|
||||||
|
 | |
| |
| |
| |
| Open reading frame (ORF) annotation in the exon skipping event |
| |
| |
| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
| Splicing Quantitative Trait Methylation (sQTM) in the skipped exon |
| |
|
Gene summary for LRRFIP2 |
 Gene summary |
| Gene information | Gene symbol | LRRFIP2 | Gene ID | 9209 |
| Gene name | LRR binding FLII interacting protein 2 | |
| Synonyms | HUFI-2 | |
| Cytomap | 3p22.2 | |
| Type of gene | protein-coding | |
| Description | leucine-rich repeat flightless-interacting protein 2LRR FLII-interacting protein 2leucine rich repeat (in FLII) interacting protein 2 | |
| Modification date | 20180522 | |
| UniProtAcc | Q9Y608 | |
| Context | PubMed: LRRFIP2 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
Exon skipping events across known transcript of Ensembl for LRRFIP2 from UCSC genome browser |
| Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
 |
Top |
Gene isoform structures and expression levels for LRRFIP2 |
| Expression levels of gene isoforms across TCGA. |
 |
| Expression levels of gene isoforms across GTEx. |
 |
Top |
Exon skipping events with PSIs in TCGA for LRRFIP2 |
| Information of exkip skipping event in TCGA. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_382343 | 3 | 37095901:37096006:37096576:37096656:37100280:37100401 | 37096576:37096656 | ENSG00000093167.13 | ENST00000354379.4,ENST00000396428.2,ENST00000460646.1,ENST00000336686.4,ENST00000496479.1,ENST00000421307.1,ENST00000421276.2,ENST00000440230.1 |
| exon_skip_382345 | 3 | 37096576:37096656:37100280:37100401:37105232:37105282 | 37100280:37100401 | ENSG00000093167.13 | ENST00000354379.4,ENST00000396428.2,ENST00000460646.1,ENST00000336686.4,ENST00000496479.1,ENST00000421307.1,ENST00000421276.2,ENST00000440230.1 |
| exon_skip_382347 | 3 | 37105232:37105282:37107300:37107433:37114280:37114373 | 37107300:37107433 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382348 | 3 | 37105232:37105282:37107300:37107433:37116514:37116607 | 37107300:37107433 | ENSG00000093167.13 | ENST00000354379.4,ENST00000421276.2,ENST00000440230.1 |
| exon_skip_382352 | 3 | 37107300:37107433:37107714:37107816:37114280:37114373 | 37107714:37107816 | ENSG00000093167.13 | ENST00000336686.4,ENST00000421307.1 |
| exon_skip_382353 | 3 | 37107300:37107433:37107714:37107816:37116514:37116607 | 37107714:37107816 | ENSG00000093167.13 | ENST00000440742.2 |
| exon_skip_382354 | 3 | 37107300:37107433:37114280:37114373:37116514:37116607 | 37114280:37114373 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382355 | 3 | 37107714:37107816:37114280:37114373:37116514:37116607 | 37114280:37114373 | ENSG00000093167.13 | ENST00000336686.4,ENST00000421307.1 |
| exon_skip_382356 | 3 | 37125135:37125297:37132957:37133029:37136282:37136399 | 37132957:37133029 | ENSG00000093167.13 | ENST00000481682.1,ENST00000416425.1,ENST00000336686.4,ENST00000421307.1,ENST00000421276.2,ENST00000440230.1 |
| exon_skip_382357 | 3 | 37125135:37125297:37136282:37136399:37138106:37138151 | 37136282:37136399 | ENSG00000093167.13 | ENST00000354379.4,ENST00000396428.2 |
| exon_skip_382366 | 3 | 37136282:37136399:37138106:37138151:37170553:37170640 | 37138106:37138151 | ENSG00000093167.13 | ENST00000354379.4,ENST00000416425.1,ENST00000421276.2,ENST00000440230.1 |
| exon_skip_382367 | 3 | 37138106:37138151:37144414:37144504:37146945:37147014 | 37144414:37144504 | ENSG00000093167.13 | ENST00000336686.4,ENST00000421307.1 |
| exon_skip_382390 | 3 | 37138106:37138151:37170553:37170640:37190384:37190529 | 37170553:37170640 | ENSG00000093167.13 | ENST00000354379.4,ENST00000416425.1,ENST00000421276.2,ENST00000440230.1 |
| exon_skip_382393 | 3 | 37144414:37144504:37146945:37147014:37149563:37149620 | 37146945:37147014 | ENSG00000093167.13 | ENST00000336686.4,ENST00000421307.1 |
| exon_skip_382394 | 3 | 37146945:37147014:37149563:37149620:37150127:37150175 | 37149563:37149620 | ENSG00000093167.13 | ENST00000336686.4,ENST00000421307.1 |
| exon_skip_382398 | 3 | 37150127:37150175:37151017:37151062:37151143:37151191 | 37151017:37151062 | ENSG00000093167.13 | ENST00000336686.4,ENST00000421307.1 |
| exon_skip_382403 | 3 | 37150127:37150175:37154405:37154471:37162982:37163027 | 37154405:37154471 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382413 | 3 | 37154405:37154471:37156544:37156586:37162982:37163027 | 37156544:37156586 | ENSG00000093167.13 | ENST00000336686.4,ENST00000421307.1 |
| exon_skip_382416 | 3 | 37162982:37163027:37163125:37163182:37170553:37170640 | 37163125:37163182 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382417 | 3 | 37163156:37163182:37169120:37169171:37170553:37170640 | 37169120:37169171 | ENSG00000093167.13 | ENST00000336686.4,ENST00000421307.1 |
| exon_skip_382419 | 3 | 37170553:37170640:37190384:37190529:37216029:37216055 | 37190384:37190529 | ENSG00000093167.13 | ENST00000354379.4,ENST00000396428.2,ENST00000452742.1,ENST00000416425.1,ENST00000434749.1,ENST00000336686.4,ENST00000421307.1,ENST00000421276.2,ENST00000440230.1 |
| exon_skip_382423 | 3 | 37190417:37190529:37196104:37196147:37216029:37216055 | 37196104:37196147 | ENSG00000093167.13 | ENST00000438374.1,ENST00000436858.1,ENST00000482466.1,ENST00000461672.1 |
| exon_skip_382426 | 3 | 37190417:37190529:37216029:37216096:37217550:37217635 | 37216029:37216096 | ENSG00000093167.13 | ENST00000354379.4,ENST00000421276.2 |
| PSI values of skipped exons in TCGA. |
 |
Top |
Exon skipping events with PSIs in GTEx for LRRFIP2 |
| Information of exkip skipping event in GTEx |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_382343 | 3 | 37095901:37096006:37096576:37096656:37100280:37100401 | 37096576:37096656 | ENSG00000093167.13 | ENST00000421307.1,ENST00000354379.4,ENST00000336686.4,ENST00000460646.1,ENST00000421276.2,ENST00000496479.1,ENST00000396428.2,ENST00000440230.1 |
| exon_skip_382345 | 3 | 37096576:37096656:37100280:37100401:37105232:37105282 | 37100280:37100401 | ENSG00000093167.13 | ENST00000421307.1,ENST00000354379.4,ENST00000336686.4,ENST00000460646.1,ENST00000421276.2,ENST00000496479.1,ENST00000396428.2,ENST00000440230.1 |
| exon_skip_382347 | 3 | 37105232:37105282:37107300:37107433:37114280:37114373 | 37107300:37107433 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382348 | 3 | 37105232:37105282:37107300:37107433:37116514:37116607 | 37107300:37107433 | ENSG00000093167.13 | ENST00000354379.4,ENST00000421276.2,ENST00000440230.1 |
| exon_skip_382352 | 3 | 37107300:37107433:37107714:37107816:37114280:37114373 | 37107714:37107816 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4 |
| exon_skip_382353 | 3 | 37107300:37107433:37107714:37107816:37116514:37116607 | 37107714:37107816 | ENSG00000093167.13 | ENST00000440742.2 |
| exon_skip_382354 | 3 | 37107300:37107433:37114280:37114373:37116514:37116607 | 37114280:37114373 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382355 | 3 | 37107714:37107816:37114280:37114373:37116514:37116607 | 37114280:37114373 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4 |
| exon_skip_382356 | 3 | 37125135:37125297:37132957:37133029:37136282:37136399 | 37132957:37133029 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4,ENST00000421276.2,ENST00000440230.1,ENST00000416425.1,ENST00000481682.1 |
| exon_skip_382357 | 3 | 37125135:37125297:37136282:37136399:37138106:37138151 | 37136282:37136399 | ENSG00000093167.13 | ENST00000354379.4,ENST00000396428.2 |
| exon_skip_382366 | 3 | 37136282:37136399:37138106:37138151:37170553:37170640 | 37138106:37138151 | ENSG00000093167.13 | ENST00000354379.4,ENST00000421276.2,ENST00000440230.1,ENST00000416425.1 |
| exon_skip_382367 | 3 | 37138106:37138151:37144414:37144504:37146945:37147014 | 37144414:37144504 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4 |
| exon_skip_382375 | 3 | 37138106:37138151:37150127:37150175:37154405:37154471 | 37150127:37150175 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382390 | 3 | 37138106:37138151:37170553:37170640:37190384:37190529 | 37170553:37170640 | ENSG00000093167.13 | ENST00000354379.4,ENST00000421276.2,ENST00000440230.1,ENST00000416425.1 |
| exon_skip_382393 | 3 | 37144414:37144504:37146945:37147014:37149563:37149620 | 37146945:37147014 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4 |
| exon_skip_382394 | 3 | 37146945:37147014:37149563:37149620:37150127:37150175 | 37149563:37149620 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4 |
| exon_skip_382398 | 3 | 37150127:37150175:37151017:37151062:37151143:37151191 | 37151017:37151062 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4 |
| exon_skip_382403 | 3 | 37150127:37150175:37154405:37154471:37162982:37163027 | 37154405:37154471 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382413 | 3 | 37154405:37154471:37156544:37156586:37162982:37163027 | 37156544:37156586 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4 |
| exon_skip_382416 | 3 | 37162982:37163027:37163125:37163182:37170553:37170640 | 37163125:37163182 | ENSG00000093167.13 | ENST00000396428.2 |
| exon_skip_382417 | 3 | 37163156:37163182:37169120:37169171:37170553:37170640 | 37169120:37169171 | ENSG00000093167.13 | ENST00000421307.1,ENST00000336686.4 |
| exon_skip_382419 | 3 | 37170553:37170640:37190384:37190529:37216029:37216055 | 37190384:37190529 | ENSG00000093167.13 | ENST00000421307.1,ENST00000354379.4,ENST00000336686.4,ENST00000421276.2,ENST00000396428.2,ENST00000440230.1,ENST00000416425.1,ENST00000434749.1,ENST00000452742.1 |
| exon_skip_382423 | 3 | 37190417:37190529:37196104:37196147:37216029:37216055 | 37196104:37196147 | ENSG00000093167.13 | ENST00000461672.1,ENST00000438374.1,ENST00000436858.1,ENST00000482466.1 |
| exon_skip_382426 | 3 | 37190417:37190529:37216029:37216096:37217550:37217635 | 37216029:37216096 | ENSG00000093167.13 | ENST00000354379.4,ENST00000421276.2 |
| PSI values of skipped exons in GTEx. |
 |
| * Skipped exon sequences. |
Top |
Open reading frame (ORF) annotation in the exon skipping event for LRRFIP2 |
| Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000336686 | 37190384 | 37190529 | 3UTR-3CDS |
| ENST00000336686 | 37096576 | 37096656 | Frame-shift |
| ENST00000336686 | 37100280 | 37100401 | Frame-shift |
| ENST00000336686 | 37107714 | 37107816 | In-frame |
| ENST00000336686 | 37114280 | 37114373 | In-frame |
| ENST00000336686 | 37132957 | 37133029 | In-frame |
| ENST00000336686 | 37144414 | 37144504 | In-frame |
| ENST00000336686 | 37146945 | 37147014 | In-frame |
| ENST00000336686 | 37149563 | 37149620 | In-frame |
| ENST00000336686 | 37151017 | 37151062 | In-frame |
| ENST00000336686 | 37156544 | 37156586 | In-frame |
| ENST00000336686 | 37169120 | 37169171 | In-frame |
| Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000336686 | 37190384 | 37190529 | 3UTR-3CDS |
| ENST00000336686 | 37096576 | 37096656 | Frame-shift |
| ENST00000336686 | 37100280 | 37100401 | Frame-shift |
| ENST00000336686 | 37107714 | 37107816 | In-frame |
| ENST00000336686 | 37114280 | 37114373 | In-frame |
| ENST00000336686 | 37132957 | 37133029 | In-frame |
| ENST00000336686 | 37144414 | 37144504 | In-frame |
| ENST00000336686 | 37146945 | 37147014 | In-frame |
| ENST00000336686 | 37149563 | 37149620 | In-frame |
| ENST00000336686 | 37151017 | 37151062 | In-frame |
| ENST00000336686 | 37156544 | 37156586 | In-frame |
| ENST00000336686 | 37169120 | 37169171 | In-frame |
Top |
Infer the effects of exon skipping event on protein functional features for LRRFIP2 |
| Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window. |
 |
| Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000336686 | 3225 | 721 | 37169120 | 37169171 | 259 | 309 | 59 | 76 |
| ENST00000336686 | 3225 | 721 | 37156544 | 37156586 | 412 | 453 | 110 | 124 |
| ENST00000336686 | 3225 | 721 | 37151017 | 37151062 | 646 | 690 | 188 | 203 |
| ENST00000336686 | 3225 | 721 | 37149563 | 37149620 | 739 | 795 | 219 | 238 |
| ENST00000336686 | 3225 | 721 | 37146945 | 37147014 | 796 | 864 | 238 | 261 |
| ENST00000336686 | 3225 | 721 | 37144414 | 37144504 | 865 | 954 | 261 | 291 |
| ENST00000336686 | 3225 | 721 | 37132957 | 37133029 | 1117 | 1188 | 345 | 369 |
| ENST00000336686 | 3225 | 721 | 37114280 | 37114373 | 1453 | 1545 | 457 | 488 |
| ENST00000336686 | 3225 | 721 | 37107714 | 37107816 | 1546 | 1647 | 488 | 522 |
| Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000336686 | 3225 | 721 | 37169120 | 37169171 | 259 | 309 | 59 | 76 |
| ENST00000336686 | 3225 | 721 | 37156544 | 37156586 | 412 | 453 | 110 | 124 |
| ENST00000336686 | 3225 | 721 | 37151017 | 37151062 | 646 | 690 | 188 | 203 |
| ENST00000336686 | 3225 | 721 | 37149563 | 37149620 | 739 | 795 | 219 | 238 |
| ENST00000336686 | 3225 | 721 | 37146945 | 37147014 | 796 | 864 | 238 | 261 |
| ENST00000336686 | 3225 | 721 | 37144414 | 37144504 | 865 | 954 | 261 | 291 |
| ENST00000336686 | 3225 | 721 | 37132957 | 37133029 | 1117 | 1188 | 345 | 369 |
| ENST00000336686 | 3225 | 721 | 37114280 | 37114373 | 1453 | 1545 | 457 | 488 |
| ENST00000336686 | 3225 | 721 | 37107714 | 37107816 | 1546 | 1647 | 488 | 522 |
| Lost protein functional features of individual exon skipping events in TCGA. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q9Y608 | 59 | 76 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 59 | 76 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 59 | 76 | 60 | 76 | Alternative sequence | ID=VSP_056969;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 59 | 76 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 59 | 76 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 110 | 124 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 110 | 124 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 110 | 124 | 111 | 124 | Alternative sequence | ID=VSP_056970;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 110 | 124 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 110 | 124 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 110 | 124 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 188 | 203 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 188 | 203 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 188 | 203 | 146 | 202 | Alternative sequence | ID=VSP_056971;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 188 | 203 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 188 | 203 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 188 | 203 | 190 | 190 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 202 | 202 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 190 | 190 | Mutagenesis | Note=No change in LPS-induced NFKB activity. S->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 200 | 200 | Mutagenesis | Note=No change in LPS-induced NFKB activity. S->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 202 | 202 | Mutagenesis | Note=Reduction in LPS-induced NFKB activity. S->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 202 | 202 | Mutagenesis | Note=No change in LPS-induced NFKB activity. Interacts with MYD88 in an LPS-inducible manner. S->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 219 | 238 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 219 | 238 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 219 | 238 | 220 | 291 | Alternative sequence | ID=VSP_056972;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 219 | 238 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 219 | 238 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 219 | 238 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 238 | 261 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 238 | 261 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 238 | 261 | 220 | 291 | Alternative sequence | ID=VSP_056972;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 238 | 261 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 238 | 261 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 238 | 261 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 261 | 291 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 261 | 291 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 261 | 291 | 220 | 291 | Alternative sequence | ID=VSP_056972;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 261 | 291 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 261 | 291 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 261 | 291 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 345 | 369 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 345 | 369 | 346 | 369 | Alternative sequence | ID=VSP_019676;Note=In isoform 2 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 345 | 369 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 345 | 369 | 349 | 524 | Coiled coil | Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q9Y608 | 345 | 369 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 457 | 488 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 457 | 488 | 457 | 521 | Alternative sequence | ID=VSP_019677;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 457 | 488 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 457 | 488 | 349 | 524 | Coiled coil | Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q9Y608 | 488 | 522 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 488 | 522 | 457 | 521 | Alternative sequence | ID=VSP_019677;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 488 | 522 | 489 | 522 | Alternative sequence | ID=VSP_056973;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 488 | 522 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 488 | 522 | 349 | 524 | Coiled coil | Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Lost protein functional features of individual exon skipping events in GTEx. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q9Y608 | 59 | 76 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 59 | 76 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 59 | 76 | 60 | 76 | Alternative sequence | ID=VSP_056969;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 59 | 76 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 59 | 76 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 110 | 124 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 110 | 124 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 110 | 124 | 111 | 124 | Alternative sequence | ID=VSP_056970;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 110 | 124 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 110 | 124 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 110 | 124 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 188 | 203 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 188 | 203 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 188 | 203 | 146 | 202 | Alternative sequence | ID=VSP_056971;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 188 | 203 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 188 | 203 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 188 | 203 | 190 | 190 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 202 | 202 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 190 | 190 | Mutagenesis | Note=No change in LPS-induced NFKB activity. S->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 200 | 200 | Mutagenesis | Note=No change in LPS-induced NFKB activity. S->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 202 | 202 | Mutagenesis | Note=Reduction in LPS-induced NFKB activity. S->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 202 | 202 | Mutagenesis | Note=No change in LPS-induced NFKB activity. Interacts with MYD88 in an LPS-inducible manner. S->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21220426;Dbxref=PMID:21220426 |
| Q9Y608 | 188 | 203 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 219 | 238 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 219 | 238 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 219 | 238 | 220 | 291 | Alternative sequence | ID=VSP_056972;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 219 | 238 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 219 | 238 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 219 | 238 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 238 | 261 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 238 | 261 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 238 | 261 | 220 | 291 | Alternative sequence | ID=VSP_056972;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 238 | 261 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 238 | 261 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 238 | 261 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 261 | 291 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 261 | 291 | 60 | 291 | Alternative sequence | ID=VSP_019675;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 261 | 291 | 220 | 291 | Alternative sequence | ID=VSP_056972;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 261 | 291 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 261 | 291 | 118 | 342 | Compositional bias | Note=Ser-rich |
| Q9Y608 | 261 | 291 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 345 | 369 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 345 | 369 | 346 | 369 | Alternative sequence | ID=VSP_019676;Note=In isoform 2 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 345 | 369 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 345 | 369 | 349 | 524 | Coiled coil | Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q9Y608 | 345 | 369 | 1 | 370 | Region | Note=DVL3-binding |
| Q9Y608 | 457 | 488 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 457 | 488 | 457 | 521 | Alternative sequence | ID=VSP_019677;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 457 | 488 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 457 | 488 | 349 | 524 | Coiled coil | Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q9Y608 | 488 | 522 | 1 | 621 | Alternative sequence | ID=VSP_019674;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:17974005;Dbxref=PMID:17974005 |
| Q9Y608 | 488 | 522 | 457 | 521 | Alternative sequence | ID=VSP_019677;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334 |
| Q9Y608 | 488 | 522 | 489 | 522 | Alternative sequence | ID=VSP_056973;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9Y608 | 488 | 522 | 1 | 721 | Chain | ID=PRO_0000245246;Note=Leucine-rich repeat flightless-interacting protein 2 |
| Q9Y608 | 488 | 522 | 349 | 524 | Coiled coil | Ontology_term=ECO:0000255;evidence=ECO:0000255 |
Top |
SNVs in the skipped exons for LRRFIP2 |
| - Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window. |
 |
| - Differential PSIs between mutated versus non-mutated samples. |
LRRFIP2_LIHC_exon_skip_382417_psi_boxplot.png |
| - Non-synonymous mutations located in the skipped exons in TCGA. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| COAD | TCGA-G4-6588-01 | exon_skip_382354 exon_skip_382355 | 37114281 | 37114373 | 37114286 | 37114286 | Frame_Shift_Del | T | - | p.I487fs |
| LIHC | TCGA-DD-A3A0-01 | exon_skip_382354 exon_skip_382355 | 37114281 | 37114373 | 37114286 | 37114286 | Frame_Shift_Del | T | - | p.I487fs |
| STAD | TCGA-HU-A4G9-01 | exon_skip_382354 exon_skip_382355 | 37114281 | 37114373 | 37114286 | 37114286 | Frame_Shift_Del | T | - | p.I487fs |
| STAD | TCGA-HU-A4GU-01 | exon_skip_382354 exon_skip_382355 | 37114281 | 37114373 | 37114286 | 37114286 | Frame_Shift_Del | T | - | p.I487fs |
| LIHC | TCGA-DD-A1EG-01 | exon_skip_382357 | 37136283 | 37136399 | 37136330 | 37136330 | Frame_Shift_Del | C | - | p.D330fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_382417 | 37169121 | 37169171 | 37169140 | 37169140 | Frame_Shift_Del | C | - | p.G70fs |
| STAD | TCGA-CG-4305-01 | exon_skip_382354 exon_skip_382355 | 37114281 | 37114373 | 37114285 | 37114286 | Frame_Shift_Ins | - | T | p.I487fs |
| STAD | TCGA-CG-4305-01 | exon_skip_382354 exon_skip_382355 | 37114281 | 37114373 | 37114286 | 37114287 | Frame_Shift_Ins | - | T | p.I487fs |
| READ | TCGA-EI-6917-01 | exon_skip_382353 exon_skip_382352 | 37107715 | 37107816 | 37107798 | 37107798 | Nonsense_Mutation | C | A | p.E495X |
| UCEC | TCGA-AX-A05Z-01 | exon_skip_382353 exon_skip_382352 | 37107715 | 37107816 | 37107798 | 37107798 | Nonsense_Mutation | C | A | p.E495* |
| UCEC | TCGA-B5-A0JY-01 | exon_skip_382353 exon_skip_382352 | 37107715 | 37107816 | 37107798 | 37107798 | Nonsense_Mutation | C | A | p.E495* |
| UCS | TCGA-ND-A4WC-01 | exon_skip_382353 exon_skip_382352 | 37107715 | 37107816 | 37107798 | 37107798 | Nonsense_Mutation | C | A | p.E495* |
| UCS | TCGA-ND-A4WC-01 | exon_skip_382353 exon_skip_382352 | 37107715 | 37107816 | 37107798 | 37107798 | Nonsense_Mutation | C | A | p.E495X |
| UCEC | TCGA-BS-A0UF-01 | exon_skip_382354 exon_skip_382355 | 37114281 | 37114373 | 37114352 | 37114352 | Nonsense_Mutation | T | A | p.K465* |
| READ | TCGA-F5-6814-01 | exon_skip_382390 | 37170554 | 37170640 | 37170556 | 37170556 | Nonsense_Mutation | C | A | p.E59X |
| COAD | TCGA-AA-3554-01 | exon_skip_382390 | 37170554 | 37170640 | 37170568 | 37170568 | Nonsense_Mutation | G | A | p.R55X |
| COAD | TCGA-D5-6928-01 | exon_skip_382390 | 37170554 | 37170640 | 37170568 | 37170568 | Nonsense_Mutation | G | A | p.R55X |
| LUAD | TCGA-55-8089-01 | exon_skip_382390 | 37170554 | 37170640 | 37170577 | 37170577 | Nonsense_Mutation | C | A | p.E52* |
| THYM | TCGA-ZB-A963-01 | exon_skip_382390 | 37170554 | 37170640 | 37170637 | 37170637 | Nonsense_Mutation | C | A | p.E32X |
| LIHC | TCGA-DD-AACI-01 | exon_skip_382356 | 37132958 | 37133029 | 37133031 | 37133031 | Splice_Site | T | C | . |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_382394 | 37149564 | 37149620 | 37149563 | 37149563 | Splice_Site | C | - | . |
| - Depth of coverage in the three exons composing exon skipping event |
| Depth of coverage in three exons | Mutation description |
 | Sample: TCGA-DD-A39Y-01 |
| Cancer type: LIHC | |
| ESID: exon_skip_382417 | |
| Skipped exon start: 37169121 | |
| Skipped exon end: 37169171 | |
| Mutation start: 37169140 | |
| Mutation end: 37169140 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: C | |
| Mutation seq: - | |
| AAchange: p.G70fs | |
| Sample: TCGA-DD-A39Y-01 |
| Cancer type: LIHC | |
| ESID: exon_skip_382394 | |
| Skipped exon start: 37149564 | |
| Skipped exon end: 37149620 | |
| Mutation start: 37149563 | |
| Mutation end: 37149563 | |
| Mutation type: Splice_Site | |
| Reference seq: C | |
| Mutation seq: - | |
| AAchange: . | |
exon_skip_105023_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_101824_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_106032_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_106378_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_106523_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_106524_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_109527_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_109529_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_110000_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_11029_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_111893_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_111894_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_112042_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_112647_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_114045_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_114046_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_114565_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_11916_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_1234_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_1237_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_124639_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_124693_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_124695_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_130535_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_13071_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_131505_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_133556_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_135211_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_135545_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_135553_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_135763_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_137564_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_138947_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_139222_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_141370_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_141945_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_143515_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_143728_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_14772_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_148319_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_148332_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_14897_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_150985_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_151979_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_153387_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_153494_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_153786_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_155021_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_155962_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_155964_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_19897_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_19898_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_19902_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_20050_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_20053_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_21823_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_22411_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_22908_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_23470_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_24870_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_25336_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_26316_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_26461_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_26958_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_27038_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_27415_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_283977_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_284046_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_289275_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_291046_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_291218_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_291361_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_292293_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_292562_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_293040_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_293045_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_293052_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_293118_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_293546_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_293549_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_294064_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_294067_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_29565_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_29733_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_299242_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_299287_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_299304_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_299306_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_299307_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_30001_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_300924_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_301267_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_301272_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_302090_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_302094_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_302095_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_302097_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_3064_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_306549_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_30744_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_309425_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_310969_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_311352_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_313264_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_313342_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_313654_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_315571_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_315574_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_316800_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_316803_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_31730_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_317832_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_319816_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_320714_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_320715_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_320801LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_320805_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_321225_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_323910_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_32899_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_329221_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_331329_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_331444_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_332241_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_334248_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_335284_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_337247_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_34018_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_340419_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_34444_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_34446_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_346508_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_346721_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_346953_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_350661_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_352716_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_35400_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_354396_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_359435_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_360259_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_360261_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_360316_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_361235_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_364697_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_365330_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_369483_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_369915_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_371550_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_371589_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_374387_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_374402_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_37475_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_37491_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_374945_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_375131_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_375133_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_375393_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_376191_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_378801_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_379758_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_379855_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_380880_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_3815_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_382091_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_382119_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_382121_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_382417_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_382738_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_383797_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_383994_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_385335_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_387812_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_387826_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_389735_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_39262_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_39479_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_39686_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_422548_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_423337_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_423570_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_424308_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_426528_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_426530_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_427280_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_430528_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_433655_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_434375_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_435237_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_435489_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_436454_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_436487_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_436488_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_436494_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_437675_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_437849_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_439418_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_440194_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_440267_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_441705_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_442657_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_443695_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_444190_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_445458_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_446492_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_446495_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_446671_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_450412_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_450419_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_453010_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_454760_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_456871_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_458039_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_458091_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_45824_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_458292_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_458727_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_459683_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_460515_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_463936_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_464994_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_465641_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_469364_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_470206_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_470208_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_470470_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_470485_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_471015_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_471018_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_471458_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_472524_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_472955_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_475132_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_47552_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_476535_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_477211_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_477637_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_478117_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_47838_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_478401_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_478926_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_483792_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_487634_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_489575_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_490603_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_491406_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_492075_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_492152_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_493904_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_493918_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_493920_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_494000_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_494030_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_494170_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_494284_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_499522_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_503301_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_503593_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_503665_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_504513_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_507316_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_507513_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_50803_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_50804_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_510119_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_512208_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_513207_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_513240_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_5141_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_52393_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_54542_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_55185_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_56398_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_56399_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_56834_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_58444_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_58452_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_5861_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_60290_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_60294_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_60561_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_61147_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_6331_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_6399_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_64652_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_64657_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_65996_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_66666_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_67549_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_68080_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_6817_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_69250_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_70509_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_71759_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_71774_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_73487_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_73796_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_74728_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_75089_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_75391_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_77962_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_78386_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_82069_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_82070_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_83493_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_83494_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_83512_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_83602_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_84090_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_84528_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_87720_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_87721_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_89597_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_93891_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_94842_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_94844_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_96282_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_96298_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_96557_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_96886_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_97738_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_97739_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_9807_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_98550_LIHC_TCGA-DD-A39Y-01.png | |
 | Sample: TCGA-BS-A0UF-01 |
| Cancer type: UCEC | |
| ESID: exon_skip_382355 | |
| Skipped exon start: 37114281 | |
| Skipped exon end: 37114373 | |
| Mutation start: 37114352 | |
| Mutation end: 37114352 | |
| Mutation type: Nonsense_Mutation | |
| Reference seq: T | |
| Mutation seq: A | |
| AAchange: p.K465* | |
exon_skip_104037_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_105868_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_105985_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_115426_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_14705_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_147467_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_19372_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_286379_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_294437_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_321837_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_324767_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_345944_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_345950_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_382354_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_389258_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_389265_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_39691_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_40297_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_461887_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_482464_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_59390_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_82288_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_84605_UCEC_TCGA-BS-A0UF-01.png | |
exon_skip_95240_UCEC_TCGA-BS-A0UF-01.png | |
 | Sample: TCGA-G4-6588-01 |
| Cancer type: COAD | |
| ESID: exon_skip_382355 | |
| Skipped exon start: 37114281 | |
| Skipped exon end: 37114373 | |
| Mutation start: 37114286 | |
| Mutation end: 37114286 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: T | |
| Mutation seq: - | |
| AAchange: p.I487fs | |
exon_skip_135806_COAD_TCGA-G4-6588-01.png | |
exon_skip_136696_COAD_TCGA-G4-6588-01.png | |
exon_skip_313058_COAD_TCGA-G4-6588-01.png | |
exon_skip_322889_COAD_TCGA-G4-6588-01.png | |
exon_skip_322890_COAD_TCGA-G4-6588-01.png | |
exon_skip_330818_COAD_TCGA-G4-6588-01.png | |
exon_skip_382354_COAD_TCGA-G4-6588-01.png | |
exon_skip_386802_COAD_TCGA-G4-6588-01.png | |
exon_skip_4028_COAD_TCGA-G4-6588-01.png | |
exon_skip_434039_COAD_TCGA-G4-6588-01.png | |
exon_skip_434040_COAD_TCGA-G4-6588-01.png | |
exon_skip_5121_COAD_TCGA-G4-6588-01.png | |
exon_skip_5861_COAD_TCGA-G4-6588-01.png | |
exon_skip_68768_COAD_TCGA-G4-6588-01.png | |
exon_skip_76742_COAD_TCGA-G4-6588-01.png | |
 | Sample: TCGA-CG-4305-01 |
| Cancer type: STAD | |
| ESID: exon_skip_382355 | |
| Skipped exon start: 37114281 | |
| Skipped exon end: 37114373 | |
| Mutation start: 37114285 | |
| Mutation end: 37114286 | |
| Mutation type: Frame_Shift_Ins | |
| Reference seq: - | |
| Mutation seq: T | |
| AAchange: p.I487fs | |
| Sample: TCGA-CG-4305-01 |
| Cancer type: STAD | |
| ESID: exon_skip_382355 | |
| Skipped exon start: 37114281 | |
| Skipped exon end: 37114373 | |
| Mutation start: 37114286 | |
| Mutation end: 37114287 | |
| Mutation type: Frame_Shift_Ins | |
| Reference seq: - | |
| Mutation seq: T | |
| AAchange: p.I487fs | |
exon_skip_111824_STAD_TCGA-CG-4305-01.png | |
exon_skip_111829_STAD_TCGA-CG-4305-01.png | |
exon_skip_146150_STAD_TCGA-CG-4305-01.png | |
exon_skip_290798_STAD_TCGA-CG-4305-01.png | |
exon_skip_301298_STAD_TCGA-CG-4305-01.png | |
exon_skip_306904_STAD_TCGA-CG-4305-01.png | |
exon_skip_331098_STAD_TCGA-CG-4305-01.png | |
exon_skip_340412_STAD_TCGA-CG-4305-01.png | |
exon_skip_340419_STAD_TCGA-CG-4305-01.png | |
exon_skip_361126_STAD_TCGA-CG-4305-01.png | |
exon_skip_382354_STAD_TCGA-CG-4305-01.png | |
exon_skip_423582_STAD_TCGA-CG-4305-01.png | |
exon_skip_45131_STAD_TCGA-CG-4305-01.png | |
exon_skip_45132_STAD_TCGA-CG-4305-01.png | |
exon_skip_6108_STAD_TCGA-CG-4305-01.png | |
exon_skip_64984_STAD_TCGA-CG-4305-01.png | |
 | Sample: TCGA-HU-A4G9-01 |
| Cancer type: STAD | |
| ESID: exon_skip_382355 | |
| Skipped exon start: 37114281 | |
| Skipped exon end: 37114373 | |
| Mutation start: 37114286 | |
| Mutation end: 37114286 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: T | |
| Mutation seq: - | |
| AAchange: p.I487fs | |
exon_skip_124857_STAD_TCGA-HU-A4G9-01.png | |
exon_skip_382354_STAD_TCGA-HU-A4G9-01.png | |
 | Sample: TCGA-HU-A4GU-01 |
| Cancer type: STAD | |
| ESID: exon_skip_382355 | |
| Skipped exon start: 37114281 | |
| Skipped exon end: 37114373 | |
| Mutation start: 37114286 | |
| Mutation end: 37114286 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: T | |
| Mutation seq: - | |
| AAchange: p.I487fs | |
exon_skip_109771_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_133402_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_133403_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_146776_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_147024_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_149455_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_335090_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_382354_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_433982_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_433985_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_437417_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_437418_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_454428_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_454431_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_454433_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_465824_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_467518_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_480057_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_485377_STAD_TCGA-HU-A4GU-01.png | |
exon_skip_500520_STAD_TCGA-HU-A4GU-01.png | |
 | Sample: TCGA-EI-6917-01 |
| Cancer type: READ | |
| ESID: exon_skip_382352 | |
| Skipped exon start: 37107715 | |
| Skipped exon end: 37107816 | |
| Mutation start: 37107798 | |
| Mutation end: 37107798 | |
| Mutation type: Nonsense_Mutation | |
| Reference seq: C | |
| Mutation seq: A | |
| AAchange: p.E495X | |
exon_skip_304776_READ_TCGA-EI-6917-01.png | |
exon_skip_364099_READ_TCGA-EI-6917-01.png | |
exon_skip_364103_READ_TCGA-EI-6917-01.png | |
exon_skip_378065_READ_TCGA-EI-6917-01.png | |
exon_skip_382353_READ_TCGA-EI-6917-01.png | |
exon_skip_385179_READ_TCGA-EI-6917-01.png | |
exon_skip_425103_READ_TCGA-EI-6917-01.png | |
exon_skip_441422_READ_TCGA-EI-6917-01.png | |
exon_skip_467850_READ_TCGA-EI-6917-01.png | |
exon_skip_513411_READ_TCGA-EI-6917-01.png | |
exon_skip_68288_READ_TCGA-EI-6917-01.png | |
exon_skip_68289_READ_TCGA-EI-6917-01.png | |
exon_skip_78464_READ_TCGA-EI-6917-01.png | |
 | Sample: TCGA-AX-A05Z-01 |
| Cancer type: UCEC | |
| ESID: exon_skip_382352 | |
| Skipped exon start: 37107715 | |
| Skipped exon end: 37107816 | |
| Mutation start: 37107798 | |
| Mutation end: 37107798 | |
| Mutation type: Nonsense_Mutation | |
| Reference seq: C | |
| Mutation seq: A | |
| AAchange: p.E495* | |
exon_skip_19387_UCEC_TCGA-AX-A05Z-01.png | |
exon_skip_19397_UCEC_TCGA-AX-A05Z-01.png | |
exon_skip_301197_UCEC_TCGA-AX-A05Z-01.png | |
exon_skip_340619_UCEC_TCGA-AX-A05Z-01.png | |
exon_skip_382353_UCEC_TCGA-AX-A05Z-01.png | |
exon_skip_429532_UCEC_TCGA-AX-A05Z-01.png | |
exon_skip_429535_UCEC_TCGA-AX-A05Z-01.png | |
exon_skip_71335_UCEC_TCGA-AX-A05Z-01.png | |
exon_skip_74728_UCEC_TCGA-AX-A05Z-01.png | |
 | Sample: TCGA-B5-A0JY-01 |
| Cancer type: UCEC | |
| ESID: exon_skip_382352 | |
| Skipped exon start: 37107715 | |
| Skipped exon end: 37107816 | |
| Mutation start: 37107798 | |
| Mutation end: 37107798 | |
| Mutation type: Nonsense_Mutation | |
| Reference seq: C | |
| Mutation seq: A | |
| AAchange: p.E495* | |
exon_skip_2333_UCEC_TCGA-B5-A0JY-01.png | |
exon_skip_354315_UCEC_TCGA-B5-A0JY-01.png | |
exon_skip_382353_UCEC_TCGA-B5-A0JY-01.png | |
exon_skip_467199_UCEC_TCGA-B5-A0JY-01.png | |
exon_skip_506729_UCEC_TCGA-B5-A0JY-01.png | |
exon_skip_517484_UCEC_TCGA-B5-A0JY-01.png | |
exon_skip_517493_UCEC_TCGA-B5-A0JY-01.png | |
exon_skip_57854_UCEC_TCGA-B5-A0JY-01.png | |
exon_skip_64094_UCEC_TCGA-B5-A0JY-01.png | |
 | Sample: TCGA-ND-A4WC-01 |
| Cancer type: UCS | |
| ESID: exon_skip_382352 | |
| Skipped exon start: 37107715 | |
| Skipped exon end: 37107816 | |
| Mutation start: 37107798 | |
| Mutation end: 37107798 | |
| Mutation type: Nonsense_Mutation | |
| Reference seq: C | |
| Mutation seq: A | |
| AAchange: p.E495X | |
| Sample: TCGA-ND-A4WC-01 |
| Cancer type: UCS | |
| ESID: exon_skip_382352 | |
| Skipped exon start: 37107715 | |
| Skipped exon end: 37107816 | |
| Mutation start: 37107798 | |
| Mutation end: 37107798 | |
| Mutation type: Nonsense_Mutation | |
| Reference seq: C | |
| Mutation seq: A | |
| AAchange: p.E495* | |
exon_skip_149665_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_299626_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_344918_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_360263_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_382353_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_385882_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_443509_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_45962_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_48320_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_484856_UCS_TCGA-ND-A4WC-01.png | |
exon_skip_59444_UCS_TCGA-ND-A4WC-01.png | |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| OC316_OVARY | 37114281 | 37114373 | 37114286 | 37114286 | Frame_Shift_Del | T | - | p.I487fs |
| CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 37114281 | 37114373 | 37114286 | 37114286 | Frame_Shift_Del | T | - | p.I487fs |
| SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 37114281 | 37114373 | 37114286 | 37114286 | Frame_Shift_Del | T | - | p.I487fs |
| JHH1_LIVER | 37114281 | 37114373 | 37114285 | 37114286 | Frame_Shift_Ins | - | T | p.I487fs |
| HSC3_UPPER_AERODIGESTIVE_TRACT | 37138107 | 37138151 | 37138114 | 37138115 | Frame_Shift_Ins | - | AC | p.Y304fs |
| JHESOAD1_OESOPHAGUS | 37163126 | 37163182 | 37163165 | 37163166 | Frame_Shift_Ins | - | GCCC | p.-82fs |
| NCIH292_LUNG | 37096577 | 37096656 | 37096606 | 37096606 | Missense_Mutation | C | T | p.E641K |
| SNU1040_LARGE_INTESTINE | 37096577 | 37096656 | 37096650 | 37096650 | Missense_Mutation | G | A | p.A626V |
| ESS1_ENDOMETRIUM | 37114281 | 37114373 | 37114304 | 37114304 | Missense_Mutation | G | T | p.L481I |
| L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 37132958 | 37133029 | 37133022 | 37133022 | Missense_Mutation | T | A | p.Y348F |
| KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 37136283 | 37136399 | 37136286 | 37136286 | Missense_Mutation | C | A | p.L344F |
| NCIH1573_LUNG | 37136283 | 37136399 | 37136333 | 37136333 | Missense_Mutation | C | T | p.G329R |
| D423MG_CENTRAL_NERVOUS_SYSTEM | 37144415 | 37144504 | 37144473 | 37144473 | Missense_Mutation | T | C | p.N272S |
| MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 37144415 | 37144504 | 37144482 | 37144482 | Missense_Mutation | C | T | p.S269N |
| HEC251_ENDOMETRIUM | 37146946 | 37147014 | 37147005 | 37147005 | Missense_Mutation | C | T | p.D242N |
| CTV1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 37149564 | 37149620 | 37149581 | 37149581 | Missense_Mutation | C | T | p.A233T |
| HEC251_ENDOMETRIUM | 37151018 | 37151062 | 37151047 | 37151047 | Missense_Mutation | T | C | p.N194D |
| KMH2_THYROID | 37154406 | 37154471 | 37154444 | 37154444 | Missense_Mutation | T | G | p.M134L |
| HEC59_ENDOMETRIUM | 37156545 | 37156586 | 37156567 | 37156567 | Missense_Mutation | C | T | p.R117K |
| MFE296_ENDOMETRIUM | 37163126 | 37163182 | 37163167 | 37163167 | Missense_Mutation | C | G | p.A82P |
| WM35_SKIN | 37169121 | 37169171 | 37169150 | 37169150 | Missense_Mutation | G | A | p.R67W |
| L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 37170554 | 37170640 | 37170573 | 37170573 | Missense_Mutation | A | T | p.L53Q |
| HN_UPPER_AERODIGESTIVE_TRACT | 37170554 | 37170640 | 37170585 | 37170585 | Missense_Mutation | C | T | p.R49H |
| SNU1040_LARGE_INTESTINE | 37170554 | 37170640 | 37170585 | 37170585 | Missense_Mutation | C | T | p.R49H |
| CHL1_SKIN | 37170554 | 37170640 | 37170594 | 37170594 | Missense_Mutation | C | T | p.R46K |
| HMCB_SKIN | 37170554 | 37170640 | 37170594 | 37170594 | Missense_Mutation | C | T | p.R46K |
| HEC108_ENDOMETRIUM | 37170554 | 37170640 | 37170607 | 37170607 | Missense_Mutation | G | A | p.R42W |
| SNUC1_LARGE_INTESTINE | 37136283 | 37136399 | 37136377 | 37136377 | Nonsense_Mutation | G | T | p.S314* |
Top |
Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for LRRFIP2 |
| sQTL information located at the skipped exons. |
| Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
Top |
Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for LRRFIP2 |
Top |
Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for LRRFIP2 |
Top |
RelatedDrugs for LRRFIP2 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for LRRFIP2 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|