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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for STRBP

check button Gene summary
Gene informationGene symbol

STRBP

Gene ID

55342

Gene namespermatid perinuclear RNA binding protein
SynonymsHEL162|ILF3L|SPNR|p74
Cytomap

9q33.3

Type of geneprotein-coding
Descriptionspermatid perinuclear RNA-binding proteinepididymis luminal protein 162
Modification date20180523
UniProtAcc

Q96SI9

ContextPubMed: STRBP [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for STRBP from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for STRBP

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for STRBP

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_5067139125871792:125872032:125878042:125878162:125884471:125884605125878042:125878162ENSG00000165209.14ENST00000478973.2
exon_skip_5067159125871835:125872032:125878207:125878377:125890492:125890537125878207:125878377ENSG00000165209.14ENST00000471564.2
exon_skip_5067219125887498:125887952:125890492:125890537:125895123:125895246125890492:125890537ENSG00000165209.14ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2
exon_skip_5067229125895123:125895247:125898319:125898460:125898659:125898782125898319:125898460ENSG00000165209.14ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2
exon_skip_5067239125898319:125898460:125898659:125898794:125901807:125901966125898659:125898794ENSG00000165209.14ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2
exon_skip_5067259125898659:125898794:125901807:125901966:125909133:125909333125901807:125901966ENSG00000165209.14ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2
exon_skip_5067279125910056:125910149:125920290:125920402:125920610:125920708125920290:125920402ENSG00000165209.14ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2
exon_skip_5067289125920610:125920708:125921374:125921486:125922645:125922741125921374:125921486ENSG00000165209.14ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2
exon_skip_5067299125921374:125921486:125922645:125922741:125923255:125923347125922645:125922741ENSG00000165209.14ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2
exon_skip_5067309125923255:125923347:125930467:125930537:125932180:125932325125930467:125930537ENSG00000165209.14ENST00000407982.2
exon_skip_5067319125932180:125932325:125935955:125936113:125941285:125941506125935955:125936113ENSG00000165209.14ENST00000407982.2
exon_skip_5067329125932180:125932325:125935955:125936121:125941285:125941506125935955:125936121ENSG00000165209.14ENST00000348403.5,ENST00000447404.2,ENST00000360998.3
exon_skip_5067349125935955:125936121:125941285:125941506:125946410:125946577125941285:125941506ENSG00000165209.14ENST00000348403.5,ENST00000447404.2
exon_skip_5067379125941407:125941506:125943146:125943254:125946410:125946577125943146:125943254ENSG00000165209.14ENST00000360998.3
exon_skip_5067399125946410:125946577:125999108:125999245:126030714:126030843125999108:125999245ENSG00000165209.14ENST00000348403.5

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for STRBP

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_5067159125871835:125872032:125878207:125878377:125890492:125890537125878207:125878377ENSG00000165209.14ENST00000471564.2
exon_skip_5067219125887498:125887952:125890492:125890537:125895123:125895246125890492:125890537ENSG00000165209.14ENST00000447404.2,ENST00000348403.5,ENST00000360998.3,ENST00000407982.2
exon_skip_5067229125895123:125895247:125898319:125898460:125898659:125898782125898319:125898460ENSG00000165209.14ENST00000447404.2,ENST00000348403.5,ENST00000360998.3,ENST00000407982.2
exon_skip_5067239125898319:125898460:125898659:125898794:125901807:125901966125898659:125898794ENSG00000165209.14ENST00000447404.2,ENST00000348403.5,ENST00000360998.3,ENST00000407982.2
exon_skip_5067259125898659:125898794:125901807:125901966:125909133:125909333125901807:125901966ENSG00000165209.14ENST00000447404.2,ENST00000348403.5,ENST00000360998.3,ENST00000407982.2
exon_skip_5067279125910056:125910149:125920290:125920402:125920610:125920708125920290:125920402ENSG00000165209.14ENST00000447404.2,ENST00000348403.5,ENST00000360998.3,ENST00000407982.2
exon_skip_5067289125920610:125920708:125921374:125921486:125922645:125922741125921374:125921486ENSG00000165209.14ENST00000447404.2,ENST00000348403.5,ENST00000360998.3,ENST00000407982.2
exon_skip_5067299125921374:125921486:125922645:125922741:125923255:125923347125922645:125922741ENSG00000165209.14ENST00000447404.2,ENST00000348403.5,ENST00000360998.3,ENST00000407982.2
exon_skip_5067309125923255:125923347:125930467:125930537:125932180:125932325125930467:125930537ENSG00000165209.14ENST00000407982.2
exon_skip_5067319125932180:125932325:125935955:125936113:125941285:125941506125935955:125936113ENSG00000165209.14ENST00000407982.2
exon_skip_5067329125932180:125932325:125935955:125936121:125941285:125941506125935955:125936121ENSG00000165209.14ENST00000447404.2,ENST00000348403.5,ENST00000360998.3
exon_skip_5067349125935955:125936121:125941285:125941506:125946410:125946577125941285:125941506ENSG00000165209.14ENST00000447404.2,ENST00000348403.5
exon_skip_5067379125941407:125941506:125943146:125943254:125946410:125946577125943146:125943254ENSG00000165209.14ENST00000360998.3
exon_skip_5067389125946410:125946577:125974863:125974987:125975867:125976187125974863:125974987ENSG00000165209.14ENST00000479114.2
exon_skip_5067399125946410:125946577:125999108:125999245:126030714:126030843125999108:125999245ENSG00000165209.14ENST00000348403.5

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for STRBP

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003484031259991081259992453UTR-3UTR
ENST00000348403125920290125920402Frame-shift
ENST00000447404125920290125920402Frame-shift
ENST00000348403125921374125921486Frame-shift
ENST00000447404125921374125921486Frame-shift
ENST00000348403125935955125936121Frame-shift
ENST00000447404125935955125936121Frame-shift
ENST00000348403125941285125941506Frame-shift
ENST00000447404125941285125941506Frame-shift
ENST00000348403125890492125890537In-frame
ENST00000447404125890492125890537In-frame
ENST00000348403125898319125898460In-frame
ENST00000447404125898319125898460In-frame
ENST00000348403125898659125898794In-frame
ENST00000447404125898659125898794In-frame
ENST00000348403125901807125901966In-frame
ENST00000447404125901807125901966In-frame
ENST00000348403125922645125922741In-frame
ENST00000447404125922645125922741In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003484031259991081259992453UTR-3UTR
ENST00000348403125920290125920402Frame-shift
ENST00000447404125920290125920402Frame-shift
ENST00000348403125921374125921486Frame-shift
ENST00000447404125921374125921486Frame-shift
ENST00000348403125935955125936121Frame-shift
ENST00000447404125935955125936121Frame-shift
ENST00000348403125941285125941506Frame-shift
ENST00000447404125941285125941506Frame-shift
ENST00000348403125890492125890537In-frame
ENST00000447404125890492125890537In-frame
ENST00000348403125898319125898460In-frame
ENST00000447404125898319125898460In-frame
ENST00000348403125898659125898794In-frame
ENST00000447404125898659125898794In-frame
ENST00000348403125901807125901966In-frame
ENST00000447404125901807125901966In-frame
ENST00000348403125922645125922741In-frame
ENST00000447404125922645125922741In-frame

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Infer the effects of exon skipping event on protein functional features for STRBP

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000348403335267212592264512592274110581153209241
ENST0000044740463076721259226451259227419331028209241
ENST00000348403335267212590180712590196617691927446499
ENST00000447404630767212590180712590196616441802446499
ENST00000348403335267212589865912589879419282062499544
ENST00000447404630767212589865912589879418031937499544
ENST00000348403335267212589831912589846020632203544591
ENST00000447404630767212589831912589846019382078544591
ENST00000348403335267212589049212589053723282372632647
ENST00000447404630767212589049212589053722032247632647

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000348403335267212592264512592274110581153209241
ENST0000044740463076721259226451259227419331028209241
ENST00000348403335267212590180712590196617691927446499
ENST00000447404630767212590180712590196616441802446499
ENST00000348403335267212589865912589879419282062499544
ENST00000447404630767212589865912589879418031937499544
ENST00000348403335267212589831912589846020632203544591
ENST00000447404630767212589831912589846019382078544591
ENST00000348403335267212589049212589053723282372632647
ENST00000447404630767212589049212589053722032247632647

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q96SI92092411672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI92092411672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI92092415363DomainNote=DZF;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01040
Q96SI92092415363DomainNote=DZF;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01040
Q96SI94464991672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI94464991672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI9446499387453DomainNote=DRBM 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI9446499387453DomainNote=DRBM 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI9446499436451HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2DMY
Q96SI9446499436451HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2DMY
Q96SI94995441672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI94995441672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI9499544510576DomainNote=DRBM 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI9499544510576DomainNote=DRBM 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI95445911672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI95445911672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI9544591584587Compositional biasNote=Poly-Lys
Q96SI9544591584587Compositional biasNote=Poly-Lys
Q96SI9544591510576DomainNote=DRBM 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI9544591510576DomainNote=DRBM 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI96326471672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI96326471672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q96SI92092411672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI92092411672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI92092415363DomainNote=DZF;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01040
Q96SI92092415363DomainNote=DZF;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01040
Q96SI94464991672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI94464991672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI9446499387453DomainNote=DRBM 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI9446499387453DomainNote=DRBM 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI9446499436451HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2DMY
Q96SI9446499436451HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2DMY
Q96SI94995441672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI94995441672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI9499544510576DomainNote=DRBM 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI9499544510576DomainNote=DRBM 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI95445911672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI95445911672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI9544591584587Compositional biasNote=Poly-Lys
Q96SI9544591584587Compositional biasNote=Poly-Lys
Q96SI9544591510576DomainNote=DRBM 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI9544591510576DomainNote=DRBM 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00266
Q96SI96326471672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein
Q96SI96326471672ChainID=PRO_0000274917;Note=Spermatid perinuclear RNA-binding protein


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SNVs in the skipped exons for STRBP

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A3A0-01exon_skip_506723
125898660125898794125898728125898728Frame_Shift_DelT-p.R523fs
LIHCTCGA-G3-A3CJ-01exon_skip_506723
125898660125898794125898728125898728Frame_Shift_DelT-p.R523fs
LUADTCGA-78-7536-01exon_skip_506731
125935956125936113125935997125935997Frame_Shift_DelG-p.L117fs
LUADTCGA-78-7536-01exon_skip_506731
125935956125936113125935997125935997Frame_Shift_DelG-p.L118fs
LUADTCGA-78-7536-01exon_skip_506732
125935956125936121125935997125935997Frame_Shift_DelG-p.L117fs
LUADTCGA-78-7536-01exon_skip_506732
125935956125936121125935997125935997Frame_Shift_DelG-p.L118fs
BLCATCGA-CF-A3MG-01exon_skip_506722
125898320125898460125898322125898322Nonsense_MutationGAp.Q591*
UCECTCGA-D1-A17Q-01exon_skip_506727
125920291125920402125920294125920294Nonsense_MutationCAp.E348*
READTCGA-AG-A002-01exon_skip_506734
125941286125941506125941323125941323Nonsense_MutationCAp.E49X
UCECTCGA-BG-A0M8-01exon_skip_506722
125898320125898460125898446125898461Splice_SiteTCCATCTACTTCTACC-p.V545_splice
UCECTCGA-B5-A0JY-01exon_skip_506729
125922646125922741125922743125922743Splice_SiteTCe6-2

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
STRBP_125921374_125921486_125922645_125922741_125923255_125923347_TCGA-B5-A0JY-01Sample: TCGA-B5-A0JY-01
Cancer type: UCEC
ESID: exon_skip_506729
Skipped exon start: 125922646
Skipped exon end: 125922741
Mutation start: 125922743
Mutation end: 125922743
Mutation type: Splice_Site
Reference seq: T
Mutation seq: C
AAchange: e6-2
exon_skip_2333_UCEC_TCGA-B5-A0JY-01.png
boxplot
exon_skip_354315_UCEC_TCGA-B5-A0JY-01.png
boxplot
exon_skip_382353_UCEC_TCGA-B5-A0JY-01.png
boxplot
exon_skip_467199_UCEC_TCGA-B5-A0JY-01.png
boxplot
exon_skip_506729_UCEC_TCGA-B5-A0JY-01.png
boxplot
exon_skip_517484_UCEC_TCGA-B5-A0JY-01.png
boxplot
exon_skip_517493_UCEC_TCGA-B5-A0JY-01.png
boxplot
exon_skip_57854_UCEC_TCGA-B5-A0JY-01.png
boxplot
exon_skip_64094_UCEC_TCGA-B5-A0JY-01.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
TOV21G_OVARY125941286125941506125941338125941338Frame_Shift_DelT-p.T58fs
U118MG_CENTRAL_NERVOUS_SYSTEM125890493125890537125890495125890495Missense_MutationTCp.Y647C
HCC2998_LARGE_INTESTINE125898320125898460125898377125898377Missense_MutationCAp.E572D
CW2_LARGE_INTESTINE125901808125901966125901870125901870Missense_MutationCTp.V479M
NCIH1155_LUNG125901808125901966125901929125901929Missense_MutationGAp.A459V
MCC13_SKIN125901808125901966125901945125901945Missense_MutationGAp.P454S
HEC251_ENDOMETRIUM125920291125920402125920295125920295Missense_MutationTGp.K347N
TCYIK_CERVIX125921375125921486125921413125921413Missense_MutationCGp.R266P
RH30_SOFT_TISSUE125922646125922741125922685125922685Missense_MutationCGp.L228F
SJRH30_SOFT_TISSUE125922646125922741125922685125922685Missense_MutationCGp.L228F
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE125922646125922741125922701125922701Missense_MutationCTp.R223H
IPC298_SKIN125935956125936121125935969125935969Missense_MutationGAp.P126L
IPC298_SKIN125935956125936113125935969125935969Missense_MutationGAp.P126L
IM95_STOMACH125941286125941506125941475125941475Missense_MutationCTp.R12H
SNU1040_LARGE_INTESTINE125941286125941506125941475125941475Missense_MutationCTp.R12H
BT474_BREAST125898320125898460125898322125898322Nonsense_MutationGAp.Q591*
SW872_SOFT_TISSUE125920291125920402125920367125920367Nonsense_MutationGTp.Y323*
HCT116_LARGE_INTESTINE125920291125920402125920375125920375Nonsense_MutationGAp.Q321*
GP2D_LARGE_INTESTINE125901808125901966125901965125901965Splice_SiteAGp.V447A
NB17_AUTONOMIC_GANGLIA125935956125936121125936120125936120Splice_SiteCAp.D76Y

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for STRBP

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value
exon_skip_5067279125910056:125910149:125920290:125920402:125920610:125920708125920290:125920402ENST00000348403.5,ENST00000447404.2,ENST00000360998.3,ENST00000407982.2LGGrs803736chr9:125920376G/A8.56e-05
exon_skip_5067399125946410:125946577:125999108:125999245:126030714:126030843125999108:125999245ENST00000348403.5COADrs72616646chr9:125999117G/A2.51e-11
exon_skip_5067399125946410:125946577:125999108:125999245:126030714:126030843125999108:125999245ENST00000348403.5KICHrs72616646chr9:125999117G/A1.25e-04
exon_skip_5067399125946410:125946577:125999108:125999245:126030714:126030843125999108:125999245ENST00000348403.5LGGrs72616646chr9:125999117G/A3.93e-15
exon_skip_5067399125946410:125946577:125999108:125999245:126030714:126030843125999108:125999245ENST00000348403.5LUADrs72616646chr9:125999117G/A2.28e-08
exon_skip_5067399125946410:125946577:125999108:125999245:126030714:126030843125999108:125999245ENST00000348403.5PRADrs72616646chr9:125999117G/A3.34e-10

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for STRBP


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for STRBP


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RelatedDrugs for STRBP

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for STRBP

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource