ExonSkipDB: functional annotation of exon skipping event in human

Gene summary for RAP1GDS1

Gene summary

Gene information	Gene symbol	RAP1GDS1
	Gene ID	5910
	Gene name	Rap1 GTPase-GDP dissociation stimulator 1
	Synonyms	GDS1\|SmgGDS
	Cytomap	4q23
	Type of gene	protein-coding
	Description	rap1 GTPase-GDP dissociation stimulator 1RAP1, GTP-GDP dissociation stimulator 1SMG GDS proteinSMG P21 stimulatory GDP/GTP exchange proteinexchange factor smgGDS
	Modification date	20180523
	UniProtAcc	P52306
	Context	PubMed: RAP1GDS1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

Top

Exon skipping events across known transcript of Ensembl for RAP1GDS1 from UCSC genome browser

Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Top

Gene isoform structures and expression levels for RAP1GDS1

Expression levels of gene isoforms across TCGA.

Expression levels of gene isoforms across GTEx.

Top

Exon skipping events with PSIs in TCGA for RAP1GDS1

Information of exkip skipping event in TCGA.

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_425236	4	99182668:99182720:99214555:99214666:99264289:99264412	99214555:99214666	ENSG00000138698.10	ENST00000264572.7,ENST00000380158.4,ENST00000515187.1,ENST00000453712.2,ENST00000339360.5,ENST00000507303.1,ENST00000511212.1,ENST00000512857.1
exon_skip_425237	4	99182668:99182720:99214558:99214666:99264289:99264412	99214558:99214666	ENSG00000138698.10	ENST00000514122.1,ENST00000408927.3,ENST00000505378.1,ENST00000510870.1,ENST00000511379.1,ENST00000408900.3
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENSG00000138698.10	ENST00000508490.1,ENST00000503667.1
exon_skip_425239	4	99214558:99214666:99264289:99264412:99273626:99273718	99264289:99264412	ENSG00000138698.10	ENST00000408927.3,ENST00000505378.1,ENST00000264572.7,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000507303.1,ENST00000511379.1,ENST00000408900.3,ENST00000512857.1
exon_skip_425240	4	99214558:99214666:99264289:99264470:99273626:99273718	99264289:99264470	ENSG00000138698.10	ENST00000510870.1,ENST00000515187.1
exon_skip_425241	4	99264289:99264412:99273626:99273752:99300167:99300314	99273626:99273752	ENSG00000138698.10	ENST00000408927.3,ENST00000505378.1,ENST00000453712.2,ENST00000339360.5,ENST00000507303.1,ENST00000511379.1
exon_skip_425243	4	99264289:99264412:99273626:99273752:99313102:99313140	99273626:99273752	ENSG00000138698.10	ENST00000380158.4,ENST00000408900.3
exon_skip_425244	4	99264289:99264412:99300167:99300314:99313102:99313140	99300167:99300314	ENSG00000138698.10	ENST00000511212.1
exon_skip_425247	4	99264289:99264470:99273626:99273752:99313102:99313140	99273626:99273752	ENSG00000138698.10	ENST00000510870.1
exon_skip_425249	4	99273663:99273752:99300167:99300314:99308586:99308654	99300167:99300314	ENSG00000138698.10	ENST00000503745.1
exon_skip_425250	4	99273663:99273752:99300167:99300314:99313102:99313140	99300167:99300314	ENSG00000138698.10	ENST00000408927.3,ENST00000505378.1,ENST00000508213.1,ENST00000453712.2,ENST00000339360.5,ENST00000507303.1
exon_skip_425255	4	99273663:99273752:99308586:99308658:99313102:99313140	99308586:99308658	ENSG00000138698.10	ENST00000512857.1
exon_skip_425256	4	99273663:99273752:99313102:99313231:99325627:99325737	99313102:99313231	ENSG00000138698.10	ENST00000380158.4,ENST00000408900.3
exon_skip_425258	4	99300309:99300314:99308586:99308654:99313102:99313140	99308586:99308654	ENSG00000138698.10	ENST00000503745.1
exon_skip_425260	4	99300309:99300314:99313102:99313231:99325627:99325737	99313102:99313231	ENSG00000138698.10	ENST00000408927.3,ENST00000453712.2,ENST00000339360.5
exon_skip_425261	4	99313102:99313231:99325627:99325753:99337895:99338039	99325627:99325753	ENSG00000138698.10	ENST00000408927.3,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000408900.3
exon_skip_425262	4	99325627:99325753:99337895:99338039:99338517:99338649	99337895:99338039	ENSG00000138698.10	ENST00000408927.3,ENST00000264572.7,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000408900.3
exon_skip_425265	4	99339807:99339942:99341169:99341295:99342405:99342434	99341169:99341295	ENSG00000138698.10	ENST00000408927.3,ENST00000264572.7,ENST00000509501.1,ENST00000380158.4,ENST00000339360.5,ENST00000408900.3
exon_skip_425266	4	99339807:99339942:99341169:99341295:99342408:99342545	99341169:99341295	ENSG00000138698.10	ENST00000453712.2
exon_skip_425267	4	99355086:99355213:99358090:99358219:99363140:99363268	99358090:99358219	ENSG00000138698.10	ENST00000408927.3,ENST00000264572.7,ENST00000380158.4,ENST00000453712.2,ENST00000339360.5,ENST00000408900.3

PSI values of skipped exons in TCGA.

Top

Exon skipping events with PSIs in GTEx for RAP1GDS1

Information of exkip skipping event in GTEx

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_425236	4	99182668:99182720:99214555:99214666:99264289:99264412	99214555:99214666	ENSG00000138698.10	ENST00000380158.4,ENST00000264572.7,ENST00000512857.1,ENST00000453712.2,ENST00000515187.1,ENST00000511212.1,ENST00000507303.1,ENST00000339360.5
exon_skip_425237	4	99182668:99182720:99214558:99214666:99264289:99264412	99214558:99214666	ENSG00000138698.10	ENST00000505378.1,ENST00000408927.3,ENST00000511379.1,ENST00000514122.1,ENST00000510870.1,ENST00000408900.3
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENSG00000138698.10	ENST00000503667.1,ENST00000508490.1
exon_skip_425239	4	99214558:99214666:99264289:99264412:99273626:99273718	99264289:99264412	ENSG00000138698.10	ENST00000380158.4,ENST00000264572.7,ENST00000505378.1,ENST00000408927.3,ENST00000512857.1,ENST00000511379.1,ENST00000453712.2,ENST00000507303.1,ENST00000408900.3,ENST00000339360.5
exon_skip_425240	4	99214558:99214666:99264289:99264470:99273626:99273718	99264289:99264470	ENSG00000138698.10	ENST00000515187.1,ENST00000510870.1
exon_skip_425241	4	99264289:99264412:99273626:99273752:99300167:99300314	99273626:99273752	ENSG00000138698.10	ENST00000505378.1,ENST00000408927.3,ENST00000511379.1,ENST00000453712.2,ENST00000507303.1,ENST00000339360.5
exon_skip_425243	4	99264289:99264412:99273626:99273752:99313102:99313140	99273626:99273752	ENSG00000138698.10	ENST00000380158.4,ENST00000408900.3
exon_skip_425244	4	99264289:99264412:99300167:99300314:99313102:99313140	99300167:99300314	ENSG00000138698.10	ENST00000511212.1
exon_skip_425247	4	99264289:99264470:99273626:99273752:99313102:99313140	99273626:99273752	ENSG00000138698.10	ENST00000510870.1
exon_skip_425249	4	99273663:99273752:99300167:99300314:99308586:99308654	99300167:99300314	ENSG00000138698.10	ENST00000503745.1
exon_skip_425250	4	99273663:99273752:99300167:99300314:99313102:99313140	99300167:99300314	ENSG00000138698.10	ENST00000505378.1,ENST00000508213.1,ENST00000408927.3,ENST00000453712.2,ENST00000507303.1,ENST00000339360.5
exon_skip_425255	4	99273663:99273752:99308586:99308658:99313102:99313140	99308586:99308658	ENSG00000138698.10	ENST00000512857.1
exon_skip_425256	4	99273663:99273752:99313102:99313231:99325627:99325737	99313102:99313231	ENSG00000138698.10	ENST00000380158.4,ENST00000408900.3
exon_skip_425258	4	99300309:99300314:99308586:99308654:99313102:99313140	99308586:99308654	ENSG00000138698.10	ENST00000503745.1
exon_skip_425260	4	99300309:99300314:99313102:99313231:99325627:99325737	99313102:99313231	ENSG00000138698.10	ENST00000408927.3,ENST00000453712.2,ENST00000339360.5
exon_skip_425261	4	99313102:99313231:99325627:99325753:99337895:99338039	99325627:99325753	ENSG00000138698.10	ENST00000380158.4,ENST00000408927.3,ENST00000453712.2,ENST00000408900.3,ENST00000339360.5
exon_skip_425262	4	99325627:99325753:99337895:99338039:99338517:99338649	99337895:99338039	ENSG00000138698.10	ENST00000380158.4,ENST00000264572.7,ENST00000408927.3,ENST00000453712.2,ENST00000408900.3,ENST00000339360.5
exon_skip_425265	4	99339807:99339942:99341169:99341295:99342405:99342434	99341169:99341295	ENSG00000138698.10	ENST00000380158.4,ENST00000264572.7,ENST00000408927.3,ENST00000408900.3,ENST00000339360.5,ENST00000509501.1
exon_skip_425266	4	99339807:99339942:99341169:99341295:99342408:99342545	99341169:99341295	ENSG00000138698.10	ENST00000453712.2
exon_skip_425267	4	99355086:99355213:99358090:99358219:99363140:99363268	99358090:99358219	ENSG00000138698.10	ENST00000380158.4,ENST00000264572.7,ENST00000408927.3,ENST00000453712.2,ENST00000408900.3,ENST00000339360.5

PSI values of skipped exons in GTEx.

* Skipped exon sequences.

Top

Open reading frame (ORF) annotation in the exon skipping event for RAP1GDS1

Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000408927	99214558	99214666	In-frame
ENST00000408927	99264289	99264412	In-frame
ENST00000408927	99273626	99273752	In-frame
ENST00000408927	99300167	99300314	In-frame
ENST00000408927	99313102	99313231	In-frame
ENST00000408927	99325627	99325753	In-frame
ENST00000408927	99337895	99338039	In-frame
ENST00000408927	99341169	99341295	In-frame
ENST00000408927	99358090	99358219	In-frame

Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000408927	99214558	99214666	In-frame
ENST00000408927	99264289	99264412	In-frame
ENST00000408927	99273626	99273752	In-frame
ENST00000408927	99300167	99300314	In-frame
ENST00000408927	99313102	99313231	In-frame
ENST00000408927	99325627	99325753	In-frame
ENST00000408927	99337895	99338039	In-frame
ENST00000408927	99341169	99341295	In-frame
ENST00000408927	99358090	99358219	In-frame

Top

Infer the effects of exon skipping event on protein functional features for RAP1GDS1

Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.

Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000408927	3698	607	99214558	99214666	118	225	1	37
ENST00000408927	3698	607	99264289	99264412	226	348	37	78
ENST00000408927	3698	607	99273626	99273752	349	474	78	120
ENST00000408927	3698	607	99300167	99300314	475	621	120	169
ENST00000408927	3698	607	99313102	99313231	622	750	169	212
ENST00000408927	3698	607	99325627	99325753	751	876	212	254
ENST00000408927	3698	607	99337895	99338039	877	1020	254	302
ENST00000408927	3698	607	99341169	99341295	1288	1413	391	433
ENST00000408927	3698	607	99358090	99358219	1681	1809	522	565

Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000408927	3698	607	99214558	99214666	118	225	1	37
ENST00000408927	3698	607	99264289	99264412	226	348	37	78
ENST00000408927	3698	607	99273626	99273752	349	474	78	120
ENST00000408927	3698	607	99300167	99300314	475	621	120	169
ENST00000408927	3698	607	99313102	99313231	622	750	169	212
ENST00000408927	3698	607	99325627	99325753	751	876	212	254
ENST00000408927	3698	607	99337895	99338039	877	1020	254	302
ENST00000408927	3698	607	99341169	99341295	1288	1413	391	433
ENST00000408927	3698	607	99358090	99358219	1681	1809	522	565

Lost protein functional features of individual exon skipping events in TCGA.

UniProt acc.

Start of exon skipping (AA)

End of exon skipping (AA)

Protein feature start (AA)

Protein feature end (AA)

Category of protein feature

Description of feature

Lost protein functional features of individual exon skipping events in GTEx.

UniProt acc.

Start of exon skipping (AA)

End of exon skipping (AA)

Protein feature start (AA)

Protein feature end (AA)

Category of protein feature

Description of feature

Top

SNVs in the skipped exons for RAP1GDS1

- Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.

- Differential PSIs between mutated versus non-mutated samples.

- Non-synonymous mutations located in the skipped exons in TCGA.

Cancer type	Sample	ESID	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
SARC	TCGA-DX-A8BJ-01	exon_skip_425260 exon_skip_425256	99313103	99313231	99313196	99313205	Frame_Shift_Del	TGTGTCTTGT	-	p.C203fs
SARC	TCGA-DX-A8BJ-01	exon_skip_425260 exon_skip_425256	99313103	99313231	99313196	99313205	Frame_Shift_Del	TGTGTCTTGT	-	p.MCLV201fs
LIHC	TCGA-DD-A39Y-01	exon_skip_425261	99325628	99325753	99325748	99325748	Frame_Shift_Del	A	-	p.E253fs
LIHC	TCGA-G3-A3CJ-01	exon_skip_425262	99337896	99338039	99338022	99338022	Frame_Shift_Del	T	-	p.V297fs
ESCA	TCGA-Z6-A9VB-01	exon_skip_425237 exon_skip_425236	99214556	99214666	99214624	99214624	Nonsense_Mutation	G	T	p.E25X
ESCA	TCGA-Z6-A9VB-01	exon_skip_425237 exon_skip_425236	99214559	99214666	99214624	99214624	Nonsense_Mutation	G	T	p.E25X
BLCA	TCGA-GU-A762-01	exon_skip_425261	99325628	99325753	99325666	99325666	Nonsense_Mutation	G	T	p.E226*
LUAD	TCGA-55-8506-01	exon_skip_425261	99325628	99325753	99325714	99325714	Nonsense_Mutation	G	T	p.E242*
UCEC	TCGA-AP-A056-01	exon_skip_425261	99325628	99325753	99325714	99325714	Nonsense_Mutation	G	T	p.E243*

- Depth of coverage in the three exons composing exon skipping event

Depth of coverage in three exons

Mutation description

- Non-synonymous mutations located in the skipped exons in CCLE.

Sample	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
NBSUSSR_AUTONOMIC_GANGLIA	99341170	99341295	99341203	99341204	Frame_Shift_Ins	-	CACA	p.-404fs
TM31_CENTRAL_NERVOUS_SYSTEM	99214559	99214666	99214561	99214561	Missense_Mutation	A	G	p.N3D
TM31_CENTRAL_NERVOUS_SYSTEM	99214556	99214666	99214561	99214561	Missense_Mutation	A	G	p.N3D
GP2D_LARGE_INTESTINE	99264290	99264412	99264302	99264302	Missense_Mutation	G	A	p.S42N
GP2D_LARGE_INTESTINE	99264290	99264470	99264302	99264302	Missense_Mutation	G	A	p.S42N
GP5D_LARGE_INTESTINE	99264290	99264412	99264302	99264302	Missense_Mutation	G	A	p.S42N
GP5D_LARGE_INTESTINE	99264290	99264470	99264302	99264302	Missense_Mutation	G	A	p.S42N
BICR18_UPPER_AERODIGESTIVE_TRACT	99264290	99264412	99264385	99264385	Missense_Mutation	A	G	p.N70D
BICR18_UPPER_AERODIGESTIVE_TRACT	99264290	99264470	99264385	99264385	Missense_Mutation	A	G	p.N70D
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	99264290	99264412	99264409	99264409	Missense_Mutation	A	T	p.N78Y
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	99264290	99264470	99264409	99264409	Missense_Mutation	A	T	p.N78Y
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	99273627	99273752	99273636	99273636	Missense_Mutation	G	C	p.R82P
NCIH1339_LUNG	99273627	99273752	99273642	99273642	Missense_Mutation	C	T	p.P84L
WSUNHL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	99300168	99300314	99300171	99300171	Missense_Mutation	A	G	p.E122G
HSC1_SKIN	99300168	99300314	99300197	99300197	Missense_Mutation	G	T	p.G131C
BICR18_UPPER_AERODIGESTIVE_TRACT	99300168	99300314	99300269	99300269	Missense_Mutation	T	A	p.L155M
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	99300168	99300314	99300269	99300269	Missense_Mutation	T	A	p.L155M
HEC251_ENDOMETRIUM	99300168	99300314	99300310	99300310	Missense_Mutation	G	T	p.E168D
SW156_KIDNEY	99325628	99325753	99325639	99325639	Missense_Mutation	G	C	p.E217Q
BT20_BREAST	99337896	99338039	99337926	99337926	Missense_Mutation	G	A	p.G265D
NCIH2085_LUNG	99337896	99338039	99337964	99337964	Missense_Mutation	G	T	p.V278L
NBTU110_AUTONOMIC_GANGLIA	99337896	99338039	99337973	99337973	Missense_Mutation	G	A	p.D281N
BT20_BREAST	99337896	99338039	99337979	99337979	Missense_Mutation	G	C	p.E283Q
2313287_STOMACH	99337896	99338039	99338037	99338037	Missense_Mutation	G	A	p.G302E
BICR18_UPPER_AERODIGESTIVE_TRACT	99341170	99341295	99341172	99341172	Missense_Mutation	A	G	p.I393V
HUH1_LIVER	99341170	99341295	99341236	99341236	Missense_Mutation	A	T	p.E414V
G401_SOFT_TISSUE	99358091	99358219	99358104	99358104	Missense_Mutation	A	C	p.K527N
HCC1359_LUNG	99358091	99358219	99358105	99358105	Missense_Mutation	G	T	p.D528Y
LU135_LUNG	99358091	99358219	99358163	99358163	Missense_Mutation	G	A	p.S547N
HCC202_BREAST	99358091	99358219	99358136	99358136	Nonsense_Mutation	T	G	p.L538*
BICR18_UPPER_AERODIGESTIVE_TRACT	99273627	99273752	99273628	99273628	Splice_Site	G	A	p.E79E
BT474_BREAST	99273627	99273752	99273752	99273752	Splice_Site	C	T	p.H121Y

Top

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for RAP1GDS1

sQTL information located at the skipped exons.

Exon skip ID	Chromosome	Three exons	Skippped exon	ENST	Cancer type	SNP id	Location	DNA change (ref/var)	P-value
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	GBM	rs34325900	chr4:99218108	G/GA	7.25e-05
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	ESCA	rs34325900	chr4:99218108	G/GA	8.93e-09
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	HNSC	rs34325900	chr4:99218108	G/GA	2.08e-11
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	LGG	rs34325900	chr4:99218108	G/GA	1.56e-23
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	LGG	rs34325900	chr4:99218108	G/GA	3.16e-03
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	KIRC	rs34325900	chr4:99218108	G/GA	4.41e-11
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	LUAD	rs34325900	chr4:99218108	G/GA	1.72e-13
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	PAAD	rs34325900	chr4:99218108	G/GA	4.78e-04
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	PRAD	rs34325900	chr4:99218108	G/GA	1.15e-06
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	SARC	rs34325900	chr4:99218108	G/GA	2.23e-04
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	STAD	rs34325900	chr4:99218108	G/GA	3.68e-14
exon_skip_425238	4	99214558:99214666:99218068:99218141:99264289:99264412	99218068:99218141	ENST00000508490.1,ENST00000503667.1	THCA	rs34325900	chr4:99218108	G/GA	1.11e-20

Top

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for RAP1GDS1

Top

Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for RAP1GDS1

Top

RelatedDrugs for RAP1GDS1

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for RAP1GDS1

Diseases associated with this gene.
(DisGeNet 4.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	Gene structures and expression levels
	Exon skipping events with PSIs in TCGA
	Exon skipping events with PSIs in GTEx
	Open reading frame (ORF) annotation in the exon skipping event
	Exon skipping events in the canonical protein sequence
	SNVs in the skipped exons with depth of coverage
	Splicing Quantitative Trait Loci (sQTLs) in the skipped exons
	Splicing Quantitative Trait Methylation (sQTM) in the skipped exon
	Related drugs with this gene
	Related diseases with this gene

Home

Download

Statistics

Landscape

Help

Contact

Gene summary for RAP1GDS1

Exon skipping events across known transcript of Ensembl for RAP1GDS1 from UCSC genome browser

Gene isoform structures and expression levels for RAP1GDS1

Exon skipping events with PSIs in TCGA for RAP1GDS1

Exon skipping events with PSIs in GTEx for RAP1GDS1

Open reading frame (ORF) annotation in the exon skipping event for RAP1GDS1

Infer the effects of exon skipping event on protein functional features for RAP1GDS1

SNVs in the skipped exons for RAP1GDS1

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for RAP1GDS1

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for RAP1GDS1

Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for RAP1GDS1

RelatedDrugs for RAP1GDS1

RelatedDiseases for RAP1GDS1