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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for SRC

check button Gene summary
Gene informationGene symbol

SRC

Gene ID

6714

Gene nameSRC proto-oncogene, non-receptor tyrosine kinase
SynonymsASV|SRC1|THC6|c-SRC|p60-Src
Cytomap

20q11.23

Type of geneprotein-coding
Descriptionproto-oncogene tyrosine-protein kinase Srcproto-oncogene c-Srcprotooncogene SRC, Rous sarcomatyrosine kinase pp60c-srctyrosine-protein kinase SRC-1v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
Modification date20180527
UniProtAcc

P12931

ContextPubMed: SRC [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SRC

GO:0018108

peptidyl-tyrosine phosphorylation

12051764|22732588

SRC

GO:0035556

intracellular signal transduction

15248232

SRC

GO:0046777

protein autophosphorylation

16441665

SRC

GO:0071902

positive regulation of protein serine/threonine kinase activity

19059439


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Exon skipping events across known transcript of Ensembl for SRC from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for SRC

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for SRC

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3515992035993606:35993680:36011021:36011190:36012552:3601280636011021:36011190ENSG00000197122.7ENST00000373578.2
exon_skip_3516102036011091:36011189:36012552:36012806:36014477:3601457736012552:36012806ENSG00000197122.7ENST00000360723.4,ENST00000445403.1,ENST00000358208.4
exon_skip_3516152036014477:36014577:36014862:36014880:36022297:3602239636014862:36014880ENSG00000197122.7ENST00000360723.4,ENST00000373558.2
exon_skip_3516162036014477:36014577:36022297:36022396:36022576:3602268036022297:36022396ENSG00000197122.7ENST00000445403.1,ENST00000373567.2,ENST00000373578.2,ENST00000358208.4
exon_skip_3516192036024564:36024714:36026101:36026257:36028517:3602869736026101:36026257ENSG00000197122.7ENST00000360723.4,ENST00000445403.1,ENST00000373567.2,ENST00000373558.2,ENST00000373578.2,ENST00000358208.4
exon_skip_3516222036028653:36028697:36030004:36030081:36030837:3603099136030004:36030081ENSG00000197122.7ENST00000477066.1,ENST00000360723.4,ENST00000445403.1,ENST00000373567.2,ENST00000373558.2,ENST00000373578.2,ENST00000358208.4

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for SRC

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3515992035993606:35993680:36011021:36011190:36012552:3601280636011021:36011190ENSG00000197122.7ENST00000373578.2
exon_skip_3516102036011091:36011189:36012552:36012806:36014477:3601457736012552:36012806ENSG00000197122.7ENST00000445403.1,ENST00000360723.4,ENST00000358208.4
exon_skip_3516152036014477:36014577:36014862:36014880:36022297:3602239636014862:36014880ENSG00000197122.7ENST00000360723.4,ENST00000373558.2
exon_skip_3516192036024564:36024714:36026101:36026257:36028517:3602869736026101:36026257ENSG00000197122.7ENST00000445403.1,ENST00000373578.2,ENST00000360723.4,ENST00000358208.4,ENST00000373567.2,ENST00000373558.2
exon_skip_3516222036028653:36028697:36030004:36030081:36030837:3603099136030004:36030081ENSG00000197122.7ENST00000445403.1,ENST00000373578.2,ENST00000360723.4,ENST00000358208.4,ENST00000373567.2,ENST00000373558.2,ENST00000477066.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for SRC

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000035820836012552360128065CDS-5UTR
ENST0000037357836011021360111905UTR-5UTR
ENST000003582083603000436030081Frame-shift
ENST000003735673603000436030081Frame-shift
ENST000003735783603000436030081Frame-shift
ENST000003582083602229736022396In-frame
ENST000003735673602229736022396In-frame
ENST000003735783602229736022396In-frame
ENST000003582083602610136026257In-frame
ENST000003735673602610136026257In-frame
ENST000003735783602610136026257In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000035820836012552360128065CDS-5UTR
ENST0000037357836011021360111905UTR-5UTR
ENST000003582083603000436030081Frame-shift
ENST000003735673603000436030081Frame-shift
ENST000003735783603000436030081Frame-shift
ENST000003582083602610136026257In-frame
ENST000003735673602610136026257In-frame
ENST000003735783602610136026257In-frame

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Infer the effects of exon skipping event on protein functional features for SRC

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000035820837655363602229736022396453551117149
ENST0000037356743385363602229736022396390488117149
ENST0000037357846485363602229736022396700798117149
ENST0000035820837655363602610136026257806961234286
ENST0000037356743385363602610136026257743898234286
ENST000003735784648536360261013602625710531208234286

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000035820837655363602610136026257806961234286
ENST0000037356743385363602610136026257743898234286
ENST000003735784648536360261013602625710531208234286

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P12931117149117117Alternative sequenceID=VSP_012134;Note=In isoform 2. T->TRKVDVR;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2681803;Dbxref=PMID:2681803
P12931117149117117Alternative sequenceID=VSP_012134;Note=In isoform 2. T->TRKVDVR;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2681803;Dbxref=PMID:2681803
P12931117149117117Alternative sequenceID=VSP_012134;Note=In isoform 2. T->TRKVDVR;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2681803;Dbxref=PMID:2681803
P12931117149118126Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149118126Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149118126Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149132136Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149132136Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149132136Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149140142Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149140142Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149140142Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P129311171492536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P129311171492536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P129311171492536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P1293111714984145DomainNote=SH3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00192
P1293111714984145DomainNote=SH3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00192
P1293111714984145DomainNote=SH3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00192
P12931117149137139HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149137139HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149137139HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149146148HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149146148HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149146148HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149127129TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149127129TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931117149127129TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286240242Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286240242Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286240242Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286256259Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286256259Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286256259Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286270278Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286270278Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286270278Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286283289Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286283289Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286283289Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P129312342862536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P129312342862536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P129312342862536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P12931234286151248DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P12931234286151248DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P12931234286151248DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P12931234286270523DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P12931234286270523DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P12931234286270523DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P12931234286267269HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286267269HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286267269HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286237237Natural variantID=VAR_041830;Note=A->T;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs34881773,PMID:17344846
P12931234286237237Natural variantID=VAR_041830;Note=A->T;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs34881773,PMID:17344846
P12931234286237237Natural variantID=VAR_041830;Note=A->T;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs34881773,PMID:17344846
P12931234286276284Nucleotide bindingNote=ATP
P12931234286276284Nucleotide bindingNote=ATP
P12931234286276284Nucleotide bindingNote=ATP


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P12931234286240242Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286240242Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286240242Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286256259Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286256259Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286256259Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286270278Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286270278Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286270278Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286283289Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286283289Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286283289Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P129312342862536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P129312342862536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P129312342862536ChainID=PRO_0000088141;Note=Proto-oncogene tyrosine-protein kinase Src
P12931234286151248DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P12931234286151248DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P12931234286151248DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P12931234286270523DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P12931234286270523DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P12931234286270523DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P12931234286267269HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286267269HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286267269HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1FMK
P12931234286237237Natural variantID=VAR_041830;Note=A->T;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs34881773,PMID:17344846
P12931234286237237Natural variantID=VAR_041830;Note=A->T;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs34881773,PMID:17344846
P12931234286237237Natural variantID=VAR_041830;Note=A->T;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs34881773,PMID:17344846
P12931234286276284Nucleotide bindingNote=ATP
P12931234286276284Nucleotide bindingNote=ATP
P12931234286276284Nucleotide bindingNote=ATP


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SNVs in the skipped exons for SRC

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
STADTCGA-FP-A4BE-01exon_skip_351610
36012553360128063601278436012784Frame_Shift_DelG-p.P76fs

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
KM12_LARGE_INTESTINE36026102360262573602616536026166Frame_Shift_DelAG-p.Q256fs
BICR18_UPPER_AERODIGESTIVE_TRACT36012553360128063601272836012730In_Frame_DelGCC-p.A59del
BFTC905_URINARY_TRACT36012553360128063601260936012609Missense_MutationTGp.L18R
CAOV4_OVARY36012553360128063601260936012609Missense_MutationTGp.L18R
HSC3_UPPER_AERODIGESTIVE_TRACT36012553360128063601260936012609Missense_MutationTGp.L18R
CHP126_AUTONOMIC_GANGLIA36012553360128063601262936012629Missense_MutationCGp.H25D
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE36012553360128063601262936012629Missense_MutationCTp.H25Y
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE36012553360128063601265136012651Missense_MutationTCp.F32S
CORL303_LUNG36012553360128063601265136012651Missense_MutationTCp.F32S
CROAP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE36012553360128063601265136012651Missense_MutationTCp.F32S
TYKNU_OVARY36012553360128063601265136012651Missense_MutationTCp.F32S
HSC2_UPPER_AERODIGESTIVE_TRACT36012553360128063601266536012665Missense_MutationACp.T37P
TYKNU_OVARY36012553360128063601266536012665Missense_MutationACp.T37P
MFE296_ENDOMETRIUM36012553360128063601279836012798Missense_MutationCAp.P81Q
HT115_LARGE_INTESTINE36012553360128063601280336012803Missense_MutationGTp.A83S
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE36022298360223963602236536022365Missense_MutationGAp.V140M
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE36026102360262573602614736026147Missense_MutationCTp.T250M
HCC2450_LUNG36026102360262573602616436026164Missense_MutationCGp.Q256E
MFE319_ENDOMETRIUM36026102360262573602616536026165Missense_MutationAGp.Q256R
BICR18_UPPER_AERODIGESTIVE_TRACT36012553360128063601280536012805Splice_SiteCAp.A83A

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for SRC

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for SRC


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for SRC


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RelatedDrugs for SRC

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
P12931DB06616BosutinibProto-oncogene tyrosine-protein kinase Srcsmall moleculeapproved
P12931DB09079NintedanibProto-oncogene tyrosine-protein kinase Srcsmall moleculeapproved
P12931DB01254DasatinibProto-oncogene tyrosine-protein kinase Srcsmall moleculeapproved|investigational
P12931DB08901PonatinibProto-oncogene tyrosine-protein kinase Srcsmall moleculeapproved|investigational
P12931DB12010FostamatinibProto-oncogene tyrosine-protein kinase Srcsmall moleculeapproved|investigational
P12931DB04272Citric AcidProto-oncogene tyrosine-protein kinase Srcsmall moleculeapproved|nutraceutical|vet_approved

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RelatedDiseases for SRC

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
SRCC0005695Bladder Neoplasm2CTD_human
SRCC0027626Neoplasm Invasiveness2CTD_human
SRCC0009319Colitis1CTD_human
SRCC0009375Colonic Neoplasms1CTD_human
SRCC0018800Cardiomegaly1CTD_human
SRCC0038220Status Epilepticus1CTD_human
SRCC0085548Autosomal Recessive Polycystic Kidney Disease1CTD_human
SRCC1458155Mammary Neoplasms1CTD_human