ExonSkipDB: functional annotation of exon skipping event in human

Gene summary for MAPK3

Gene summary

Gene information	Gene symbol	MAPK3
	Gene ID	5595
	Gene name	mitogen-activated protein kinase 3
	Synonyms	ERK-1\|ERK1\|ERT2\|HS44KDAP\|HUMKER1A\|P44ERK1\|P44MAPK\|PRKM3\|p44-ERK1\|p44-MAPK
	Cytomap	16p11.2
	Type of gene	protein-coding
	Description	mitogen-activated protein kinase 3MAP kinase isoform p44MAPK 1extracellular signal-regulated kinase 1extracellular signal-related kinase 1insulin-stimulated MAP2 kinasemicrotubule-associated protein 2 kinase
	Modification date	20180529
	UniProtAcc	P27361
	Context	PubMed: MAPK3 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
MAPK3	GO:0006468	protein phosphorylation	7687743
MAPK3	GO:0006975	DNA damage induced protein phosphorylation	17560175
MAPK3	GO:0016310	phosphorylation	15950189
MAPK3	GO:0034198	cellular response to amino acid starvation	11096076
MAPK3	GO:0038083	peptidyl-tyrosine autophosphorylation	8388392
MAPK3	GO:0051403	stress-activated MAPK cascade	11096076
MAPK3	GO:0070849	response to epidermal growth factor	18794356\|21968647

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Exon skipping events across known transcript of Ensembl for MAPK3 from UCSC genome browser

Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Gene isoform structures and expression levels for MAPK3

Expression levels of gene isoforms across TCGA.

Expression levels of gene isoforms across GTEx.

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Exon skipping events with PSIs in TCGA for MAPK3

Information of exkip skipping event in TCGA.

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_143838	16	30125949:30126029:30126915:30126966:30127956:30128107	30126915:30126966	ENSG00000102882.7	ENST00000461737.1
exon_skip_143841	16	30128271:30128324:30128457:30128606:30128990:30129021	30128457:30128606	ENSG00000102882.7	ENST00000466521.1
exon_skip_143843	16	30128271:30128324:30128474:30128606:30128990:30129021	30128474:30128606	ENSG00000102882.7	ENST00000490298.1,ENST00000395199.3,ENST00000478356.1,ENST00000263025.4,ENST00000403394.1,ENST00000395200.1,ENST00000484663.1
exon_skip_143846	16	30128990:30129105:30129367:30129484:30129669:30129765	30129367:30129484	ENSG00000102882.7	ENST00000490298.1,ENST00000395199.3,ENST00000395202.1,ENST00000466521.1,ENST00000263025.4,ENST00000403394.1,ENST00000322266.5,ENST00000484663.1
exon_skip_143847	16	30128990:30129105:30129419:30129484:30129669:30129765	30129419:30129484	ENSG00000102882.7	ENST00000478356.1

PSI values of skipped exons in TCGA.

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Exon skipping events with PSIs in GTEx for MAPK3

Information of exkip skipping event in GTEx

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_143838	16	30125949:30126029:30126915:30126966:30127956:30128107	30126915:30126966	ENSG00000102882.7	ENST00000461737.1
exon_skip_143841	16	30128271:30128324:30128457:30128606:30128990:30129021	30128457:30128606	ENSG00000102882.7	ENST00000466521.1
exon_skip_143843	16	30128271:30128324:30128474:30128606:30128990:30129021	30128474:30128606	ENSG00000102882.7	ENST00000263025.4,ENST00000484663.1,ENST00000403394.1,ENST00000490298.1,ENST00000395200.1,ENST00000478356.1,ENST00000395199.3
exon_skip_143846	16	30128990:30129105:30129367:30129484:30129669:30129765	30129367:30129484	ENSG00000102882.7	ENST00000263025.4,ENST00000466521.1,ENST00000484663.1,ENST00000322266.5,ENST00000403394.1,ENST00000490298.1,ENST00000395202.1,ENST00000395199.3
exon_skip_143847	16	30128990:30129105:30129419:30129484:30129669:30129765	30129419:30129484	ENSG00000102882.7	ENST00000478356.1

PSI values of skipped exons in GTEx.

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for MAPK3

Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000263025	30128474	30128606	In-frame
ENST00000263025	30129367	30129484	In-frame

Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000263025	30128474	30128606	In-frame
ENST00000263025	30129367	30129484	In-frame

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Infer the effects of exon skipping event on protein functional features for MAPK3

Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.

Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000263025	1878	379	30129367	30129484	629	745	181	220
ENST00000263025	1878	379	30128474	30128606	861	992	258	302

Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000263025	1878	379	30129367	30129484	629	745	181	220
ENST00000263025	1878	379	30128474	30128606	861	992	258	302

Lost protein functional features of individual exon skipping events in TCGA.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
P27361	181	220	180	182	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	181	220	2	379	Chain	ID=PRO_0000186251;Note=Mitogen-activated protein kinase 3
P27361	181	220	42	330	Domain	Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255\|PROSITE-ProRule:PRU00159
P27361	181	220	193	195	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	181	220	208	210	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	181	220	213	215	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	181	220	198	198	Modified residue	Note=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244\|PubMed:19369195;Dbxref=PMID:19369195
P27361	181	220	202	202	Modified residue	Note=Phosphothreonine%3B by MAP2K1 and MAP2K2;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244\|PubMed:18669648,ECO:0000244\|PubMed:19690332,ECO:0000244\|PubMed:21406692,ECO:0000244\|PubMed:23186163;Dbxref=PMID:18669648,PMID:
P27361	181	220	204	204	Modified residue	Note=Phosphotyrosine%3B by MAP2K1 and MAP2K2;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000269,ECO:0000269;evidence=ECO:0000244\|PubMed:18669648,ECO:0000244\|PubMed:19690332,ECO:0000244\|PubMed:21406692,ECO:0000244\|PubMed:23186163,ECO
P27361	181	220	207	207	Modified residue	Note=Phosphothreonine%3B by autocatalysis;Ontology_term=ECO:0000269;evidence=ECO:0000269\|PubMed:19060905;Dbxref=PMID:19060905
P27361	181	220	202	204	Motif	Note=TXY
P27361	181	220	216	218	Turn	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	259	302	Alternative sequence	ID=VSP_041906;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303\|Ref.3
P27361	258	302	2	379	Chain	ID=PRO_0000186251;Note=Mitogen-activated protein kinase 3
P27361	258	302	42	330	Domain	Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255\|PROSITE-ProRule:PRU00159
P27361	258	302	250	261	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	266	269	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	275	282	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	292	295	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	301	310	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB

Lost protein functional features of individual exon skipping events in GTEx.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
P27361	181	220	180	182	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	181	220	2	379	Chain	ID=PRO_0000186251;Note=Mitogen-activated protein kinase 3
P27361	181	220	42	330	Domain	Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255\|PROSITE-ProRule:PRU00159
P27361	181	220	193	195	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	181	220	208	210	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	181	220	213	215	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	181	220	198	198	Modified residue	Note=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244\|PubMed:19369195;Dbxref=PMID:19369195
P27361	181	220	202	202	Modified residue	Note=Phosphothreonine%3B by MAP2K1 and MAP2K2;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244\|PubMed:18669648,ECO:0000244\|PubMed:19690332,ECO:0000244\|PubMed:21406692,ECO:0000244\|PubMed:23186163;Dbxref=PMID:18669648,PMID:
P27361	181	220	204	204	Modified residue	Note=Phosphotyrosine%3B by MAP2K1 and MAP2K2;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000269,ECO:0000269;evidence=ECO:0000244\|PubMed:18669648,ECO:0000244\|PubMed:19690332,ECO:0000244\|PubMed:21406692,ECO:0000244\|PubMed:23186163,ECO
P27361	181	220	207	207	Modified residue	Note=Phosphothreonine%3B by autocatalysis;Ontology_term=ECO:0000269;evidence=ECO:0000269\|PubMed:19060905;Dbxref=PMID:19060905
P27361	181	220	202	204	Motif	Note=TXY
P27361	181	220	216	218	Turn	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	259	302	Alternative sequence	ID=VSP_041906;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303\|Ref.3
P27361	258	302	2	379	Chain	ID=PRO_0000186251;Note=Mitogen-activated protein kinase 3
P27361	258	302	42	330	Domain	Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255\|PROSITE-ProRule:PRU00159
P27361	258	302	250	261	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	266	269	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	275	282	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	292	295	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB
P27361	258	302	301	310	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:4QTB

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SNVs in the skipped exons for MAPK3

- Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.

- Differential PSIs between mutated versus non-mutated samples.

MAPK3_LGG_exon_skip_143841_psi_boxplot.png
boxplot

MAPK3_LGG_exon_skip_143843_psi_boxplot.png
boxplot

MAPK3_LIHC_exon_skip_143841_psi_boxplot.png
boxplot

MAPK3_LIHC_exon_skip_143843_psi_boxplot.png
boxplot

- Non-synonymous mutations located in the skipped exons in TCGA.

Cancer type	Sample	ESID	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
LIHC	TCGA-DD-A1EG-01	exon_skip_143843 exon_skip_143841	30128458	30128606	30128491	30128491	Frame_Shift_Del	G	-	p.P183fs
LIHC	TCGA-DD-A1EG-01	exon_skip_143843 exon_skip_143841	30128475	30128606	30128491	30128491	Frame_Shift_Del	G	-	p.P183fs
LGG	TCGA-DU-6392-01	exon_skip_143843 exon_skip_143841	30128458	30128606	30128550	30128550	Nonsense_Mutation	G	A	p.R164*
LGG	TCGA-DU-6392-01	exon_skip_143843 exon_skip_143841	30128475	30128606	30128550	30128550	Nonsense_Mutation	G	A	p.R164*

- Depth of coverage in the three exons composing exon skipping event

Depth of coverage in three exons	Mutation description
	Sample: TCGA-DU-6392-01
	Cancer type: LGG
	ESID: exon_skip_143841
	Skipped exon start: 30128475
	Skipped exon end: 30128606
	Mutation start: 30128550
	Mutation end: 30128550
	Mutation type: Nonsense_Mutation
	Reference seq: G
	Mutation seq: A
	AAchange: p.R164*
	Sample: TCGA-DU-6392-01
	Cancer type: LGG
	ESID: exon_skip_143841
	Skipped exon start: 30128458
	Skipped exon end: 30128606
	Mutation start: 30128550
	Mutation end: 30128550
	Mutation type: Nonsense_Mutation
	Reference seq: G
	Mutation seq: A
	AAchange: p.R164*
exon_skip_106946_LGG_TCGA-DU-6392-01.png
exon_skip_114879_LGG_TCGA-DU-6392-01.png
exon_skip_120606_LGG_TCGA-DU-6392-01.png
exon_skip_130417_LGG_TCGA-DU-6392-01.png
exon_skip_138304_LGG_TCGA-DU-6392-01.png
exon_skip_143841_LGG_TCGA-DU-6392-01.png
exon_skip_143843_LGG_TCGA-DU-6392-01.png
exon_skip_145922_LGG_TCGA-DU-6392-01.png
exon_skip_155098_LGG_TCGA-DU-6392-01.png
exon_skip_26359_LGG_TCGA-DU-6392-01.png
exon_skip_290929_LGG_TCGA-DU-6392-01.png
exon_skip_297109_LGG_TCGA-DU-6392-01.png
exon_skip_33957_LGG_TCGA-DU-6392-01.png
exon_skip_343170_LGG_TCGA-DU-6392-01.png
exon_skip_354191_LGG_TCGA-DU-6392-01.png
exon_skip_367235_LGG_TCGA-DU-6392-01.png
exon_skip_423495_LGG_TCGA-DU-6392-01.png
exon_skip_423582_LGG_TCGA-DU-6392-01.png
exon_skip_430528_LGG_TCGA-DU-6392-01.png
exon_skip_432953_LGG_TCGA-DU-6392-01.png
exon_skip_436589_LGG_TCGA-DU-6392-01.png
exon_skip_438105_LGG_TCGA-DU-6392-01.png
exon_skip_438310_LGG_TCGA-DU-6392-01.png
exon_skip_442085_LGG_TCGA-DU-6392-01.png
exon_skip_481046_LGG_TCGA-DU-6392-01.png
exon_skip_484517_LGG_TCGA-DU-6392-01.png
exon_skip_502736_LGG_TCGA-DU-6392-01.png
exon_skip_512614_LGG_TCGA-DU-6392-01.png
exon_skip_7508_LGG_TCGA-DU-6392-01.png
exon_skip_7509_LGG_TCGA-DU-6392-01.png
exon_skip_79467_LGG_TCGA-DU-6392-01.png
exon_skip_85050_LGG_TCGA-DU-6392-01.png
exon_skip_95050_LGG_TCGA-DU-6392-01.png
exon_skip_95053_LGG_TCGA-DU-6392-01.png
	Sample: TCGA-DD-A1EG-01
	Cancer type: LIHC
	ESID: exon_skip_143841
	Skipped exon start: 30128475
	Skipped exon end: 30128606
	Mutation start: 30128491
	Mutation end: 30128491
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.P183fs
	Sample: TCGA-DD-A1EG-01
	Cancer type: LIHC
	ESID: exon_skip_143841
	Skipped exon start: 30128458
	Skipped exon end: 30128606
	Mutation start: 30128491
	Mutation end: 30128491
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.P183fs
exon_skip_103075_LIHC_TCGA-DD-A1EG-01.png
exon_skip_100809_LIHC_TCGA-DD-A1EG-01.png
exon_skip_101656_LIHC_TCGA-DD-A1EG-01.png
exon_skip_10700_LIHC_TCGA-DD-A1EG-01.png
exon_skip_109033_LIHC_TCGA-DD-A1EG-01.png
exon_skip_110000_LIHC_TCGA-DD-A1EG-01.png
exon_skip_110381_LIHC_TCGA-DD-A1EG-01.png
exon_skip_110545_LIHC_TCGA-DD-A1EG-01.png
exon_skip_11218_LIHC_TCGA-DD-A1EG-01.png
exon_skip_11256_LIHC_TCGA-DD-A1EG-01.png
exon_skip_11259_LIHC_TCGA-DD-A1EG-01.png
exon_skip_11263_LIHC_TCGA-DD-A1EG-01.png
exon_skip_115462_LIHC_TCGA-DD-A1EG-01.png
exon_skip_115587_LIHC_TCGA-DD-A1EG-01.png
exon_skip_116330_LIHC_TCGA-DD-A1EG-01.png
exon_skip_121002_LIHC_TCGA-DD-A1EG-01.png
exon_skip_123667_LIHC_TCGA-DD-A1EG-01.png
exon_skip_12440_LIHC_TCGA-DD-A1EG-01.png
exon_skip_125045_LIHC_TCGA-DD-A1EG-01.png
exon_skip_129202_LIHC_TCGA-DD-A1EG-01.png
exon_skip_129996_LIHC_TCGA-DD-A1EG-01.png
exon_skip_130099_LIHC_TCGA-DD-A1EG-01.png
exon_skip_13071_LIHC_TCGA-DD-A1EG-01.png
exon_skip_131505_LIHC_TCGA-DD-A1EG-01.png
exon_skip_131697_LIHC_TCGA-DD-A1EG-01.png
exon_skip_133542_LIHC_TCGA-DD-A1EG-01.png
exon_skip_133548_LIHC_TCGA-DD-A1EG-01.png
exon_skip_134792_LIHC_TCGA-DD-A1EG-01.png
exon_skip_135418_LIHC_TCGA-DD-A1EG-01.png
exon_skip_135741_LIHC_TCGA-DD-A1EG-01.png
exon_skip_135763_LIHC_TCGA-DD-A1EG-01.png
exon_skip_135820_LIHC_TCGA-DD-A1EG-01.png
exon_skip_13608_LIHC_TCGA-DD-A1EG-01.png
exon_skip_138255_LIHC_TCGA-DD-A1EG-01.png
exon_skip_138373_LIHC_TCGA-DD-A1EG-01.png
exon_skip_138947_LIHC_TCGA-DD-A1EG-01.png
exon_skip_140996_LIHC_TCGA-DD-A1EG-01.png
exon_skip_141914_LIHC_TCGA-DD-A1EG-01.png
exon_skip_143553_LIHC_TCGA-DD-A1EG-01.png
exon_skip_143841_LIHC_TCGA-DD-A1EG-01.png
exon_skip_143843_LIHC_TCGA-DD-A1EG-01.png
exon_skip_144075_LIHC_TCGA-DD-A1EG-01.png
exon_skip_144116_LIHC_TCGA-DD-A1EG-01.png
exon_skip_144125_LIHC_TCGA-DD-A1EG-01.png
exon_skip_146762_LIHC_TCGA-DD-A1EG-01.png
exon_skip_146776_LIHC_TCGA-DD-A1EG-01.png
exon_skip_146807_LIHC_TCGA-DD-A1EG-01.png
exon_skip_14772_LIHC_TCGA-DD-A1EG-01.png
exon_skip_148738_LIHC_TCGA-DD-A1EG-01.png
exon_skip_148740_LIHC_TCGA-DD-A1EG-01.png
exon_skip_14897_LIHC_TCGA-DD-A1EG-01.png
exon_skip_14899_LIHC_TCGA-DD-A1EG-01.png
exon_skip_15042_LIHC_TCGA-DD-A1EG-01.png
exon_skip_150985_LIHC_TCGA-DD-A1EG-01.png
exon_skip_153494_LIHC_TCGA-DD-A1EG-01.png
exon_skip_155021_LIHC_TCGA-DD-A1EG-01.png
exon_skip_16928_LIHC_TCGA-DD-A1EG-01.png
exon_skip_17317_LIHC_TCGA-DD-A1EG-01.png
exon_skip_17318_LIHC_TCGA-DD-A1EG-01.png
exon_skip_17943_LIHC_TCGA-DD-A1EG-01.png
exon_skip_18708_LIHC_TCGA-DD-A1EG-01.png
exon_skip_19048_LIHC_TCGA-DD-A1EG-01.png
exon_skip_1906_LIHC_TCGA-DD-A1EG-01.png
exon_skip_19372_LIHC_TCGA-DD-A1EG-01.png
exon_skip_19902_LIHC_TCGA-DD-A1EG-01.png
exon_skip_20061_LIHC_TCGA-DD-A1EG-01.png
exon_skip_22876_LIHC_TCGA-DD-A1EG-01.png
exon_skip_2523_LIHC_TCGA-DD-A1EG-01.png
exon_skip_26461_LIHC_TCGA-DD-A1EG-01.png
exon_skip_27038_LIHC_TCGA-DD-A1EG-01.png
exon_skip_27065_LIHC_TCGA-DD-A1EG-01.png
exon_skip_283878_LIHC_TCGA-DD-A1EG-01.png
exon_skip_284109_LIHC_TCGA-DD-A1EG-01.png
exon_skip_288112_LIHC_TCGA-DD-A1EG-01.png
exon_skip_290222_LIHC_TCGA-DD-A1EG-01.png
exon_skip_290223_LIHC_TCGA-DD-A1EG-01.png
exon_skip_29032_LIHC_TCGA-DD-A1EG-01.png
exon_skip_290_LIHC_TCGA-DD-A1EG-01.png
exon_skip_291361_LIHC_TCGA-DD-A1EG-01.png
exon_skip_291973_LIHC_TCGA-DD-A1EG-01.png
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	Sample: TCGA-DU-6392-01
	Cancer type: LGG
	ESID: exon_skip_143841
	Skipped exon start: 30128475
	Skipped exon end: 30128606
	Mutation start: 30128550
	Mutation end: 30128550
	Mutation type: Nonsense_Mutation
	Reference seq: G
	Mutation seq: A
	AAchange: p.R164*
	Sample: TCGA-DU-6392-01
	Cancer type: LGG
	ESID: exon_skip_143841
	Skipped exon start: 30128458
	Skipped exon end: 30128606
	Mutation start: 30128550
	Mutation end: 30128550
	Mutation type: Nonsense_Mutation
	Reference seq: G
	Mutation seq: A
	AAchange: p.R164*
exon_skip_106946_LGG_TCGA-DU-6392-01.png
exon_skip_114879_LGG_TCGA-DU-6392-01.png
exon_skip_120606_LGG_TCGA-DU-6392-01.png
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exon_skip_95050_LGG_TCGA-DU-6392-01.png
exon_skip_95053_LGG_TCGA-DU-6392-01.png
	Sample: TCGA-DD-A1EG-01
	Cancer type: LIHC
	ESID: exon_skip_143841
	Skipped exon start: 30128475
	Skipped exon end: 30128606
	Mutation start: 30128491
	Mutation end: 30128491
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.P183fs
	Sample: TCGA-DD-A1EG-01
	Cancer type: LIHC
	ESID: exon_skip_143841
	Skipped exon start: 30128458
	Skipped exon end: 30128606
	Mutation start: 30128491
	Mutation end: 30128491
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.P183fs
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exon_skip_66185_LIHC_TCGA-DD-A1EG-01.png
exon_skip_66376_LIHC_TCGA-DD-A1EG-01.png
exon_skip_66813_LIHC_TCGA-DD-A1EG-01.png
exon_skip_67402_LIHC_TCGA-DD-A1EG-01.png
exon_skip_67594_LIHC_TCGA-DD-A1EG-01.png
exon_skip_67918_LIHC_TCGA-DD-A1EG-01.png
exon_skip_68288_LIHC_TCGA-DD-A1EG-01.png
exon_skip_68407_LIHC_TCGA-DD-A1EG-01.png
exon_skip_68411_LIHC_TCGA-DD-A1EG-01.png
exon_skip_68522_LIHC_TCGA-DD-A1EG-01.png
exon_skip_68768_LIHC_TCGA-DD-A1EG-01.png
exon_skip_69056_LIHC_TCGA-DD-A1EG-01.png
exon_skip_70050_LIHC_TCGA-DD-A1EG-01.png
exon_skip_71400_LIHC_TCGA-DD-A1EG-01.png
exon_skip_77097_LIHC_TCGA-DD-A1EG-01.png
exon_skip_79815_LIHC_TCGA-DD-A1EG-01.png
exon_skip_81531_LIHC_TCGA-DD-A1EG-01.png
exon_skip_81532_LIHC_TCGA-DD-A1EG-01.png
exon_skip_822_LIHC_TCGA-DD-A1EG-01.png
exon_skip_82890_LIHC_TCGA-DD-A1EG-01.png
exon_skip_84090_LIHC_TCGA-DD-A1EG-01.png
exon_skip_86135_LIHC_TCGA-DD-A1EG-01.png
exon_skip_87721_LIHC_TCGA-DD-A1EG-01.png
exon_skip_87_LIHC_TCGA-DD-A1EG-01.png
exon_skip_93888_LIHC_TCGA-DD-A1EG-01.png
exon_skip_93891_LIHC_TCGA-DD-A1EG-01.png
exon_skip_94866_LIHC_TCGA-DD-A1EG-01.png
exon_skip_96939_LIHC_TCGA-DD-A1EG-01.png
exon_skip_9694_LIHC_TCGA-DD-A1EG-01.png
exon_skip_97667_LIHC_TCGA-DD-A1EG-01.png
exon_skip_98055_LIHC_TCGA-DD-A1EG-01.png
exon_skip_98056_LIHC_TCGA-DD-A1EG-01.png
exon_skip_99140_LIHC_TCGA-DD-A1EG-01.png

- Non-synonymous mutations located in the skipped exons in CCLE.

Sample	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
IM95_STOMACH	30128475	30128606	30128558	30128558	Missense_Mutation	A	G	p.M275T
IM95_STOMACH	30128458	30128606	30128558	30128558	Missense_Mutation	A	G	p.M275T
DU145_PROSTATE	30128475	30128606	30128570	30128570	Missense_Mutation	C	T	p.C271Y
DU145_PROSTATE	30128458	30128606	30128570	30128570	Missense_Mutation	C	T	p.C271Y
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	30129368	30129484	30129380	30129380	Missense_Mutation	C	T	p.M216I
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	30129420	30129484	30129419	30129419	Missense_Mutation	C	A	p.E203D
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	30129368	30129484	30129419	30129419	Missense_Mutation	C	A	p.E203D
SW756_CERVIX	30129420	30129484	30129439	30129439	Missense_Mutation	G	C	p.H197D
SW756_CERVIX	30129368	30129484	30129439	30129439	Missense_Mutation	G	C	p.H197D

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for MAPK3

sQTL information located at the skipped exons.

Exon skip ID

Chromosome

Three exons

Skippped exon

ENST

Cancer type

SNP id

Location

DNA change (ref/var)

P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MAPK3

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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MAPK3

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RelatedDrugs for MAPK3

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene	UniProtAcc	DrugBank ID	Drug name	Drug activity	Drug type	Drug status
	P27361	DB00605	Sulindac	Mitogen-activated protein kinase 3	small molecule	approved\|investigational
	P27361	DB01169	Arsenic trioxide	Mitogen-activated protein kinase 3	small molecule	approved\|investigational
	P27361	DB08862	Cholecystokinin	Mitogen-activated protein kinase 3	small molecule	approved\|investigational

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RelatedDiseases for MAPK3

Diseases associated with this gene.
(DisGeNet 4.0)

Gene	Disease ID	Disease name	# pubmeds	Source
MAPK3	C0011570	Mental Depression	5	PSYGENET
MAPK3	C0011581	Depressive disorder	5	PSYGENET
MAPK3	C0020429	Hyperalgesia	2	CTD_human
MAPK3	C0024121	Lung Neoplasms	2	CTD_human
MAPK3	C0036341	Schizophrenia	2	PSYGENET
MAPK3	C0007137	Squamous cell carcinoma	1	CTD_human
MAPK3	C0007786	Brain Ischemia	1	CTD_human
MAPK3	C0017639	Gliosis	1	CTD_human
MAPK3	C0018671	Head and Neck Neoplasms	1	CTD_human
MAPK3	C0020564	Hypertrophy	1	CTD_human
MAPK3	C0021361	Female infertility	1	CTD_human
MAPK3	C0022665	Kidney Neoplasm	1	CTD_human
MAPK3	C0027626	Neoplasm Invasiveness	1	CTD_human
MAPK3	C0027627	Neoplasm Metastasis	1	CTD_human
MAPK3	C0027746	Nerve Degeneration	1	CTD_human
MAPK3	C0033578	Prostatic Neoplasms	1	CTD_human
MAPK3	C0038356	Stomach Neoplasms	1	CTD_human
MAPK3	C0038587	Substance Withdrawal Syndrome	1	CTD_human
MAPK3	C0040997	Trigeminal Neuralgia	1	CTD_human
MAPK3	C0155862	Streptococcal pneumonia	1	CTD_human
MAPK3	C0236736	Cocaine-Related Disorders	1	CTD_human
MAPK3	C0243026	Sepsis	1	CTD_human
MAPK3	C0333641	Atrophic	1	CTD_human
MAPK3	C0878544	Cardiomyopathies	1	CTD_human
MAPK3	C0919267	ovarian neoplasm	1	CTD_human
MAPK3	C1866282	CEROID LIPOFUSCINOSIS, NEURONAL, 6	1	CTD_human

	Gene summary
	Gene structures and expression levels
	Exon skipping events with PSIs in TCGA
	Exon skipping events with PSIs in GTEx
	Open reading frame (ORF) annotation in the exon skipping event
	Exon skipping events in the canonical protein sequence
	SNVs in the skipped exons with depth of coverage
	Splicing Quantitative Trait Loci (sQTLs) in the skipped exons
	Splicing Quantitative Trait Methylation (sQTM) in the skipped exon
	Related drugs with this gene
	Related diseases with this gene

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