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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 10200

FusionGeneSummary for DNAJA2_NETO2

check button Fusion gene summary
Fusion gene informationFusion gene name: DNAJA2_NETO2
Fusion gene ID: 10200
HgeneTgene
Gene symbol

DNAJA2

NETO2

Gene ID

10294

81831

Gene nameDnaJ heat shock protein family (Hsp40) member A2neuropilin and tolloid like 2
SynonymsCPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2BTCL2|NEOT2
Cytomap

16q11.2

16q12.1

Type of geneprotein-codingprotein-coding
DescriptiondnaJ homolog subfamily A member 2DnaJ (Hsp40) homolog, subfamily A, member 2HIRA interacting protein 4cell cycle progression 3 proteincell cycle progression restoration gene 3 proteinrenal carcinoma antigen NY-REN-14neuropilin and tolloid-like protein 2brain-specific transmembrane protein containing 2 CUB and 1 LDL-receptor class A domains protein 2neuropilin (NRP) and tolloid (TLL)-like 2
Modification date2018052320180519
UniProtAcc

O60884

Q8NC67

Ensembl transtripts involved in fusion geneENST00000317089, ENST00000562435, 
ENST00000303155, 
Fusion gene scores* DoF score5 X 5 X 2=502 X 3 X 2=12
# samples 63
** MAII scorelog2(6/50*10)=0.263034405833794
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(3/12*10)=1.32192809488736
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: DNAJA2 [Title/Abstract] AND NETO2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneDNAJA2

GO:0042026

protein refolding

21231916


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1KF612913DNAJA2chr16

47005261

-NETO2chr16

47117712

-
ChiTaRS3.1KF612912DNAJA2chr16

47005261

-NETO2chr16

47120250

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000317089ENST00000562435DNAJA2chr16

47005261

-NETO2chr16

47117712

-
Frame-shitENST00000317089ENST00000303155DNAJA2chr16

47005261

-NETO2chr16

47117712

-
Frame-shitENST00000317089ENST00000562435DNAJA2chr16

47005261

-NETO2chr16

47120250

-
Frame-shitENST00000317089ENST00000303155DNAJA2chr16

47005261

-NETO2chr16

47120250

-

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FusionProtFeatures for DNAJA2_NETO2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
DNAJA2

O60884

NETO2

Q8NC67

Co-chaperone of Hsc70. Stimulates ATP hydrolysis and thefolding of unfolded proteins mediated by HSPA1A/B (in vitro)(PubMed:24318877). {ECO:0000269|PubMed:24318877}. Accessory subunit of neuronal kainate-sensitiveglutamate receptors, GRIK2 and GRIK3. Increases kainate-receptorchannel activity, slowing the decay kinetics of the receptors,without affecting their expression at the cell surface, andincreasing the open probability of the receptor channels.Modulates the agonist sensitivity of kainate receptors. Slows thedecay of kainate receptor-mediated excitatory postsynapticcurrents (EPSCs), thus directly influencing synaptic transmission(By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for DNAJA2_NETO2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for DNAJA2_NETO2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
DNAJA2SAP25, HIRA, RB1, TERF2, UBC, MYC, AGO4, VHL, SMARCAD1, SOX2, ELAVL1, ERG, CUL3, COPS5, SPRTN, SMAD2, SMAD3, SHC1, EPAS1, IFIT2, HSP90AA1, NOS2, METTL21B, METTL23, CFTR, PAN2, NPM1, HDAC11, EGFR, FBXO6, HECW2, DNAJA4, HSPA8, IRS4, NUDC, TP53, PCSK9, HSPA1A, HSPA6, RNF2, ARAF, ILK, IRAK1, LIMK2, LLGL2, NF2, STRN3, RPS6KB2, NTRK1, ABCF2, CAD, CCT4, DCTN1, HSP90AB1, HSPA4, HSPA4L, HSPA5, HSPH1, PSMC4, PSMD11, STIP1, HSPA9, PSMA6, SMC3, TCP1, TUBB4B, XPO1, MKS1, POC1A, NEFM, HUWE1, TUBA1C, PIGS, NLRP3, MCM2, ESRRB, POU5F1, FAM210A, ZNF131, WWP2, MTMR11, PTPN18, DNAJB1, CYLD, DLD, PDHA1, TRIM25, ESR1, BRCA1, URI1NETO2ELAVL1, HLA-DRA, CD1B, NRG1, TMEM30A, IL9R, HLA-C, BTNL8, PTCH1, HTR3C, CHRNA9, PON2, TMEM17, KRT17, TIA1, AIMP2, IRS2, WDHD1, NELFCD, TRMT6, TMEM168, CCDC82, HS6ST2, ASIC4, TMED6, HTR3A, TMPRSS3, TMEM30B, ZNRF4, CLEC2D, ADAM33, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for DNAJA2_NETO2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for DNAJA2_NETO2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneNETO2C0010606Adenoid Cystic Carcinoma1CTD_human
TgeneNETO2C0036095Salivary Gland Neoplasms1CTD_human