectomy. Mediatesresponses to ischemia and hypoxia; regulates the expression ofproteins such as IL1B and CXCL2 that are involved in inflammatoryprocesses and development of tissue damage after ischemia.Regulates biosynthesis of luteinizing hormone (LHB) in thepituitary (By similarity). {ECO:0000250|UniProtKB:P08046,ECO:0000269|PubMed:20121949, ECO:0000269|PubMed:25258363,ECO:0000269|PubMed:25999311}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for EGR1_ARL6IP4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for EGR1_ARL6IP4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for EGR1_ARL6IP4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for EGR1_ARL6IP4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneEGR1C0236736Cocaine-Related Disorders3CTD_human
HgeneEGR1C0008372Intrahepatic Cholestasis2CTD_human
HgeneEGR1C0004364Autoimmune Diseases1CTD_human
HgeneEGR1C0007786Brain Ischemia1CTD_human
HgeneEGR1C0008311Cholangitis1CTD_human
HgeneEGR1C0008370Cholestasis1CTD_human
HgeneEGR1C0020295Hydronephrosis1CTD_human
HgeneEGR1C0021368Inflammation1CTD_human
HgeneEGR1C0022116Ischemia1CTD_human
HgeneEGR1C0025500Mesothelioma1CTD_human
HgeneEGR1C0033578Prostatic Neoplasms1CTD_human
HgeneEGR1C0035126Reperfusion Injury1CTD_human
HgeneEGR1C0036341Schizophrenia1PSYGENET
HgeneEGR1C0242184Hypoxia1CTD_human
HgeneEGR1C0853193Bipolar I disorder1PSYGENET
HgeneEGR1C3495559Juvenile arthritis1CTD_human