ExonSkipDB: functional annotation of exon skipping event in human

Gene summary for AGTRAP

Gene summary

Gene information	Gene symbol	AGTRAP
	Gene ID	57085
	Gene name	angiotensin II receptor associated protein
	Synonyms	ATRAP
	Cytomap	1p36.22
	Type of gene	protein-coding
	Description	type-1 angiotensin II receptor-associated proteinAT1 receptor-associated proteinATI receptor-associated proteinangiotensin II, type I receptor-associated protein
	Modification date	20180519
	UniProtAcc	Q6RW13
	Context	PubMed: AGTRAP [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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Exon skipping events across known transcript of Ensembl for AGTRAP from UCSC genome browser

Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Gene isoform structures and expression levels for AGTRAP

Expression levels of gene isoforms across TCGA.

Expression levels of gene isoforms across GTEx.

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Exon skipping events with PSIs in TCGA for AGTRAP

Information of exkip skipping event in TCGA.

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_1255	1	11796231:11796292:11804589:11804625:11805859:11805894	11804589:11804625	ENSG00000177674.11	ENST00000376627.2
exon_skip_1256	1	11796231:11796292:11805859:11805894:11807496:11807602	11805859:11805894	ENSG00000177674.11	ENST00000376629.4,ENST00000314340.5
exon_skip_1258	1	11796231:11796292:11805859:11805894:11808471:11808646	11805859:11805894	ENSG00000177674.11	ENST00000510878.1
exon_skip_1268	1	11805859:11805894:11805986:11806280:11807496:11807602	11805986:11806280	ENSG00000177674.11	ENST00000491346.1
exon_skip_1270	1	11805859:11805894:11806044:11806280:11807496:11807602	11806044:11806280	ENSG00000177674.11	ENST00000476512.1
exon_skip_1274	1	11805859:11805894:11806183:11806280:11807496:11807602	11806183:11806280	ENSG00000177674.11	ENST00000376627.2,ENST00000452018.2,ENST00000400895.2,ENST00000476309.1
exon_skip_1276	1	11805859:11805894:11807496:11807602:11808471:11808646	11807496:11807602	ENSG00000177674.11	ENST00000376629.4,ENST00000314340.5
exon_skip_1281	1	11805859:11805894:11808471:11808667:11810133:11810182	11808471:11808667	ENSG00000177674.11	ENST00000510878.1
exon_skip_1283	1	11807568:11807602:11808471:11808646:11810133:11810182	11808471:11808646	ENSG00000177674.11	ENST00000452018.2,ENST00000376629.4,ENST00000376637.3,ENST00000514733.1,ENST00000491346.1,ENST00000476309.1
exon_skip_1284	1	11807568:11807602:11808471:11808667:11810133:11810182	11808471:11808667	ENSG00000177674.11	ENST00000376627.2,ENST00000513739.1,ENST00000400895.2,ENST00000471765.1,ENST00000476512.1,ENST00000314340.5

PSI values of skipped exons in TCGA.

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Exon skipping events with PSIs in GTEx for AGTRAP

Information of exkip skipping event in GTEx

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_1255	1	11796231:11796292:11804589:11804625:11805859:11805894	11804589:11804625	ENSG00000177674.11	ENST00000376627.2
exon_skip_1256	1	11796231:11796292:11805859:11805894:11807496:11807602	11805859:11805894	ENSG00000177674.11	ENST00000376629.4,ENST00000314340.5
exon_skip_1258	1	11796231:11796292:11805859:11805894:11808471:11808646	11805859:11805894	ENSG00000177674.11	ENST00000510878.1
exon_skip_1268	1	11805859:11805894:11805986:11806280:11807496:11807602	11805986:11806280	ENSG00000177674.11	ENST00000491346.1
exon_skip_1270	1	11805859:11805894:11806044:11806280:11807496:11807602	11806044:11806280	ENSG00000177674.11	ENST00000476512.1
exon_skip_1274	1	11805859:11805894:11806183:11806280:11807496:11807602	11806183:11806280	ENSG00000177674.11	ENST00000400895.2,ENST00000376627.2,ENST00000452018.2,ENST00000476309.1
exon_skip_1276	1	11805859:11805894:11807496:11807602:11808471:11808646	11807496:11807602	ENSG00000177674.11	ENST00000376629.4,ENST00000314340.5
exon_skip_1281	1	11805859:11805894:11808471:11808667:11810133:11810182	11808471:11808667	ENSG00000177674.11	ENST00000510878.1
exon_skip_1283	1	11807568:11807602:11808471:11808646:11810133:11810182	11808471:11808646	ENSG00000177674.11	ENST00000376637.3,ENST00000491346.1,ENST00000376629.4,ENST00000452018.2,ENST00000476309.1,ENST00000514733.1
exon_skip_1284	1	11807568:11807602:11808471:11808667:11810133:11810182	11808471:11808667	ENSG00000177674.11	ENST00000476512.1,ENST00000400895.2,ENST00000376627.2,ENST00000314340.5,ENST00000513739.1,ENST00000471765.1

PSI values of skipped exons in GTEx.

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for AGTRAP

Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000314340	11805859	11805894	Frame-shift
ENST00000314340	11807496	11807602	Frame-shift
ENST00000314340	11808471	11808667	Frame-shift

Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000314340	11805859	11805894	Frame-shift
ENST00000314340	11807496	11807602	Frame-shift
ENST00000314340	11808471	11808667	Frame-shift

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Infer the effects of exon skipping event on protein functional features for AGTRAP

Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.

Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.

ENST

Length of mRNA

Length of AA seq.

Genomic start

Genomic end

mRNA start

mRNA end

AA start

AA end

Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.

ENST

Length of mRNA

Length of AA seq.

Genomic start

Genomic end

mRNA start

mRNA end

AA start

AA end

Lost protein functional features of individual exon skipping events in TCGA.

UniProt acc.

Start of exon skipping (AA)

End of exon skipping (AA)

Protein feature start (AA)

Protein feature end (AA)

Category of protein feature

Description of feature

Lost protein functional features of individual exon skipping events in GTEx.

UniProt acc.

Start of exon skipping (AA)

End of exon skipping (AA)

Protein feature start (AA)

Protein feature end (AA)

Category of protein feature

Description of feature

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SNVs in the skipped exons for AGTRAP

- Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.

- Differential PSIs between mutated versus non-mutated samples.

AGTRAP_LIHC_exon_skip_1268_psi_boxplot.png
boxplot

AGTRAP_LIHC_exon_skip_1270_psi_boxplot.png
boxplot

AGTRAP_LIHC_exon_skip_1274_psi_boxplot.png
boxplot

- Non-synonymous mutations located in the skipped exons in TCGA.

Cancer type	Sample	ESID	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
LIHC	TCGA-G3-A3CJ-01	exon_skip_1268	11805987	11806280	11806206	11806206	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	exon_skip_1270	11806045	11806280	11806206	11806206	Frame_Shift_Del	A	-	p.K41fs
LIHC	TCGA-G3-A3CJ-01	exon_skip_1274	11806184	11806280	11806206	11806206	Frame_Shift_Del	A	-	p.K41fs
SKCM	TCGA-ER-A19Q-06	exon_skip_1276	11807497	11807602	11807497	11807497	Nonsense_Mutation	G	A	p.W21X
HNSC	TCGA-BA-A6DJ-01	exon_skip_1276	11807497	11807602	11807587	11807587	Nonsense_Mutation	C	T	p.R40*
BLCA	TCGA-4Z-AA7Y-01	exon_skip_1284 exon_skip_1281	11808472	11808667	11808649	11808649	Nonsense_Mutation	G	T	p.E116*

- Depth of coverage in the three exons composing exon skipping event

Depth of coverage in three exons	Mutation description
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1268
	Skipped exon start: 11805987
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1270
	Skipped exon start: 11806045
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1274
	Skipped exon start: 11806184
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
exon_skip_101516_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_106378_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_106524_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_109529_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_109778_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11286_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11289_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11349_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_113894_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_113898_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11611_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11615_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11638_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11641_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11926_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11933_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11937_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11939_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_124065_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_124066_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_124693_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_126824_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_126833_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_126836_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_1268_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_1270_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_127101_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_1274_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_128729_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_129795_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_129799_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_131401_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_131474_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_135545_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_135553_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_13626_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_138373_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_138676_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_141657_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_143515_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_143728_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_14564_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_149490_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_153354_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_1873_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_1874_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_24442_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_284510_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_289275_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_289905_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_291218_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_293221_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_293223_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_300058_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_300676_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_302253_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_302693_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_305815_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_30789_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_30792_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_309404_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_309486_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_309505_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_309539_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_311823_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_313290_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_315285_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_315286_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_316122_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_325693_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_327441_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_327550_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_329666_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_329933_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_331517_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_354387_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_354396_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_356468_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_365019_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_365023_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_371589_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_375393_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_380574_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_382000_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_382738_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_385031_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_387684_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_421130_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_421131_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_421134_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_426528_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_426530_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_427391_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_430528_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_433436_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_433655_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_434375_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_43567_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_436327_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_436618_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_444593_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_445559_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_447600_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_452739_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_4535_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_457245_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_45824_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_464169_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_464999_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_466343_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_467017_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_468347_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_470485_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_478117_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_483502_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_483618_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_483622_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_492152_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_499409_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_502144_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_504288_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_504556_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_506095_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_506097_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_507316_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_507513_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_55516_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_57597_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_57603_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_5818_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_5861_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_58894_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_59476_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_60476_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_67293_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_67402_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_69019_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_71100_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_73796_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_84528_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_86050_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_86051_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_86135_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_87721_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_93891_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_94866_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_96453_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_98550_LIHC_TCGA-G3-A3CJ-01.png
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1268
	Skipped exon start: 11805987
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1270
	Skipped exon start: 11806045
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1274
	Skipped exon start: 11806184
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
exon_skip_101516_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_106378_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_106524_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_109529_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_109778_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11286_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11289_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_11349_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_113894_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_113898_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_380574_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_382000_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_427391_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_447600_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_94866_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_98550_LIHC_TCGA-G3-A3CJ-01.png
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1268
	Skipped exon start: 11805987
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1270
	Skipped exon start: 11806045
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
	Sample: TCGA-G3-A3CJ-01
	Cancer type: LIHC
	ESID: exon_skip_1274
	Skipped exon start: 11806184
	Skipped exon end: 11806280
	Mutation start: 11806206
	Mutation end: 11806206
	Mutation type: Frame_Shift_Del
	Reference seq: A
	Mutation seq: -
	AAchange: p.K41fs
exon_skip_101516_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_106378_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_11286_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_11349_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_1274_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_13626_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_138373_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_138676_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_14564_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_1873_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_24442_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_289275_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_300058_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_300676_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_302253_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_30789_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_30792_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_309404_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_313290_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_315285_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_315286_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_316122_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_325693_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_331517_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_354387_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_354396_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_356468_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_365019_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_365023_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_371589_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_375393_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_380574_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_382000_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_387684_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_433655_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_434375_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_43567_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_436327_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_444593_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_445559_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_452739_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_4535_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_45824_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_464999_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_466343_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_467017_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_483618_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_492152_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_499409_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_504288_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_506095_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_506097_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_507316_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_507513_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_55516_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_57597_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_57603_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_5818_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_5861_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_60476_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_67402_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_69019_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_71100_LIHC_TCGA-G3-A3CJ-01.png
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exon_skip_87721_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_93891_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_94866_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_96453_LIHC_TCGA-G3-A3CJ-01.png
exon_skip_98550_LIHC_TCGA-G3-A3CJ-01.png

- Non-synonymous mutations located in the skipped exons in CCLE.

Sample	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
TTC549_SOFT_TISSUE	11807497	11807602	11807546	11807546	Missense_Mutation	C	G	p.L38V
LS411N_LARGE_INTESTINE	11805860	11805894	11805880	11805880	Nonsense_Mutation	G	A	p.W16*
ISTSL2_LUNG	11807497	11807602	11807562	11807562	Nonsense_Mutation	G	A	p.W43*

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for AGTRAP

sQTL information located at the skipped exons.

Exon skip ID

Chromosome

Three exons

Skippped exon

ENST

Cancer type

SNP id

Location

DNA change (ref/var)

P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for AGTRAP

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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for AGTRAP

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RelatedDrugs for AGTRAP

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for AGTRAP

Diseases associated with this gene.
(DisGeNet 4.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	Gene structures and expression levels
	Exon skipping events with PSIs in TCGA
	Exon skipping events with PSIs in GTEx
	Open reading frame (ORF) annotation in the exon skipping event
	Exon skipping events in the canonical protein sequence
	SNVs in the skipped exons with depth of coverage
	Splicing Quantitative Trait Loci (sQTLs) in the skipped exons
	Splicing Quantitative Trait Methylation (sQTM) in the skipped exon
	Related drugs with this gene
	Related diseases with this gene

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Gene summary for AGTRAP

Exon skipping events across known transcript of Ensembl for AGTRAP from UCSC genome browser

Gene isoform structures and expression levels for AGTRAP

Exon skipping events with PSIs in TCGA for AGTRAP

Exon skipping events with PSIs in GTEx for AGTRAP

Open reading frame (ORF) annotation in the exon skipping event for AGTRAP

Infer the effects of exon skipping event on protein functional features for AGTRAP

SNVs in the skipped exons for AGTRAP

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for AGTRAP

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for AGTRAP

Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for AGTRAP

RelatedDrugs for AGTRAP

RelatedDiseases for AGTRAP