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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for ACVR1

check button Gene summary
Gene informationGene symbol

ACVR1

Gene ID

90

Gene nameactivin A receptor type 1
SynonymsACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI
Cytomap

2q24.1

Type of geneprotein-coding
Descriptionactivin receptor type-1TGF-B superfamily receptor type Iactivin A receptor, type Iactivin A receptor, type II-like kinase 2activin receptor type Iactivin receptor-like kinase 2hydroxyalkyl-protein kinaseserine/threonine-protein kinase receptor R1
Modification date20180523
UniProtAcc

Q04771

ContextPubMed: ACVR1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ACVR1

GO:0006468

protein phosphorylation

12065756|19506109

ACVR1

GO:0007179

transforming growth factor beta receptor signaling pathway

8242742

ACVR1

GO:0010862

positive regulation of pathway-restricted SMAD protein phosphorylation

19506109

ACVR1

GO:0018107

peptidyl-threonine phosphorylation

19736306

ACVR1

GO:0030509

BMP signaling pathway

18436533

ACVR1

GO:0032924

activin receptor signaling pathway

19506109

ACVR1

GO:0045893

positive regulation of transcription, DNA-templated

8242742

ACVR1

GO:0045944

positive regulation of transcription by RNA polymerase II

19506109

ACVR1

GO:0060389

pathway-restricted SMAD protein phosphorylation

19736306

ACVR1

GO:2000017

positive regulation of determination of dorsal identity

19506109


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Exon skipping events across known transcript of Ensembl for ACVR1 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for ACVR1

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for ACVR1

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3441262158594951:158595082:158617391:158617589:158622432:158622708158617391:158617589ENSG00000115170.9ENST00000409283.2,ENST00000263640.3,ENST00000434821.1,ENST00000410057.2
exon_skip_3441292158636965:158637112:158655938:158656012:158674896:158675071158655938:158656012ENSG00000115170.9ENST00000263640.3,ENST00000539637.1,ENST00000424669.1,ENST00000434821.1,ENST00000412025.1,ENST00000410057.2,ENST00000440523.1
exon_skip_3441392158655940:158656012:158674896:158675071:158683039:158683158158674896:158675071ENSG00000115170.9ENST00000413751.1,ENST00000539637.1,ENST00000410057.2
exon_skip_3441422158655940:158656012:158674896:158675071:158732307:158732352158674896:158675071ENSG00000115170.9ENST00000434821.1
exon_skip_3441542158674896:158675071:158675914:158676001:158732307:158732352158675914:158676001ENSG00000115170.9ENST00000424669.1
exon_skip_3441552158674896:158675071:158683039:158683158:158694752:158694790158683039:158683158ENSG00000115170.9ENST00000410057.2
exon_skip_3441572158674896:158675071:158683039:158683158:158716566:158716691158683039:158683158ENSG00000115170.9ENST00000413751.1
exon_skip_3441602158675059:158675071:158683039:158683158:158732307:158732352158683039:158683158ENSG00000115170.9ENST00000539637.1
exon_skip_3441742158683039:158683158:158716566:158716691:158732307:158732352158716566:158716691ENSG00000115170.9ENST00000413751.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for ACVR1

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3441262158594951:158595082:158617391:158617589:158622432:158622708158617391:158617589ENSG00000115170.9ENST00000263640.3,ENST00000409283.2,ENST00000434821.1,ENST00000410057.2
exon_skip_3441292158636965:158637112:158655938:158656012:158674896:158675071158655938:158656012ENSG00000115170.9ENST00000263640.3,ENST00000434821.1,ENST00000410057.2,ENST00000412025.1,ENST00000440523.1,ENST00000539637.1,ENST00000424669.1
exon_skip_3441392158655940:158656012:158674896:158675071:158683039:158683158158674896:158675071ENSG00000115170.9ENST00000410057.2,ENST00000539637.1,ENST00000413751.1
exon_skip_3441422158655940:158656012:158674896:158675071:158732307:158732352158674896:158675071ENSG00000115170.9ENST00000434821.1
exon_skip_3441542158674896:158675071:158675914:158676001:158732307:158732352158675914:158676001ENSG00000115170.9ENST00000424669.1
exon_skip_3441572158674896:158675071:158683039:158683158:158716566:158716691158683039:158683158ENSG00000115170.9ENST00000413751.1
exon_skip_3441602158675059:158675071:158683039:158683158:158732307:158732352158683039:158683158ENSG00000115170.9ENST00000539637.1
exon_skip_3441742158683039:158683158:158716566:158716691:158732307:158732352158716566:158716691ENSG00000115170.9ENST00000413751.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for ACVR1

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002636401586559381586560123UTR-3CDS
ENST000004100571586559381586560123UTR-3CDS
ENST000004348211586559381586560123UTR-3CDS
ENST000004100571586748961586750713UTR-3UTR
ENST000004348211586748961586750713UTR-3UTR
ENST000004100571586830391586831583UTR-3UTR
ENST00000263640158617391158617589In-frame
ENST00000409283158617391158617589In-frame
ENST00000410057158617391158617589In-frame
ENST00000434821158617391158617589In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002636401586559381586560123UTR-3CDS
ENST000004100571586559381586560123UTR-3CDS
ENST000004348211586559381586560123UTR-3CDS
ENST000004100571586748961586750713UTR-3UTR
ENST000004348211586748961586750713UTR-3UTR
ENST00000263640158617391158617589In-frame
ENST00000409283158617391158617589In-frame
ENST00000410057158617391158617589In-frame
ENST00000434821158617391158617589In-frame

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Infer the effects of exon skipping event on protein functional features for ACVR1

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000263640306250915861739115861758914971694355421
ENST00000409283289650915861739115861758913341531355421
ENST00000410057210150915861739115861758914061603355421
ENST00000434821287850915861739115861758913161513355421

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000263640306250915861739115861758914971694355421
ENST00000409283289650915861739115861758913341531355421
ENST00000410057210150915861739115861758914061603355421
ENST00000434821287850915861739115861758913161513355421

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q04771355421359362Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421359362Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421359362Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421359362Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421367369Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421367369Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421367369Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421367369Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q0477135542121509ChainID=PRO_0000024394;Note=Activin receptor type-1
Q0477135542121509ChainID=PRO_0000024394;Note=Activin receptor type-1
Q0477135542121509ChainID=PRO_0000024394;Note=Activin receptor type-1
Q0477135542121509ChainID=PRO_0000024394;Note=Activin receptor type-1
Q04771355421208502DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q04771355421208502DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q04771355421208502DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q04771355421208502DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q04771355421379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421384387HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421384387HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421384387HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421384387HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421396415HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421396415HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421396415HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421396415HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421356356Natural variantID=VAR_058424;Note=In FOP%3B variant phenotype. G->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs121912679,PMID:19085907
Q04771355421356356Natural variantID=VAR_058424;Note=In FOP%3B variant phenotype. G->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs121912679,PMID:19085907
Q04771355421356356Natural variantID=VAR_058424;Note=In FOP%3B variant phenotype. G->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs121912679,PMID:19085907
Q04771355421356356Natural variantID=VAR_058424;Note=In FOP%3B variant phenotype. G->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs121912679,PMID:19085907
Q04771355421375375Natural variantID=VAR_058425;Note=In FOP%3B variant phenotype. R->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs387906590,PMID:19085907
Q04771355421375375Natural variantID=VAR_058425;Note=In FOP%3B variant phenotype. R->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs387906590,PMID:19085907
Q04771355421375375Natural variantID=VAR_058425;Note=In FOP%3B variant phenotype. R->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs387906590,PMID:19085907
Q04771355421375375Natural variantID=VAR_058425;Note=In FOP%3B variant phenotype. R->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs387906590,PMID:19085907
Q04771355421147509Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q04771355421147509Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q04771355421147509Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q04771355421147509Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q04771355421363366TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421363366TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421363366TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421363366TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q04771355421359362Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421359362Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421359362Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421359362Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421367369Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421367369Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421367369Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421367369Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q0477135542121509ChainID=PRO_0000024394;Note=Activin receptor type-1
Q0477135542121509ChainID=PRO_0000024394;Note=Activin receptor type-1
Q0477135542121509ChainID=PRO_0000024394;Note=Activin receptor type-1
Q0477135542121509ChainID=PRO_0000024394;Note=Activin receptor type-1
Q04771355421208502DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q04771355421208502DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q04771355421208502DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q04771355421208502DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q04771355421379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421384387HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421384387HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421384387HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421384387HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421396415HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421396415HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421396415HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421396415HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421356356Natural variantID=VAR_058424;Note=In FOP%3B variant phenotype. G->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs121912679,PMID:19085907
Q04771355421356356Natural variantID=VAR_058424;Note=In FOP%3B variant phenotype. G->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs121912679,PMID:19085907
Q04771355421356356Natural variantID=VAR_058424;Note=In FOP%3B variant phenotype. G->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs121912679,PMID:19085907
Q04771355421356356Natural variantID=VAR_058424;Note=In FOP%3B variant phenotype. G->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs121912679,PMID:19085907
Q04771355421375375Natural variantID=VAR_058425;Note=In FOP%3B variant phenotype. R->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs387906590,PMID:19085907
Q04771355421375375Natural variantID=VAR_058425;Note=In FOP%3B variant phenotype. R->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs387906590,PMID:19085907
Q04771355421375375Natural variantID=VAR_058425;Note=In FOP%3B variant phenotype. R->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs387906590,PMID:19085907
Q04771355421375375Natural variantID=VAR_058425;Note=In FOP%3B variant phenotype. R->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19085907;Dbxref=dbSNP:rs387906590,PMID:19085907
Q04771355421147509Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q04771355421147509Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q04771355421147509Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q04771355421147509Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q04771355421363366TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421363366TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421363366TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U
Q04771355421363366TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3Q4U


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SNVs in the skipped exons for ACVR1

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A1EG-01exon_skip_344129
158655939158656012158655955158655955Frame_Shift_DelG-p.P17fs

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
NCIH1836_LUNG158617392158617589158617454158617454Missense_MutationCAp.R401M

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for ACVR1

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for ACVR1


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for ACVR1


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RelatedDrugs for ACVR1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
Q04771DB12010FostamatinibActivin receptor type-1small moleculeapproved|investigational

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RelatedDiseases for ACVR1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
ACVR1C0017638Glioma3CTD_human
ACVR1C0016037Fibrodysplasia Ossificans Progressiva2ORPHANET;UNIPROT
ACVR1C0004114Astrocytoma1CTD_human
ACVR1C0242488Acute Lung Injury1CTD_human
ACVR1C1458155Mammary Neoplasms1CTD_human