ExonSkipDB Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

Gene summary

leaf

Gene structures and expression levels

leaf

Exon skipping events with PSIs in TCGA

leaf

Exon skipping events with PSIs in GTEx

leaf

Open reading frame (ORF) annotation in the exon skipping event

leaf

Exon skipping events in the canonical protein sequence

leaf

SNVs in the skipped exons with depth of coverage

leaf

Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

leaf

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

leaf

Related drugs with this gene

leaf

Related diseases with this gene

Gene summary for STK10

check button Gene summary
Gene informationGene symbol

STK10

Gene ID

6793

Gene nameserine/threonine kinase 10
SynonymsLOK|PRO2729
Cytomap

5q35.1

Type of geneprotein-coding
Descriptionserine/threonine-protein kinase 10lymphocyte-oriented kinase
Modification date20180523
UniProtAcc

O94804

ContextPubMed: STK10 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
STK10

GO:0046777

protein autophosphorylation

12639966|18239682


Top

Exon skipping events across known transcript of Ensembl for STK10 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

Top

Gene isoform structures and expression levels for STK10

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


Top

Exon skipping events with PSIs in TCGA for STK10

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_4461925171471689:171472026:171472429:171472484:171479932:171480046171472429:171472484ENSG00000072786.8ENST00000520476.1
exon_skip_4461935171481572:171481698:171482591:171482780:171484352:171484477171482591:171482780ENSG00000072786.8ENST00000520476.1,ENST00000176763.5
exon_skip_4461945171509964:171510088:171517235:171517366:171520415:171520581171517235:171517366ENSG00000072786.8ENST00000176763.5
exon_skip_4461985171517235:171517366:171520415:171520964:171523429:171523564171520415:171520964ENSG00000072786.8ENST00000176763.5
exon_skip_4462045171520700:171520964:171523429:171523564:171532659:171532741171523429:171523564ENSG00000072786.8ENST00000176763.5
exon_skip_4462055171532661:171532741:171533623:171533818:171534783:171534856171533623:171533818ENSG00000072786.8ENST00000517524.1,ENST00000522936.1,ENST00000176763.5
exon_skip_4462065171533665:171533818:171534783:171534856:171544484:171544634171534783:171534856ENSG00000072786.8ENST00000176763.5
exon_skip_4462075171544484:171544634:171554376:171554425:171583627:171583729171554376:171554425ENSG00000072786.8ENST00000176763.5,ENST00000519710.1

check button PSI values of skipped exons in TCGA.
psi tcga

Top

Exon skipping events with PSIs in GTEx for STK10

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_4461925171471689:171472026:171472429:171472484:171479932:171480046171472429:171472484ENSG00000072786.8ENST00000520476.1
exon_skip_4461935171481572:171481698:171482591:171482780:171484352:171484477171482591:171482780ENSG00000072786.8ENST00000176763.5,ENST00000520476.1
exon_skip_4461945171509964:171510088:171517235:171517366:171520415:171520581171517235:171517366ENSG00000072786.8ENST00000176763.5
exon_skip_4461985171517235:171517366:171520415:171520964:171523429:171523564171520415:171520964ENSG00000072786.8ENST00000176763.5
exon_skip_4462045171520700:171520964:171523429:171523564:171532659:171532741171523429:171523564ENSG00000072786.8ENST00000176763.5
exon_skip_4462055171532661:171532741:171533623:171533818:171534783:171534856171533623:171533818ENSG00000072786.8ENST00000176763.5,ENST00000517524.1,ENST00000522936.1
exon_skip_4462065171533665:171533818:171534783:171534856:171544484:171544634171534783:171534856ENSG00000072786.8ENST00000176763.5
exon_skip_4462075171544484:171544634:171554376:171554425:171583627:171583729171554376:171554425ENSG00000072786.8ENST00000176763.5,ENST00000519710.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

Top

Open reading frame (ORF) annotation in the exon skipping event for STK10

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000176763171517235171517366Frame-shift
ENST00000176763171534783171534856Frame-shift
ENST00000176763171554376171554425Frame-shift
ENST00000176763171482591171482780In-frame
ENST00000176763171520415171520964In-frame
ENST00000176763171523429171523564In-frame
ENST00000176763171533623171533818In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000176763171517235171517366Frame-shift
ENST00000176763171534783171534856Frame-shift
ENST00000176763171554376171554425Frame-shift
ENST00000176763171482591171482780In-frame
ENST00000176763171520415171520964In-frame
ENST00000176763171523429171523564In-frame
ENST00000176763171533623171533818In-frame

Top

Infer the effects of exon skipping event on protein functional features for STK10

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000017676360779681715336231715338189381132198262
ENST00000176763607796817152342917152356412151349290335
ENST00000176763607796817152041517152096413501898335518
ENST00000176763607796817148259117148278026822870779842

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000017676360779681715336231715338189381132198262
ENST00000176763607796817152342917152356412151349290335
ENST00000176763607796817152041517152096413501898335518
ENST00000176763607796817148259117148278026822870779842

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
O948041982621968ChainID=PRO_0000086697;Note=Serine/threonine-protein kinase 10
O9480419826236294DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
O94804198262196198HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262201207HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262213216HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262217232HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262242251HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262260262HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262175224RegionNote=Activation segment
O94804198262208211TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262236239TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O948042903351968ChainID=PRO_0000086697;Note=Serine/threonine-protein kinase 10
O9480429033536294DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
O94804290335301314HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804290335322322Natural variantID=VAR_041132;Note=R->W;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs56214442,PMID:17344846
O94804290335317317Sequence conflictNote=E->G;Ontology_term=ECO:0000305;evidence=ECO:0000305
O94804290335292296TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O948043355181968ChainID=PRO_0000086697;Note=Serine/threonine-protein kinase 10
O94804335518438438Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:16964243,ECO:0000244|PubMed:18088087,ECO:0000244|PubMed:18691976,ECO:0000244|PubMed:19367720,ECO:0000244|PubMe
O94804335518450450Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
O94804335518454454Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
O94804335518485485Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24275569;Dbxref=PMID:24275569
O94804335518514514Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:23186163,ECO:0000244|PubMed:24275569;Dbxref=PMID:23186163,PMID:24275569
O94804335518336336Natural variantID=VAR_041133;Note=T->I;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs55972616,PMID:17344846
O94804335518467467Natural variantID=VAR_041134;Note=N->S;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs56063773,PMID:17344846
O94804335518480480Natural variantID=VAR_051671;Note=P->L;Dbxref=dbSNP:rs34505340
O948047798421968ChainID=PRO_0000086697;Note=Serine/threonine-protein kinase 10
O94804779842573947Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
O94804779842750884Compositional biasNote=Gln-rich


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
O948041982621968ChainID=PRO_0000086697;Note=Serine/threonine-protein kinase 10
O9480419826236294DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
O94804198262196198HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262201207HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262213216HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262217232HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262242251HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262260262HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262175224RegionNote=Activation segment
O94804198262208211TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804198262236239TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O948042903351968ChainID=PRO_0000086697;Note=Serine/threonine-protein kinase 10
O9480429033536294DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
O94804290335301314HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O94804290335322322Natural variantID=VAR_041132;Note=R->W;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs56214442,PMID:17344846
O94804290335317317Sequence conflictNote=E->G;Ontology_term=ECO:0000305;evidence=ECO:0000305
O94804290335292296TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:6EIM
O948043355181968ChainID=PRO_0000086697;Note=Serine/threonine-protein kinase 10
O94804335518438438Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:16964243,ECO:0000244|PubMed:18088087,ECO:0000244|PubMed:18691976,ECO:0000244|PubMed:19367720,ECO:0000244|PubMe
O94804335518450450Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
O94804335518454454Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
O94804335518485485Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24275569;Dbxref=PMID:24275569
O94804335518514514Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:23186163,ECO:0000244|PubMed:24275569;Dbxref=PMID:23186163,PMID:24275569
O94804335518336336Natural variantID=VAR_041133;Note=T->I;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs55972616,PMID:17344846
O94804335518467467Natural variantID=VAR_041134;Note=N->S;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs56063773,PMID:17344846
O94804335518480480Natural variantID=VAR_051671;Note=P->L;Dbxref=dbSNP:rs34505340
O948047798421968ChainID=PRO_0000086697;Note=Serine/threonine-protein kinase 10
O94804779842573947Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
O94804779842750884Compositional biasNote=Gln-rich


Top

SNVs in the skipped exons for STK10

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
STK10_SKCM_exon_skip_446198_psi_boxplot.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
STADTCGA-BR-4184-01exon_skip_446194
171517236171517366171517345171517345Frame_Shift_DelT-p.T526fs
STADTCGA-CG-5733-01exon_skip_446194
171517236171517366171517345171517345Frame_Shift_DelT-p.T526fs
LUSCTCGA-33-4566-01exon_skip_446205
171533624171533818171533644171533644Frame_Shift_DelC-p.T256fs
LIHCTCGA-DD-A1EG-01exon_skip_446205
171533624171533818171533700171533700Frame_Shift_DelG-p.H238fs
LIHCTCGA-DD-A1EG-01exon_skip_446205
171533624171533818171533761171533761Frame_Shift_DelT-p.K217fs
KICHTCGA-KN-8428-01exon_skip_446193
171482592171482780171482625171482626Frame_Shift_Ins-Cp.G831fs
STADTCGA-CG-5726-01exon_skip_446194
171517236171517366171517344171517345Frame_Shift_Ins-Tp.T526fs
STADTCGA-CG-5726-01exon_skip_446194
171517236171517366171517345171517346Frame_Shift_Ins-Tp.T526fs
COADTCGA-G4-6586-01exon_skip_446194
171517236171517366171517246171517246Nonsense_MutationTAp.R559X
SKCMTCGA-D3-A8GQ-06exon_skip_446198
171520416171520964171520703171520703Nonsense_MutationGAp.Q423*
SKCMTCGA-FS-A4FC-06exon_skip_446198
171520416171520964171520703171520703Nonsense_MutationGAp.Q423*
SKCMTCGA-FS-A4FC-06exon_skip_446198
171520416171520964171520703171520703Nonsense_MutationGAp.Q423X
STADTCGA-HU-A4GQ-01exon_skip_446194
171517236171517366171517367171517367Splice_SiteCA.
STADTCGA-HU-A4GQ-01exon_skip_446194
171517236171517366171517367171517367Splice_SiteCAp.D519_splice

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
STK10_171517235_171517366_171520415_171520964_171523429_171523564_TCGA-D3-A8GQ-06Sample: TCGA-D3-A8GQ-06
Cancer type: SKCM
ESID: exon_skip_446198
Skipped exon start: 171520416
Skipped exon end: 171520964
Mutation start: 171520703
Mutation end: 171520703
Mutation type: Nonsense_Mutation
Reference seq: G
Mutation seq: A
AAchange: p.Q423*
exon_skip_446198_SKCM_TCGA-D3-A8GQ-06.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
NO10_CENTRAL_NERVOUS_SYSTEM171517236171517366171517354171517355Frame_Shift_DelAC-p.Y523fs
HCC202_BREAST171520416171520964171520895171520898Frame_Shift_DelCGAG-p.LE358fs
HCC202_BREAST171520416171520964171520895171520895Frame_Shift_DelC-p.E360fs
HEC151_ENDOMETRIUM171554377171554425171554400171554400Frame_Shift_DelC-p.G116fs
HCC202_BREAST171520416171520964171520897171520899In_Frame_DelAGA-p.L358del
SMZ1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE171482592171482780171482608171482608Missense_MutationCTp.R837H
CW2_LARGE_INTESTINE171482592171482780171482632171482632Missense_MutationCTp.G829D
HEC108_ENDOMETRIUM171482592171482780171482708171482708Missense_MutationCAp.A804S
BICR18_UPPER_AERODIGESTIVE_TRACT171482592171482780171482742171482742Missense_MutationTCp.I792M
SNU1040_LARGE_INTESTINE171482592171482780171482761171482761Missense_MutationCTp.R786H
HEC108_ENDOMETRIUM171482592171482780171482777171482777Missense_MutationGAp.R781W
SW1271_LUNG171517236171517366171517260171517260Missense_MutationTGp.K554T
SNU1040_LARGE_INTESTINE171517236171517366171517318171517318Missense_MutationCTp.V535M
SNU175_LARGE_INTESTINE171517236171517366171517329171517329Missense_MutationCTp.R531H
SNU349_KIDNEY171517236171517366171517330171517330Missense_MutationGAp.R531C
DG75_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE171520416171520964171520511171520511Missense_MutationACp.C487G
HEC59_ENDOMETRIUM171520416171520964171520564171520564Missense_MutationCTp.S469N
SNGM_ENDOMETRIUM171520416171520964171520606171520606Missense_MutationCTp.S455N
PL4_PANCREAS171520416171520964171520645171520645Missense_MutationTCp.N442S
TK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE171520416171520964171520729171520729Missense_MutationCTp.R414Q
NCIH1184_LUNG171520416171520964171520879171520879Missense_MutationGAp.T364I
WM1552C_SKIN171520416171520964171520890171520890Missense_MutationCAp.E360D
A2780_OVARY171520416171520964171520907171520907Missense_MutationCTp.D355N
CAL51_BREAST171523430171523564171523435171523435Missense_MutationCTp.A334T
SNU1040_LARGE_INTESTINE171533624171533818171533664171533664Missense_MutationCTp.A250T
SNUC5_LARGE_INTESTINE171533624171533818171533717171533717Missense_MutationTGp.Q232P
639V_URINARY_TRACT171533624171533818171533728171533728Missense_MutationACp.I228M
CAL39_VULVA171533624171533818171533739171533739Missense_MutationTCp.I225V
SNU175_LARGE_INTESTINE171554377171554425171554389171554389Missense_MutationCTp.A120T
MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE171482592171482780171482765171482765Nonsense_MutationGAp.Q785*
RERFLCAD2_LUNG171520416171520964171520934171520934Nonsense_MutationCAp.E346*
PECAPJ15_UPPER_AERODIGESTIVE_TRACT171520416171520964171520417171520417Splice_SiteTGp.K518T

Top

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for STK10

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

Top

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for STK10


Top

Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for STK10


Top

RelatedDrugs for STK10

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
O94804DB12010FostamatinibSerine/threonine-protein kinase 10small moleculeapproved|investigational

Top

RelatedDiseases for STK10

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
STK10C0023893Liver Cirrhosis, Experimental1CTD_human
STK10C1336708Testicular Germ Cell Tumor1UNIPROT