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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for MCTP2

check button Gene summary
Gene informationGene symbol

MCTP2

Gene ID

55784

Gene namemultiple C2 and transmembrane domain containing 2
Synonyms-
Cytomap

15q26.2

Type of geneprotein-coding
Descriptionmultiple C2 and transmembrane domain-containing protein 2multiple C2 domains, transmembrane 2multiple C2-domains with two transmembrane regions 2 1
Modification date20180523
UniProtAcc

Q6DN12

ContextPubMed: MCTP2 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for MCTP2 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for MCTP2

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for MCTP2

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_1251701594774800:94774893:94821382:94821492:94841429:9484195994821382:94821492ENSG00000140563.10ENST00000561608.1
exon_skip_1251751594857510:94857573:94857955:94858093:94858757:9485886694857955:94858093ENSG00000140563.10ENST00000456504.1
exon_skip_1251761594884041:94884153:94888357:94888393:94899365:9489953094888357:94888393ENSG00000140563.10ENST00000456504.1,ENST00000451018.3,ENST00000331706.4,ENST00000543482.1,ENST00000357742.4
exon_skip_1251771594899365:94899530:94901710:94901841:94910833:9491102094901710:94901841ENSG00000140563.10ENST00000456504.1,ENST00000451018.3,ENST00000331706.4,ENST00000357742.4
exon_skip_1251781594899365:94899530:94901775:94901841:94910833:9491102094901775:94901841ENSG00000140563.10ENST00000557742.1
exon_skip_1251821594945128:94945248:94983404:94983527:94986147:9498618994983404:94983527ENSG00000140563.10ENST00000456504.1,ENST00000357742.4
exon_skip_1251861594945128:94945248:95001365:95001475:95013561:9501367195001365:95001475ENSG00000140563.10ENST00000451018.3
exon_skip_1251871594983404:94983527:94986147:94986189:95001365:9500147594986147:94986189ENSG00000140563.10ENST00000456504.1,ENST00000357742.4
exon_skip_1251891594986147:94986189:95001365:95001475:95013561:9501367195001365:95001475ENSG00000140563.10ENST00000456504.1,ENST00000357742.4
exon_skip_1251901595001365:95001475:95013561:95013671:95019924:9502002295013561:95013671ENSG00000140563.10ENST00000456504.1,ENST00000451018.3,ENST00000357742.4
exon_skip_1251921595013561:95013671:95019924:95020022:95022194:9502226395019924:95020022ENSG00000140563.10ENST00000456504.1,ENST00000451018.3,ENST00000357742.4

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for MCTP2

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_1251701594774800:94774893:94821382:94821492:94841429:9484195994821382:94821492ENSG00000140563.10ENST00000561608.1
exon_skip_1251751594857510:94857573:94857955:94858093:94858757:9485886694857955:94858093ENSG00000140563.10ENST00000456504.1
exon_skip_1251761594884041:94884153:94888357:94888393:94899365:9489953094888357:94888393ENSG00000140563.10ENST00000543482.1,ENST00000456504.1,ENST00000331706.4,ENST00000451018.3,ENST00000357742.4
exon_skip_1251771594899365:94899530:94901710:94901841:94910833:9491102094901710:94901841ENSG00000140563.10ENST00000456504.1,ENST00000331706.4,ENST00000451018.3,ENST00000357742.4
exon_skip_1251781594899365:94899530:94901775:94901841:94910833:9491102094901775:94901841ENSG00000140563.10ENST00000557742.1
exon_skip_1251821594945128:94945248:94983404:94983527:94986147:9498618994983404:94983527ENSG00000140563.10ENST00000456504.1,ENST00000357742.4
exon_skip_1251861594945128:94945248:95001365:95001475:95013561:9501367195001365:95001475ENSG00000140563.10ENST00000451018.3
exon_skip_1251871594983404:94983527:94986147:94986189:95001365:9500147594986147:94986189ENSG00000140563.10ENST00000456504.1,ENST00000357742.4
exon_skip_1251891594986147:94986189:95001365:95001475:95013561:9501367195001365:95001475ENSG00000140563.10ENST00000456504.1,ENST00000357742.4
exon_skip_1251921595013561:95013671:95019924:95020022:95022194:9502226395019924:95020022ENSG00000140563.10ENST00000456504.1,ENST00000451018.3,ENST00000357742.4

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for MCTP2

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003577429490171094901841Frame-shift
ENST000003577429500136595001475Frame-shift
ENST000003577429501356195013671Frame-shift
ENST000003577429501992495020022Frame-shift
ENST000003577429488835794888393In-frame
ENST000003577429498340494983527In-frame
ENST000003577429498614794986189In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003577429490171094901841Frame-shift
ENST000003577429500136595001475Frame-shift
ENST000003577429501992495020022Frame-shift
ENST000003577429488835794888393In-frame
ENST000003577429498340494983527In-frame
ENST000003577429498614794986189In-frame

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Infer the effects of exon skipping event on protein functional features for MCTP2

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000357742398287894888357948883939701005323335
ENST000003577423982878949834049498352720862208695736
ENST000003577423982878949861479498618922092250736750

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000357742398287894888357948883939701005323335
ENST000003577423982878949834049498352720862208695736
ENST000003577423982878949861479498618922092250736750

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q6DN123233351412Alternative sequenceID=VSP_026662;Note=In isoform 3 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334
Q6DN12323335200878Alternative sequenceID=VSP_038982;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN123233351878ChainID=PRO_0000294472;Note=Multiple C2 and transmembrane domain-containing protein 2
Q6DN12695736200878Alternative sequenceID=VSP_038982;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12695736696750Alternative sequenceID=VSP_026664;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12695736696718Alternative sequenceID=VSP_026665;Note=In isoform 4. VFLITVWNFELYMIPLALLLIFV->HRKEEPPLSMKCTLFSGDIGPSL;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12695736719878Alternative sequenceID=VSP_026666;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN126957361878ChainID=PRO_0000294472;Note=Multiple C2 and transmembrane domain-containing protein 2
Q6DN12695736695695Natural variantID=VAR_073427;Note=Found in a patient with left-sided obstructive cardiac lesions%3B unknown pathological significance. A->V;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23773997;Dbxref=dbSNP:rs370153540,PMID:23773997
Q6DN12695736697717TransmembraneNote=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q6DN12736750200878Alternative sequenceID=VSP_038982;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12736750696750Alternative sequenceID=VSP_026664;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12736750719878Alternative sequenceID=VSP_026666;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN127367501878ChainID=PRO_0000294472;Note=Multiple C2 and transmembrane domain-containing protein 2


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q6DN123233351412Alternative sequenceID=VSP_026662;Note=In isoform 3 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334;Dbxref=PMID:14702039,PMID:15489334
Q6DN12323335200878Alternative sequenceID=VSP_038982;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN123233351878ChainID=PRO_0000294472;Note=Multiple C2 and transmembrane domain-containing protein 2
Q6DN12695736200878Alternative sequenceID=VSP_038982;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12695736696750Alternative sequenceID=VSP_026664;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12695736696718Alternative sequenceID=VSP_026665;Note=In isoform 4. VFLITVWNFELYMIPLALLLIFV->HRKEEPPLSMKCTLFSGDIGPSL;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12695736719878Alternative sequenceID=VSP_026666;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN126957361878ChainID=PRO_0000294472;Note=Multiple C2 and transmembrane domain-containing protein 2
Q6DN12695736695695Natural variantID=VAR_073427;Note=Found in a patient with left-sided obstructive cardiac lesions%3B unknown pathological significance. A->V;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23773997;Dbxref=dbSNP:rs370153540,PMID:23773997
Q6DN12695736697717TransmembraneNote=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q6DN12736750200878Alternative sequenceID=VSP_038982;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12736750696750Alternative sequenceID=VSP_026664;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN12736750719878Alternative sequenceID=VSP_026666;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6DN127367501878ChainID=PRO_0000294472;Note=Multiple C2 and transmembrane domain-containing protein 2


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SNVs in the skipped exons for MCTP2

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
MCTP2_SKCM_exon_skip_125176_psi_boxplot.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A1EG-01exon_skip_125182
94983405949835279498342894983428Frame_Shift_DelT-p.N703fs
LIHCTCGA-DD-A39Y-01exon_skip_125182
94983405949835279498349594983495Frame_Shift_DelA-p.K726fs
KIRPTCGA-5P-A9KH-01exon_skip_125189
exon_skip_125186
95001366950014759500147595001477Frame_Shift_DelAGT-p.787_787del
KIRCTCGA-B8-4154-01exon_skip_125190
95013562950136719501358095013580Frame_Shift_DelC-p.V793fs
LIHCTCGA-DD-A1EG-01exon_skip_125190
95013562950136719501358895013588Frame_Shift_DelT-p.L796fs
LIHCTCGA-G3-A3CJ-01exon_skip_125190
95013562950136719501366095013660Frame_Shift_DelT-p.I820fs
STADTCGA-BR-8382-01exon_skip_125178
exon_skip_125177
94901711949018419490180194901802Frame_Shift_Ins-Gp.W421fs
STADTCGA-BR-8382-01exon_skip_125178
exon_skip_125177
94901776949018419490180194901802Frame_Shift_Ins-Gp.W421fs
STADTCGA-BR-8382-01exon_skip_125178
exon_skip_125177
94901711949018419490180294901803Frame_Shift_Ins-Gp.W421fs
STADTCGA-BR-8382-01exon_skip_125178
exon_skip_125177
94901776949018419490180294901803Frame_Shift_Ins-Gp.W421fs
LIHCTCGA-BC-A112-01exon_skip_125189
exon_skip_125186
95001366950014759500137995001380Frame_Shift_Ins-Gp.R755fs
SKCMTCGA-EE-A181-06exon_skip_125182
94983405949835279498342594983425Nonsense_MutationGAp.W702*
SKCMTCGA-EE-A181-06exon_skip_125182
94983405949835279498342594983425Nonsense_MutationGAp.W702X
COADTCGA-AZ-4315-01exon_skip_125192
95019925950200229501995195019951Nonsense_MutationCTp.R778X
SKCMTCGA-FW-A3R5-06exon_skip_125176
94888358948883939488839494888394Splice_SiteGA.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
MCTP2_94884041_94884153_94888357_94888393_94899365_94899530_TCGA-FW-A3R5-06Sample: TCGA-FW-A3R5-06
Cancer type: SKCM
ESID: exon_skip_125176
Skipped exon start: 94888358
Skipped exon end: 94888393
Mutation start: 94888394
Mutation end: 94888394
Mutation type: Splice_Site
Reference seq: G
Mutation seq: A
AAchange: .
exon_skip_104729_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_108215_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_109629_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_109632_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_109646_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_125176_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_285563_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_285564_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_301134_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_305744_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_311969_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_333572_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_340640_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_361593_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_432257_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_433410_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_456052_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_457524_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_58343_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_96282_SKCM_TCGA-FW-A3R5-06.png
boxplot
exon_skip_96283_SKCM_TCGA-FW-A3R5-06.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
SKMEL24_SKIN94901711949018419490174494901744Missense_MutationGAp.E402K
BICR18_UPPER_AERODIGESTIVE_TRACT94901776949018419490181494901814Missense_MutationAGp.N425S
BICR18_UPPER_AERODIGESTIVE_TRACT94901711949018419490181494901814Missense_MutationAGp.N425S
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE94901776949018419490181494901814Missense_MutationAGp.N425S
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE94901711949018419490181494901814Missense_MutationAGp.N425S
CAS1_CENTRAL_NERVOUS_SYSTEM94901776949018419490183294901832Missense_MutationGAp.R431H
CAS1_CENTRAL_NERVOUS_SYSTEM94901711949018419490183294901832Missense_MutationGAp.R431H
NCIH1703_LUNG94983405949835279498342094983420Missense_MutationGCp.V701L
A375_SKIN94986148949861899498615094986150Missense_MutationGTp.E737D
ONS76_CENTRAL_NERVOUS_SYSTEM94986148949861899498616094986160Missense_MutationAGp.I741V
LS411N_LARGE_INTESTINE95001366950014759500137995001379Missense_MutationAGp.K755R
HT3_CERVIX95001366950014759500138695001386Missense_MutationGCp.L757F
LC2AD_LUNG95001366950014759500142995001429Missense_MutationCGp.Q772E
SNU81_LARGE_INTESTINE95001366950014759500145495001454Missense_MutationCAp.S780Y
NCIH1573_LUNG95001366950014759500146395001463Missense_MutationATp.E783V
SLVL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE95013562950136719501359495013594Missense_MutationCAp.S798Y
HCT15_LARGE_INTESTINE95013562950136719501362195013621Missense_MutationCTp.A807V
MKN74_STOMACH95013562950136719501364495013644Missense_MutationCAp.P815T
MKN28_STOMACH95013562950136719501364495013644Missense_MutationCAp.P815T
SF268_CENTRAL_NERVOUS_SYSTEM95019925950200229501993295019932Missense_MutationTAp.N826K
JHUEM7_ENDOMETRIUM95019925950200229501993795019937Missense_MutationTGp.F828C
HEC1A_ENDOMETRIUM95019925950200229501994095019940Missense_MutationCAp.T829N
SKN_ENDOMETRIUM95019925950200229501995295019952Missense_MutationGAp.R833Q
JHUEM7_ENDOMETRIUM95019925950200229501995295019952Missense_MutationGAp.R833Q
NO10_CENTRAL_NERVOUS_SYSTEM95019925950200229502000995020009Missense_MutationCAp.S852Y
SKOV3_OVARY94901711949018419490174194901741Nonsense_MutationCTp.Q401*
HCT116_LARGE_INTESTINE94888358948883939488835894888358Splice_SiteCTp.R324C

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for MCTP2

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MCTP2


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MCTP2


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RelatedDrugs for MCTP2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MCTP2

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
MCTP2C0036341Schizophrenia1PSYGENET
MCTP2C0041696Unipolar Depression1PSYGENET
MCTP2C1269683Major Depressive Disorder1PSYGENET