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| Open reading frame (ORF) annotation in the exon skipping event |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
| Splicing Quantitative Trait Methylation (sQTM) in the skipped exon |
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Gene summary for TNFRSF10C |
 Gene summary |
| Gene information | Gene symbol | TNFRSF10C | Gene ID | 8794 |
| Gene name | TNF receptor superfamily member 10c | |
| Synonyms | CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID | |
| Cytomap | 8p21.3 | |
| Type of gene | protein-coding | |
| Description | tumor necrosis factor receptor superfamily member 10CTNF-related apoptosis-inducing ligand receptor 3antagonist decoy receptor for TRAIL/Apo-2Lcytotoxic TRAIL receptor-3decoy TRAIL receptor without death domaindecoy receptor 1lymphocyte inhibitor of | |
| Modification date | 20180522 | |
| UniProtAcc | O14798 | |
| Context | PubMed: TNFRSF10C [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Exon skipping events across known transcript of Ensembl for TNFRSF10C from UCSC genome browser |
| Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Gene isoform structures and expression levels for TNFRSF10C |
| Expression levels of gene isoforms across TCGA. |
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| Expression levels of gene isoforms across GTEx. |
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Exon skipping events with PSIs in TCGA for TNFRSF10C |
| Information of exkip skipping event in TCGA. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_482230 | 8 | 22947660:22947801:22958149:22958197:22969232:22969338 | 22958149:22958197 | ENSG00000173535.9 | ENST00000520607.1 |
| exon_skip_482234 | 8 | 22960433:22960694:22969232:22969338:22972169:22972283 | 22969232:22969338 | ENSG00000173535.9 | ENST00000356864.3 |
| PSI values of skipped exons in TCGA. |
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Exon skipping events with PSIs in GTEx for TNFRSF10C |
| Information of exkip skipping event in GTEx |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_482234 | 8 | 22960433:22960694:22969232:22969338:22972169:22972283 | 22969232:22969338 | ENSG00000173535.9 | ENST00000356864.3 |
| PSI values of skipped exons in GTEx. |
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| * Skipped exon sequences. |
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Open reading frame (ORF) annotation in the exon skipping event for TNFRSF10C |
| Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000356864 | 22969232 | 22969338 | Frame-shift |
| Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000356864 | 22969232 | 22969338 | Frame-shift |
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Infer the effects of exon skipping event on protein functional features for TNFRSF10C |
| Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window. |
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| Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Lost protein functional features of individual exon skipping events in TCGA. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Lost protein functional features of individual exon skipping events in GTEx. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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SNVs in the skipped exons for TNFRSF10C |
| - Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window. |
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| - Differential PSIs between mutated versus non-mutated samples. |
| - Non-synonymous mutations located in the skipped exons in TCGA. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| BLCA | TCGA-DK-A6B1-01 | exon_skip_482234 | 22969233 | 22969338 | 22969274 | 22969275 | Frame_Shift_Ins | - | C | p.P35fs |
| STAD | TCGA-FP-A4BE-01 | exon_skip_482234 | 22969233 | 22969338 | 22969281 | 22969281 | Nonsense_Mutation | C | T | p.Q37* |
| STAD | TCGA-FP-A4BE-01 | exon_skip_482234 | 22969233 | 22969338 | 22969281 | 22969281 | Nonsense_Mutation | C | T | p.Q37X |
| - Depth of coverage in the three exons composing exon skipping event |
| Depth of coverage in three exons | Mutation description |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for TNFRSF10C |
| sQTL information located at the skipped exons. |
| Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TNFRSF10C |
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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TNFRSF10C |
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RelatedDrugs for TNFRSF10C |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TNFRSF10C |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| TNFRSF10C | C3495559 | Juvenile arthritis | 1 | CTD_human |
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