ExonSkipDB Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

Gene summary

leaf

Gene structures and expression levels

leaf

Exon skipping events with PSIs in TCGA

leaf

Exon skipping events with PSIs in GTEx

leaf

Open reading frame (ORF) annotation in the exon skipping event

leaf

Exon skipping events in the canonical protein sequence

leaf

SNVs in the skipped exons with depth of coverage

leaf

Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

leaf

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

leaf

Related drugs with this gene

leaf

Related diseases with this gene

Gene summary for DIP2B

check button Gene summary
Gene informationGene symbol

DIP2B

Gene ID

57609

Gene namedisco interacting protein 2 homolog B
Synonyms-
Cytomap

12q13.12

Type of geneprotein-coding
Descriptiondisco-interacting protein 2 homolog BDIP2 disco-interacting protein 2 homolog B
Modification date20180519
UniProtAcc

Q9P265

ContextPubMed: DIP2B [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

Exon skipping events across known transcript of Ensembl for DIP2B from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

Top

Gene isoform structures and expression levels for DIP2B

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


Top

Exon skipping events with PSIs in TCGA for DIP2B

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_822511250898889:50899023:51019758:51019830:51034506:5103463551019758:51019830ENSG00000066084.8ENST00000301180.5
exon_skip_822521251019758:51019830:51034506:51034635:51053976:5105410251034506:51034635ENSG00000066084.8ENST00000301180.5,ENST00000549620.1
exon_skip_822531251034587:51034635:51048793:51048823:51053976:5105410251048793:51048823ENSG00000066084.8ENST00000546719.1
exon_skip_822541251034587:51034635:51053976:51054102:51064968:5106518151053976:51054102ENSG00000066084.8ENST00000301180.5,ENST00000549620.1
exon_skip_822561251053976:51054102:51064968:51065181:51068256:5106841251064968:51065181ENSG00000066084.8ENST00000301180.5,ENST00000546719.1,ENST00000549620.1
exon_skip_822581251074454:51074546:51076920:51077031:51079615:5107973951076920:51077031ENSG00000066084.8ENST00000301180.5
exon_skip_822601251080355:51080465:51084831:51084934:51086731:5108679651084831:51084934ENSG00000066084.8ENST00000301180.5
exon_skip_822621251080355:51080465:51086731:51086796:51089049:5108914351086731:51086796ENSG00000066084.8ENST00000546732.1
exon_skip_822631251084831:51084934:51086731:51086796:51089049:5108914351086731:51086796ENSG00000066084.8ENST00000301180.5
exon_skip_822641251102230:51102345:51108177:51108379:51112491:5111260151108177:51108379ENSG00000066084.8ENST00000301180.5,ENST00000546732.1
exon_skip_822651251118557:51118669:51121485:51121595:51122330:5112246151121485:51121595ENSG00000066084.8ENST00000301180.5,ENST00000546732.1
exon_skip_822661251121485:51121595:51122330:51122461:51125151:5112532051122330:51122461ENSG00000066084.8ENST00000301180.5,ENST00000546732.1
exon_skip_822681251125151:51125320:51126148:51126319:51127917:5112797951126148:51126319ENSG00000066084.8ENST00000301180.5,ENST00000546732.1
exon_skip_822691251128855:51128913:51130818:51130893:51133191:5113336951130818:51130893ENSG00000066084.8ENST00000301180.5,ENST00000546732.1

check button PSI values of skipped exons in TCGA.
psi tcga

Top

Exon skipping events with PSIs in GTEx for DIP2B

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_822511250898889:50899023:51019758:51019830:51034506:5103463551019758:51019830ENSG00000066084.8ENST00000301180.5
exon_skip_822521251019758:51019830:51034506:51034635:51053976:5105410251034506:51034635ENSG00000066084.8ENST00000549620.1,ENST00000301180.5
exon_skip_822531251034587:51034635:51048793:51048823:51053976:5105410251048793:51048823ENSG00000066084.8ENST00000546719.1
exon_skip_822541251034587:51034635:51053976:51054102:51064968:5106518151053976:51054102ENSG00000066084.8ENST00000549620.1,ENST00000301180.5
exon_skip_822561251053976:51054102:51064968:51065181:51068256:5106841251064968:51065181ENSG00000066084.8ENST00000549620.1,ENST00000301180.5,ENST00000546719.1
exon_skip_822581251074454:51074546:51076920:51077031:51079615:5107973951076920:51077031ENSG00000066084.8ENST00000301180.5
exon_skip_822601251080355:51080465:51084831:51084934:51086731:5108679651084831:51084934ENSG00000066084.8ENST00000301180.5
exon_skip_822621251080355:51080465:51086731:51086796:51089049:5108914351086731:51086796ENSG00000066084.8ENST00000546732.1
exon_skip_822631251084831:51084934:51086731:51086796:51089049:5108914351086731:51086796ENSG00000066084.8ENST00000301180.5
exon_skip_822641251102230:51102345:51108177:51108379:51112491:5111260151108177:51108379ENSG00000066084.8ENST00000301180.5,ENST00000546732.1
exon_skip_822651251118557:51118669:51121485:51121595:51122330:5112246151121485:51121595ENSG00000066084.8ENST00000301180.5,ENST00000546732.1
exon_skip_822661251121485:51121595:51122330:51122461:51125151:5112532051122330:51122461ENSG00000066084.8ENST00000301180.5,ENST00000546732.1
exon_skip_822681251125151:51125320:51126148:51126319:51127917:5112797951126148:51126319ENSG00000066084.8ENST00000301180.5,ENST00000546732.1
exon_skip_822691251128855:51128913:51130818:51130893:51133191:5113336951130818:51130893ENSG00000066084.8ENST00000301180.5,ENST00000546732.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

Top

Open reading frame (ORF) annotation in the exon skipping event for DIP2B

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003011805108483151084934Frame-shift
ENST000003011805108673151086796Frame-shift
ENST000003011805110817751108379Frame-shift
ENST000003011805112148551121595Frame-shift
ENST000003011805112233051122461Frame-shift
ENST000003011805101975851019830In-frame
ENST000003011805103450651034635In-frame
ENST000003011805105397651054102In-frame
ENST000003011805106496851065181In-frame
ENST000003011805107692051077031In-frame
ENST000003011805112614851126319In-frame
ENST000003011805113081851130893In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003011805108483151084934Frame-shift
ENST000003011805108673151086796Frame-shift
ENST000003011805110817751108379Frame-shift
ENST000003011805112148551121595Frame-shift
ENST000003011805112233051122461Frame-shift
ENST000003011805101975851019830In-frame
ENST000003011805103450651034635In-frame
ENST000003011805105397651054102In-frame
ENST000003011805106496851065181In-frame
ENST000003011805107692051077031In-frame
ENST000003011805112614851126319In-frame
ENST000003011805113081851130893In-frame

Top

Infer the effects of exon skipping event on protein functional features for DIP2B

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003011808610157651019758510198301352063357
ENST0000030118086101576510345065103463520733557100
ENST00000301180861015765105397651054102336461100142
ENST00000301180861015765106496851065181462674142213
ENST0000030118086101576510769205107703112411351402439
ENST000003011808610157651126148511263193845401512701327
ENST000003011808610157651130818511308934136421013671392

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003011808610157651019758510198301352063357
ENST0000030118086101576510345065103463520733557100
ENST00000301180861015765105397651054102336461100142
ENST00000301180861015765106496851065181462674142213
ENST0000030118086101576510769205107703112411351402439
ENST000003011808610157651126148511263193845401512701327
ENST000003011808610157651130818511308934136421013671392

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9P265335711576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P265335714131DomainNote=DMAP-interaction
Q9P26533575050Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P26533575353Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q9P2655710011576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P2655710014131DomainNote=DMAP-interaction
Q9P265571007171Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P26557100100100Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q9P26510014211576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P26510014214131DomainNote=DMAP-interaction
Q9P265100142100100Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q9P265100142140140Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P26514221311576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P265142213145234Compositional biasNote=Ser-rich
Q9P265142213146146Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P265142213148148Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P265142213153153Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q3UH60
Q9P265142213178178Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
Q9P265142213193193Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
Q9P265142213203203Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:23186163;Dbxref=PMID:19690332,PMID:23186163
Q9P26540243911576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P2651270132711576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P2651367139211576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9P265335711576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P265335714131DomainNote=DMAP-interaction
Q9P26533575050Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P26533575353Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q9P2655710011576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P2655710014131DomainNote=DMAP-interaction
Q9P265571007171Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P26557100100100Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q9P26510014211576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P26510014214131DomainNote=DMAP-interaction
Q9P265100142100100Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q9P265100142140140Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P26514221311576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P265142213145234Compositional biasNote=Ser-rich
Q9P265142213146146Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P265142213148148Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
Q9P265142213153153Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q3UH60
Q9P265142213178178Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
Q9P265142213193193Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
Q9P265142213203203Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:23186163;Dbxref=PMID:19690332,PMID:23186163
Q9P26540243911576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P2651270132711576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B
Q9P2651367139211576ChainID=PRO_0000318736;Note=Disco-interacting protein 2 homolog B


Top

SNVs in the skipped exons for DIP2B

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A3A0-01exon_skip_82264
51108178511083795110820151108201Frame_Shift_DelG-p.V891fs
LIHCTCGA-DD-A3A0-01exon_skip_82264
51108178511083795110833051108330Frame_Shift_DelC-p.C934fs
LIHCTCGA-G3-A3CJ-01exon_skip_82264
51108178511083795110833051108330Frame_Shift_DelC-p.C934fs
UCECTCGA-B5-A11N-01exon_skip_82252
51034507510346355103453051034530Nonsense_MutationGTp.E66*
BLCATCGA-C4-A0F6-01exon_skip_82256
51064969510651815106507951065079Nonsense_MutationCTp.Q180*
SKCMTCGA-D3-A2JF-06exon_skip_82262
exon_skip_82263
51086732510867965108673151086731Splice_SiteGA.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE51034507510346355103460551034605Frame_Shift_DelG-p.G92fs
IGROV1_OVARY51034507510346355103460551034605Frame_Shift_DelG-p.G92fs
CP66MEL_SKIN51034507510346355103455451034554Missense_MutationCTp.P74S
D263MG_CENTRAL_NERVOUS_SYSTEM51034507510346355103455451034554Missense_MutationCGp.P74A
HEC251_ENDOMETRIUM51034507510346355103459651034596Missense_MutationACp.T88P
639V_URINARY_TRACT51034507510346355103461851034618Missense_MutationATp.D95V
MZ7B_MATCHED_NORMAL_TISSUE51053977510541025105400051054000Missense_MutationGCp.A109P
MZ7MEL_SKIN51053977510541025105400051054000Missense_MutationGCp.A109P
MS1_SKIN51053977510541025105405851054058Missense_MutationGAp.R128Q
MS1_LUNG51053977510541025105405851054058Missense_MutationGAp.R128Q
MFE319_ENDOMETRIUM51053977510541025105410051054100Missense_MutationCTp.P142L
HEC151_ENDOMETRIUM51064969510651815106499451064994Missense_MutationGTp.E151D
MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE51064969510651815106510351065103Missense_MutationGAp.A188T
PACADD137_PANCREAS51064969510651815106511351065113Missense_MutationCTp.T191M
CW2_LARGE_INTESTINE51064969510651815106512151065121Missense_MutationCTp.H194Y
SKMEL3_SKIN51076921510770315107701351077013Missense_MutationGCp.E433D
EW16_BONE51084832510849345108487851084878Missense_MutationGAp.R533Q
DOV13_OVARY51084832510849345108490751084907Missense_MutationCGp.L543V
SNGM_ENDOMETRIUM51108178511083795110827851108278Missense_MutationCTp.T917M
HELA_CERVIX51108178511083795110832851108328Missense_MutationTGp.C934G
LIM1215_LARGE_INTESTINE51108178511083795110836551108365Missense_MutationGAp.R946Q
HT115_LARGE_INTESTINE51121486511215955112151851121518Missense_MutationTCp.Y1145H
BC3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE51122331511224615112241851122418Missense_MutationGCp.D1200H
HUH7_LIVER51122331511224615112244251122442Missense_MutationGAp.A1208T
HT115_LARGE_INTESTINE51126149511263195112622351126223Missense_MutationGTp.Q1295H
LS411N_LARGE_INTESTINE51126149511263195112626351126263Missense_MutationCAp.P1309T
LNCAPCLONEFGC_PROSTATE51130819511308935113086851130868Missense_MutationCTp.P1384L
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE51130819511308935113087851130878Missense_MutationCGp.D1387E
JHUEM7_ENDOMETRIUM51034507510346355103453051034530Nonsense_MutationGTp.E66*
HO1U1_UPPER_AERODIGESTIVE_TRACT51064969510651815106497051064970Splice_SiteCTp.D143D
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE51108178511083795110837851108378Splice_SiteAGp.P950P

Top

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for DIP2B

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

Top

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for DIP2B


Top

Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for DIP2B


Top

RelatedDrugs for DIP2B

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for DIP2B

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource