FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 10838

FusionGeneSummary for E2F3_WRNIP1

check button Fusion gene summary
Fusion gene informationFusion gene name: E2F3_WRNIP1
Fusion gene ID: 10838
HgeneTgene
Gene symbol

E2F3

WRNIP1

Gene ID

1871

56897

Gene nameE2F transcription factor 3Werner helicase interacting protein 1
SynonymsE2F-3WHIP|bA420G6.2
Cytomap

6p22.3

6p25.2

Type of geneprotein-codingprotein-coding
Descriptiontranscription factor E2F3ATPase WRNIP1putative helicase RUVBL
Modification date2018052020180523
UniProtAcc

O00716

Q96S55

Ensembl transtripts involved in fusion geneENST00000346618, ENST00000535432, 
ENST00000380773, ENST00000380771, 
ENST00000380769, ENST00000380764, 
Fusion gene scores* DoF score4 X 1 X 3=121 X 1 X 1=1
# samples 41
** MAII scorelog2(4/12*10)=1.73696559416621
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(1/1*10)=3.32192809488736
Context

PubMed: E2F3 [Title/Abstract] AND WRNIP1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneE2F3

GO:0045944

positive regulation of transcription by RNA polymerase II

7739537

TgeneWRNIP1

GO:0000731

DNA synthesis involved in DNA repair

15670210

TgeneWRNIP1

GO:0030174

regulation of DNA-dependent DNA replication initiation

15670210


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDOVTCGA-23-2077-01AE2F3chr6

20404063

+WRNIP1chr6

2779497

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000346618ENST00000380773E2F3chr6

20404063

+WRNIP1chr6

2779497

+
intron-3CDSENST00000346618ENST00000380771E2F3chr6

20404063

+WRNIP1chr6

2779497

+
intron-3CDSENST00000346618ENST00000380769E2F3chr6

20404063

+WRNIP1chr6

2779497

+
intron-3CDSENST00000346618ENST00000380764E2F3chr6

20404063

+WRNIP1chr6

2779497

+
Frame-shitENST00000535432ENST00000380773E2F3chr6

20404063

+WRNIP1chr6

2779497

+
Frame-shitENST00000535432ENST00000380771E2F3chr6

20404063

+WRNIP1chr6

2779497

+
Frame-shitENST00000535432ENST00000380769E2F3chr6

20404063

+WRNIP1chr6

2779497

+
Frame-shitENST00000535432ENST00000380764E2F3chr6

20404063

+WRNIP1chr6

2779497

+

Top

FusionProtFeatures for E2F3_WRNIP1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
E2F3

O00716

WRNIP1

Q96S55

Transcription activator that binds DNA cooperativelywith DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whoseproducts are involved in cell cycle regulation or in DNAreplication. The DRTF1/E2F complex functions in the control ofcell-cycle progression from G1 to S phase. E2F3 binds specificallyto RB1 in a cell-cycle dependent manner. Inhibits adipogenesis,probably through the repression of CEBPA binding to its targetgene promoters (By similarity). {ECO:0000250|UniProtKB:O35261}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for E2F3_WRNIP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for E2F3_WRNIP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
E2F3TFE3, WNK1, PKIB, CREBBP, TEAD3, MYBL2, MGA, SPIB, RYBP, FHL2, RNF144A, KMT2D, USF1, HCFC1, ATAD2, BCL6, HELLS, CCNB1, RBL1, MCM4, PCNA, ELAVL1, FZR1, RB1, SRA1, TFDP1, TRIM28, HDAC1, TFDP3, TFDP2, MSH2, DNMT3L, UCHL5, TRIM25WRNIP1WRN, USP25, OSBPL10, USP11, DDX58, TOLLIP, NUP107, RAD18, FGFR1OP, ABL1, WRNIP1, POLD1, SMAD2, SRSF4, UBC, EPAS1, VCP, HDAC11, PIN1, TRIM28, ELP2, ELP3, RNF31, RPS6KB2, NTRK1, PIK3R3, XPO1, IRF3, FOXA3, FOXP3, USP37, CDC5L, ATMIN, PCNA, MCM9


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for E2F3_WRNIP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for E2F3_WRNIP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource