| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_459371 | 6 | 41653827:41653975:41654831:41654907:41655490:41655547 | 41654831:41654907 | ENSG00000112561.13 | ENST00000406563.2,ENST00000230323.4,ENST00000358871.2,ENST00000420312.1,ENST00000403298.4,ENST00000343317.6,ENST00000373033.1 |
| exon_skip_459372 | 6 | 41657468:41657549:41658400:41658655:41658738:41658780 | 41658400:41658655 | ENSG00000112561.13 | ENST00000416140.1,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000419396.1,ENST00000419574.1,ENST00000394283.1,ENST00000343317.6,ENST00000373033.1 |
| exon_skip_459375 | 6 | 41658915:41658973:41673384:41673490:41673654:41673678 | 41673384:41673490 | ENSG00000112561.13 | ENST00000445214.1 |
| exon_skip_459377 | 6 | 41658915:41658973:41700386:41700477:41701401:41701428 | 41700386:41700477 | ENSG00000112561.13 | ENST00000424495.1 |
| exon_skip_459380 | 6 | 41658915:41658973:41700386:41700505:41702637:41702798 | 41700386:41700505 | ENSG00000112561.13 | ENST00000230323.4,ENST00000420312.1 |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_459371 | 6 | 41653827:41653975:41654831:41654907:41655490:41655547 | 41654831:41654907 | ENSG00000112561.13 | ENST00000406563.2,ENST00000343317.6,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000420312.1,ENST00000373033.1 |
| exon_skip_459372 | 6 | 41657468:41657549:41658400:41658655:41658738:41658780 | 41658400:41658655 | ENSG00000112561.13 | ENST00000343317.6,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000373033.1,ENST00000394283.1,ENST00000419396.1,ENST00000416140.1,ENST00000419574.1 |
| exon_skip_459375 | 6 | 41658915:41658973:41673384:41673490:41673654:41673678 | 41673384:41673490 | ENSG00000112561.13 | ENST00000445214.1 |
| exon_skip_459377 | 6 | 41658915:41658973:41700386:41700477:41701401:41701428 | 41700386:41700477 | ENSG00000112561.13 | ENST00000424495.1 |
| exon_skip_459380 | 6 | 41658915:41658973:41700386:41700505:41702637:41702798 | 41700386:41700505 | ENSG00000112561.13 | ENST00000230323.4,ENST00000420312.1 |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| P19484 | 71 | 156 | 72 | 156 | Alternative sequence | ID=VSP_002159;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:2115126;Dbxref=PMID:15489334,PMID:2115126 |
| P19484 | 71 | 156 | 72 | 156 | Alternative sequence | ID=VSP_002159;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:2115126;Dbxref=PMID:15489334,PMID:2115126 |
| P19484 | 71 | 156 | 72 | 156 | Alternative sequence | ID=VSP_002159;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:2115126;Dbxref=PMID:15489334,PMID:2115126 |
| P19484 | 71 | 156 | 1 | 476 | Chain | ID=PRO_0000127473;Note=Transcription factor EB |
| P19484 | 71 | 156 | 1 | 476 | Chain | ID=PRO_0000127473;Note=Transcription factor EB |
| P19484 | 71 | 156 | 1 | 476 | Chain | ID=PRO_0000127473;Note=Transcription factor EB |
| P19484 | 71 | 156 | 109 | 109 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 109 | 109 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 109 | 109 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 114 | 114 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 114 | 114 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 114 | 114 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 122 | 122 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:20068231,PMID:23186163 |
| P19484 | 71 | 156 | 122 | 122 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:20068231,PMID:23186163 |
| P19484 | 71 | 156 | 122 | 122 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:20068231,PMID:23186163 |
| P19484 | 71 | 156 | 138 | 138 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 138 | 138 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 138 | 138 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 142 | 142 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 142 | 142 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 142 | 142 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 156 | 165 | Region | Note=Strong transcription activation domain;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| P19484 | 71 | 156 | 156 | 165 | Region | Note=Strong transcription activation domain;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| P19484 | 71 | 156 | 156 | 165 | Region | Note=Strong transcription activation domain;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| P19484 | 71 | 156 | 106 | 106 | Sequence conflict | Note=A->AA;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 106 | 106 | Sequence conflict | Note=A->AA;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 106 | 106 | Sequence conflict | Note=A->AA;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 113 | 141 | Sequence conflict | Note=GSPKPPPAASPGVRAGHVLSSSAGNSAPN->ALRNPHQPPPQGCELDTCCPPPLATVLPI;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 113 | 141 | Sequence conflict | Note=GSPKPPPAASPGVRAGHVLSSSAGNSAPN->ALRNPHQPPPQGCELDTCCPPPLATVLPI;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 113 | 141 | Sequence conflict | Note=GSPKPPPAASPGVRAGHVLSSSAGNSAPN->ALRNPHQPPPQGCELDTCCPPPLATVLPI;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| P19484 | 71 | 156 | 72 | 156 | Alternative sequence | ID=VSP_002159;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:2115126;Dbxref=PMID:15489334,PMID:2115126 |
| P19484 | 71 | 156 | 72 | 156 | Alternative sequence | ID=VSP_002159;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:2115126;Dbxref=PMID:15489334,PMID:2115126 |
| P19484 | 71 | 156 | 72 | 156 | Alternative sequence | ID=VSP_002159;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:2115126;Dbxref=PMID:15489334,PMID:2115126 |
| P19484 | 71 | 156 | 1 | 476 | Chain | ID=PRO_0000127473;Note=Transcription factor EB |
| P19484 | 71 | 156 | 1 | 476 | Chain | ID=PRO_0000127473;Note=Transcription factor EB |
| P19484 | 71 | 156 | 1 | 476 | Chain | ID=PRO_0000127473;Note=Transcription factor EB |
| P19484 | 71 | 156 | 109 | 109 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 109 | 109 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 109 | 109 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 114 | 114 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 114 | 114 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 114 | 114 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9R210 |
| P19484 | 71 | 156 | 122 | 122 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:20068231,PMID:23186163 |
| P19484 | 71 | 156 | 122 | 122 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:20068231,PMID:23186163 |
| P19484 | 71 | 156 | 122 | 122 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:20068231,PMID:23186163 |
| P19484 | 71 | 156 | 138 | 138 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 138 | 138 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 138 | 138 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 142 | 142 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 142 | 142 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 142 | 142 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231 |
| P19484 | 71 | 156 | 156 | 165 | Region | Note=Strong transcription activation domain;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| P19484 | 71 | 156 | 156 | 165 | Region | Note=Strong transcription activation domain;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| P19484 | 71 | 156 | 156 | 165 | Region | Note=Strong transcription activation domain;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| P19484 | 71 | 156 | 106 | 106 | Sequence conflict | Note=A->AA;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 106 | 106 | Sequence conflict | Note=A->AA;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 106 | 106 | Sequence conflict | Note=A->AA;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 113 | 141 | Sequence conflict | Note=GSPKPPPAASPGVRAGHVLSSSAGNSAPN->ALRNPHQPPPQGCELDTCCPPPLATVLPI;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 113 | 141 | Sequence conflict | Note=GSPKPPPAASPGVRAGHVLSSSAGNSAPN->ALRNPHQPPPQGCELDTCCPPPLATVLPI;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| P19484 | 71 | 156 | 113 | 141 | Sequence conflict | Note=GSPKPPPAASPGVRAGHVLSSSAGNSAPN->ALRNPHQPPPQGCELDTCCPPPLATVLPI;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
| Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
| exon_skip_459372 | 6 | 41657468:41657549:41658400:41658655:41658738:41658780 | 41658400:41658655 | ENST00000416140.1,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000419396.1,ENST00000419574.1,ENST00000394283.1,ENST00000343317.6,ENST00000373033.1 | BRCA | rs2273068 | chr6:41658566 | A/G | 2.99e-04
|
| exon_skip_459372 | 6 | 41657468:41657549:41658400:41658655:41658738:41658780 | 41658400:41658655 | ENST00000416140.1,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000419396.1,ENST00000419574.1,ENST00000394283.1,ENST00000343317.6,ENST00000373033.1 | BRCA | rs2273068 | chr6:41658566 | A/G | 1.25e-03
|
| exon_skip_459372 | 6 | 41657468:41657549:41658400:41658655:41658738:41658780 | 41658400:41658655 | ENST00000416140.1,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000419396.1,ENST00000419574.1,ENST00000394283.1,ENST00000343317.6,ENST00000373033.1 | LGG | rs2273068 | chr6:41658566 | A/G | 2.40e-06
|
| exon_skip_459372 | 6 | 41657468:41657549:41658400:41658655:41658738:41658780 | 41658400:41658655 | ENST00000416140.1,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000419396.1,ENST00000419574.1,ENST00000394283.1,ENST00000343317.6,ENST00000373033.1 | OV | rs2273068 | chr6:41658566 | A/G | 9.20e-04
|
| exon_skip_459372 | 6 | 41657468:41657549:41658400:41658655:41658738:41658780 | 41658400:41658655 | ENST00000416140.1,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000419396.1,ENST00000419574.1,ENST00000394283.1,ENST00000343317.6,ENST00000373033.1 | OV | rs2273068 | chr6:41658566 | A/G | 1.77e-03
|
| exon_skip_459372 | 6 | 41657468:41657549:41658400:41658655:41658738:41658780 | 41658400:41658655 | ENST00000416140.1,ENST00000230323.4,ENST00000358871.2,ENST00000403298.4,ENST00000419396.1,ENST00000419574.1,ENST00000394283.1,ENST00000343317.6,ENST00000373033.1 | THCA | rs2273068 | chr6:41658566 | A/G | 3.53e-03
|