ExonSkipDB: functional annotation of exon skipping event in human

Gene summary for RBM23

Gene summary

Gene information	Gene symbol	RBM23
	Gene ID	55147
	Gene name	RNA binding motif protein 23
	Synonyms	CAPERbeta\|PP239\|RNPC4
	Cytomap	14q11.2
	Type of gene	protein-coding
	Description	probable RNA-binding protein 23RNA-binding region (RNP1, RRM) containing 4RNA-binding region-containing protein 4coactivator of activating protein-1 and estrogen recep- tors betasplicing factor SF2
	Modification date	20180523
	UniProtAcc	Q86U06
	Context	PubMed: RBM23 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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Exon skipping events across known transcript of Ensembl for RBM23 from UCSC genome browser

Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Gene isoform structures and expression levels for RBM23

Expression levels of gene isoforms across TCGA.

Expression levels of gene isoforms across GTEx.

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Exon skipping events with PSIs in TCGA for RBM23

Information of exkip skipping event in TCGA.

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_111427	14	23370788:23370942:23371022:23371092:23371188:23371308	23371022:23371092	ENSG00000100461.13	ENST00000399922.2,ENST00000346528.5,ENST00000359890.3,ENST00000557667.1,ENST00000542016.2,ENST00000556838.1,ENST00000553884.1,ENST00000555209.1
exon_skip_111430	14	23374302:23374430:23374544:23374662:23375403:23375577	23374544:23374662	ENSG00000100461.13	ENST00000555209.1
exon_skip_111433	14	23374366:23374455:23374544:23374662:23375403:23375577	23374544:23374662	ENSG00000100461.13	ENST00000346528.5,ENST00000557403.1
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENSG00000100461.13	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2
exon_skip_111439	14	23374814:23374868:23375403:23375577:23377541:23377589	23375403:23375577	ENSG00000100461.13	ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000557667.1
exon_skip_111440	14	23375558:23375577:23377541:23377589:23378691:23378804	23377541:23377589	ENSG00000100461.13	ENST00000307814.6,ENST00000554955.1,ENST00000359890.3,ENST00000556862.1,ENST00000554256.1,ENST00000557667.1
exon_skip_111441	14	23375558:23375577:23377541:23377589:23380536:23380612	23377541:23377589	ENSG00000100461.13	ENST00000555714.1,ENST00000553920.1
exon_skip_111443	14	23375558:23375577:23377541:23377608:23378691:23378804	23377541:23377608	ENSG00000100461.13	ENST00000556984.1
exon_skip_111444	14	23375558:23375577:23378691:23378804:23380536:23380612	23378691:23378804	ENSG00000100461.13	ENST00000399922.2,ENST00000346528.5,ENST00000555676.1,ENST00000557571.1,ENST00000556687.1,ENST00000557549.1,ENST00000557464.1
exon_skip_111445	14	23375558:23375577:23378691:23378804:23388207:23388296	23378691:23378804	ENSG00000100461.13	ENST00000557403.1
exon_skip_111447	14	23375558:23375577:23380536:23380612:23388207:23388296	23380536:23380612	ENSG00000100461.13	ENST00000557227.1,ENST00000542016.2,ENST00000553902.1
exon_skip_111456	14	23377541:23377589:23378691:23378804:23380536:23380612	23378691:23378804	ENSG00000100461.13	ENST00000307814.6,ENST00000554955.1,ENST00000554618.1,ENST00000359890.3,ENST00000556862.1,ENST00000554256.1,ENST00000557667.1
exon_skip_111458	14	23377541:23377589:23380536:23380612:23388207:23388296	23380536:23380612	ENSG00000100461.13	ENST00000555714.1,ENST00000553920.1
exon_skip_111459	14	23378698:23378804:23380536:23380612:23388207:23388296	23380536:23380612	ENSG00000100461.13	ENST00000399922.2,ENST00000307814.6,ENST00000346528.5,ENST00000556984.1,ENST00000554955.1,ENST00000359890.3,ENST00000556365.1,ENST00000554256.1,ENST00000557667.1,ENST00000556687.1
exon_skip_111461	14	23380536:23380612:23380994:23381112:23388207:23388296	23380994:23381112	ENSG00000100461.13	ENST00000557549.1
exon_skip_111463	14	23380536:23380612:23382932:23383030:23388207:23388296	23382932:23383030	ENSG00000100461.13	ENST00000557464.1
exon_skip_111466	14	23380536:23380612:23382932:23383054:23388207:23388296	23382932:23383054	ENSG00000100461.13	ENST00000555676.1,ENST00000556862.1
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENSG00000100461.13	ENST00000557571.1
exon_skip_111473	14	23382932:23383030:23383123:23383225:23388207:23388296	23383123:23383225	ENSG00000100461.13	ENST00000554618.1

PSI values of skipped exons in TCGA.

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Exon skipping events with PSIs in GTEx for RBM23

Information of exkip skipping event in GTEx

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_111427	14	23370788:23370942:23371022:23371092:23371188:23371308	23371022:23371092	ENSG00000100461.13	ENST00000555209.1,ENST00000359890.3,ENST00000557667.1,ENST00000399922.2,ENST00000346528.5,ENST00000542016.2,ENST00000553884.1,ENST00000556838.1
exon_skip_111430	14	23374302:23374430:23374544:23374662:23375403:23375577	23374544:23374662	ENSG00000100461.13	ENST00000555209.1
exon_skip_111433	14	23374366:23374455:23374544:23374662:23375403:23375577	23374544:23374662	ENSG00000100461.13	ENST00000346528.5,ENST00000557403.1
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENSG00000100461.13	ENST00000359890.3,ENST00000557667.1,ENST00000399922.2,ENST00000542016.2,ENST00000307814.6,ENST00000555722.1,ENST00000555714.1
exon_skip_111439	14	23374814:23374868:23375403:23375577:23377541:23377589	23375403:23375577	ENSG00000100461.13	ENST00000359890.3,ENST00000557667.1,ENST00000307814.6,ENST00000555714.1
exon_skip_111440	14	23375558:23375577:23377541:23377589:23378691:23378804	23377541:23377589	ENSG00000100461.13	ENST00000359890.3,ENST00000557667.1,ENST00000307814.6,ENST00000554256.1,ENST00000554955.1,ENST00000556862.1
exon_skip_111441	14	23375558:23375577:23377541:23377589:23380536:23380612	23377541:23377589	ENSG00000100461.13	ENST00000553920.1,ENST00000555714.1
exon_skip_111443	14	23375558:23375577:23377541:23377608:23378691:23378804	23377541:23377608	ENSG00000100461.13	ENST00000556984.1
exon_skip_111444	14	23375558:23375577:23378691:23378804:23380536:23380612	23378691:23378804	ENSG00000100461.13	ENST00000399922.2,ENST00000346528.5,ENST00000556687.1,ENST00000557549.1,ENST00000555676.1,ENST00000557571.1,ENST00000557464.1
exon_skip_111445	14	23375558:23375577:23378691:23378804:23388207:23388296	23378691:23378804	ENSG00000100461.13	ENST00000557403.1
exon_skip_111447	14	23375558:23375577:23380536:23380612:23388207:23388296	23380536:23380612	ENSG00000100461.13	ENST00000542016.2,ENST00000557227.1,ENST00000553902.1
exon_skip_111456	14	23377541:23377589:23378691:23378804:23380536:23380612	23378691:23378804	ENSG00000100461.13	ENST00000359890.3,ENST00000557667.1,ENST00000307814.6,ENST00000554256.1,ENST00000554955.1,ENST00000556862.1,ENST00000554618.1
exon_skip_111458	14	23377541:23377589:23380536:23380612:23388207:23388296	23380536:23380612	ENSG00000100461.13	ENST00000553920.1,ENST00000555714.1
exon_skip_111459	14	23378698:23378804:23380536:23380612:23388207:23388296	23380536:23380612	ENSG00000100461.13	ENST00000359890.3,ENST00000557667.1,ENST00000399922.2,ENST00000346528.5,ENST00000307814.6,ENST00000554256.1,ENST00000556687.1,ENST00000554955.1,ENST00000556984.1,ENST00000556365.1
exon_skip_111461	14	23380536:23380612:23380994:23381112:23388207:23388296	23380994:23381112	ENSG00000100461.13	ENST00000557549.1
exon_skip_111463	14	23380536:23380612:23382932:23383030:23388207:23388296	23382932:23383030	ENSG00000100461.13	ENST00000557464.1
exon_skip_111466	14	23380536:23380612:23382932:23383054:23388207:23388296	23382932:23383054	ENSG00000100461.13	ENST00000555676.1,ENST00000556862.1
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENSG00000100461.13	ENST00000557571.1
exon_skip_111473	14	23382932:23383030:23383123:23383225:23388207:23388296	23383123:23383225	ENSG00000100461.13	ENST00000554618.1

PSI values of skipped exons in GTEx.

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for RBM23

Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000359890	23380536	23380612	3UTR-3CDS
ENST00000359890	23371022	23371092	Frame-shift
ENST00000359890	23378691	23378804	Frame-shift
ENST00000359890	23374814	23374868	In-frame
ENST00000359890	23375403	23375577	In-frame
ENST00000359890	23377541	23377589	In-frame

Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000359890	23380536	23380612	3UTR-3CDS
ENST00000359890	23371022	23371092	Frame-shift
ENST00000359890	23378691	23378804	Frame-shift
ENST00000359890	23374814	23374868	In-frame
ENST00000359890	23375403	23375577	In-frame
ENST00000359890	23377541	23377589	In-frame

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Infer the effects of exon skipping event on protein functional features for RBM23

Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.

Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000359890	2618	439	23377541	23377589	376	423	60	75
ENST00000359890	2618	439	23375403	23375577	424	597	76	133
ENST00000359890	2618	439	23374814	23374868	598	651	134	151

Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000359890	2618	439	23377541	23377589	376	423	60	75
ENST00000359890	2618	439	23375403	23375577	424	597	76	133
ENST00000359890	2618	439	23374814	23374868	598	651	134	151

Lost protein functional features of individual exon skipping events in TCGA.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
Q86U06	60	75	1	100	Alternative sequence	ID=VSP_008311;Note=In isoform 5. MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHNKSRDRKRSRSRDRDRYRRRNSRSRSPGRQCRH->MSNKGKKLKRIILAIPPAAPATVAMRPVEAAPSGRQARRRGVGAIIKAGIESAVVVEIGIGIDGEIVGAEVQVGSVVT;Ontology_term=ECO:0000303;evidence=ECO:00
Q86U06	60	75	60	76	Alternative sequence	ID=VSP_008312;Note=In isoform 2 and isoform 4. KKKRSRSHNKSRDRKRS->N;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303\|PubMed:14702039,ECO:0000303\|PubMed:15489334,ECO:0000303\|Ref.1;Dbxref=PMID:14702039,PMID:15489334
Q86U06	60	75	1	439	Chain	ID=PRO_0000081783;Note=Probable RNA-binding protein 23
Q86U06	60	75	63	127	Compositional bias	Note=Arg-rich
Q86U06	76	133	1	100	Alternative sequence	ID=VSP_008311;Note=In isoform 5. MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHNKSRDRKRSRSRDRDRYRRRNSRSRSPGRQCRH->MSNKGKKLKRIILAIPPAAPATVAMRPVEAAPSGRQARRRGVGAIIKAGIESAVVVEIGIGIDGEIVGAEVQVGSVVT;Ontology_term=ECO:0000303;evidence=ECO:00
Q86U06	76	133	60	76	Alternative sequence	ID=VSP_008312;Note=In isoform 2 and isoform 4. KKKRSRSHNKSRDRKRS->N;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303\|PubMed:14702039,ECO:0000303\|PubMed:15489334,ECO:0000303\|Ref.1;Dbxref=PMID:14702039,PMID:15489334
Q86U06	76	133	1	439	Chain	ID=PRO_0000081783;Note=Probable RNA-binding protein 23
Q86U06	76	133	63	127	Compositional bias	Note=Arg-rich
Q86U06	76	133	128	128	Modified residue	Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244\|PubMed:23186163;Dbxref=PMID:23186163
Q86U06	76	133	132	132	Sequence conflict	Note=A->T;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q86U06	134	151	135	152	Alternative sequence	ID=VSP_008313;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303\|PubMed:14702039;Dbxref=PMID:14702039
Q86U06	134	151	1	439	Chain	ID=PRO_0000081783;Note=Probable RNA-binding protein 23
Q86U06	134	151	149	149	Modified residue	Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244\|PubMed:17081983,ECO:0000244\|PubMed:21406692,ECO:0000244\|PubMed:23186163;Dbxref=PMID:17081983,PMID:21406692,PMID:23186163

Lost protein functional features of individual exon skipping events in GTEx.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
Q86U06	60	75	1	100	Alternative sequence	ID=VSP_008311;Note=In isoform 5. MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHNKSRDRKRSRSRDRDRYRRRNSRSRSPGRQCRH->MSNKGKKLKRIILAIPPAAPATVAMRPVEAAPSGRQARRRGVGAIIKAGIESAVVVEIGIGIDGEIVGAEVQVGSVVT;Ontology_term=ECO:0000303;evidence=ECO:00
Q86U06	60	75	60	76	Alternative sequence	ID=VSP_008312;Note=In isoform 2 and isoform 4. KKKRSRSHNKSRDRKRS->N;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303\|PubMed:14702039,ECO:0000303\|PubMed:15489334,ECO:0000303\|Ref.1;Dbxref=PMID:14702039,PMID:15489334
Q86U06	60	75	1	439	Chain	ID=PRO_0000081783;Note=Probable RNA-binding protein 23
Q86U06	60	75	63	127	Compositional bias	Note=Arg-rich
Q86U06	76	133	1	100	Alternative sequence	ID=VSP_008311;Note=In isoform 5. MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHNKSRDRKRSRSRDRDRYRRRNSRSRSPGRQCRH->MSNKGKKLKRIILAIPPAAPATVAMRPVEAAPSGRQARRRGVGAIIKAGIESAVVVEIGIGIDGEIVGAEVQVGSVVT;Ontology_term=ECO:0000303;evidence=ECO:00
Q86U06	76	133	60	76	Alternative sequence	ID=VSP_008312;Note=In isoform 2 and isoform 4. KKKRSRSHNKSRDRKRS->N;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303\|PubMed:14702039,ECO:0000303\|PubMed:15489334,ECO:0000303\|Ref.1;Dbxref=PMID:14702039,PMID:15489334
Q86U06	76	133	1	439	Chain	ID=PRO_0000081783;Note=Probable RNA-binding protein 23
Q86U06	76	133	63	127	Compositional bias	Note=Arg-rich
Q86U06	76	133	128	128	Modified residue	Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244\|PubMed:23186163;Dbxref=PMID:23186163
Q86U06	76	133	132	132	Sequence conflict	Note=A->T;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q86U06	134	151	135	152	Alternative sequence	ID=VSP_008313;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303\|PubMed:14702039;Dbxref=PMID:14702039
Q86U06	134	151	1	439	Chain	ID=PRO_0000081783;Note=Probable RNA-binding protein 23
Q86U06	134	151	149	149	Modified residue	Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244\|PubMed:17081983,ECO:0000244\|PubMed:21406692,ECO:0000244\|PubMed:23186163;Dbxref=PMID:17081983,PMID:21406692,PMID:23186163

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SNVs in the skipped exons for RBM23

- Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.

- Differential PSIs between mutated versus non-mutated samples.

RBM23_KIRP_exon_skip_111436_psi_boxplot.png
boxplot

- Non-synonymous mutations located in the skipped exons in TCGA.

Cancer type	Sample	ESID	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
LIHC	TCGA-DD-A3A0-01	exon_skip_111427	23371023	23371092	23371030	23371030	Frame_Shift_Del	G	-	p.Q437fs
STAD	TCGA-BR-4201-01	exon_skip_111427	23371023	23371092	23371030	23371030	Frame_Shift_Del	G	-	p.Q437fs
LIHC	TCGA-DD-A39Y-01	exon_skip_111440 exon_skip_111441	23377542	23377589	23377548	23377548	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A39Y-01	exon_skip_111443	23377542	23377608	23377548	23377548	Frame_Shift_Del	T	-	p.K74fs
LIHC	TCGA-DD-A39Y-01	exon_skip_111440 exon_skip_111441	23377542	23377589	23377561	23377561	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A39Y-01	exon_skip_111443	23377542	23377608	23377561	23377561	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A3A0-01	exon_skip_111440 exon_skip_111441	23377542	23377589	23377561	23377561	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A3A0-01	exon_skip_111443	23377542	23377608	23377561	23377561	Frame_Shift_Del	T	-	p.S70fs
LIHC	TCGA-DD-A3A0-01	exon_skip_111456 exon_skip_111444 exon_skip_111445	23378692	23378804	23378792	23378792	Frame_Shift_Del	T	-	p.R27fs
KIRP	TCGA-A4-7583-01	exon_skip_111436	23374815	23374868	23374814	23374814	Splice_Site	C	G	.
KIRP	TCGA-A4-7583-01	exon_skip_111436	23374815	23374868	23374814	23374814	Splice_Site	C	G	p.R152_splice

- Depth of coverage in the three exons composing exon skipping event

Depth of coverage in three exons	Mutation description
	Sample: TCGA-A4-7583-01
	Cancer type: KIRP
	ESID: exon_skip_111436
	Skipped exon start: 23374815
	Skipped exon end: 23374868
	Mutation start: 23374814
	Mutation end: 23374814
	Mutation type: Splice_Site
	Reference seq: C
	Mutation seq: G
	AAchange: .
	Sample: TCGA-A4-7583-01
	Cancer type: KIRP
	ESID: exon_skip_111436
	Skipped exon start: 23374815
	Skipped exon end: 23374868
	Mutation start: 23374814
	Mutation end: 23374814
	Mutation type: Splice_Site
	Reference seq: C
	Mutation seq: G
	AAchange: p.R152_splice
exon_skip_111436_KIRP_TCGA-A4-7583-01.png

- Non-synonymous mutations located in the skipped exons in CCLE.

Sample	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
TGBC11TKB_STOMACH	23371023	23371092	23371030	23371030	Frame_Shift_Del	G	-	p.Q437fs
HCE4_OESOPHAGUS	23371023	23371092	23371090	23371090	Missense_Mutation	G	C	p.L417V
LS411N_LARGE_INTESTINE	23374545	23374662	23374569	23374569	Missense_Mutation	C	A	p.E183D
HUO3N1_BONE	23374545	23374662	23374631	23374631	Missense_Mutation	G	A	p.R163C
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	23375404	23375577	23375407	23375407	Missense_Mutation	G	T	p.T133N
D502MG_CENTRAL_NERVOUS_SYSTEM	23375404	23375577	23375437	23375437	Missense_Mutation	C	T	p.R123H
HEC6_ENDOMETRIUM	23375404	23375577	23375438	23375438	Missense_Mutation	G	A	p.R123C
IALM_LUNG	23375404	23375577	23375438	23375438	Missense_Mutation	G	A	p.R123C
JHUEM1_ENDOMETRIUM	23375404	23375577	23375447	23375447	Missense_Mutation	G	A	p.R120C
MDAMB175VII_BREAST	23375404	23375577	23375447	23375447	Missense_Mutation	G	A	p.R120C
769P_KIDNEY	23375404	23375577	23375503	23375503	Missense_Mutation	C	T	p.R101H
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	23377542	23377589	23377583	23377583	Missense_Mutation	C	G	p.K62N
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	23377542	23377608	23377583	23377583	Missense_Mutation	C	G	p.K62N
HEC6_ENDOMETRIUM	23374545	23374662	23374580	23374580	Nonsense_Mutation	G	A	p.R180*
42MGBA_CENTRAL_NERVOUS_SYSTEM	23371023	23371092	23371092	23371092	Splice_Site	G	A	p.A416V

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for RBM23

sQTL information located at the skipped exons.

Exon skip ID	Chromosome	Three exons	Skippped exon	ENST	Cancer type	SNP id	Location	DNA change (ref/var)	P-value
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	ACC	rs11157927	chr14:23386280	T/C	2.35e-09
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	DLBC	rs11157927	chr14:23386280	T/C	2.08e-07
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	GBM	rs11157927	chr14:23386280	T/C	7.72e-24
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	GBM	rs11157927	chr14:23386280	T/C	1.10e-05
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	CESC	rs11157927	chr14:23386280	T/C	1.20e-30
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	CESC	rs11157927	chr14:23386280	T/C	3.92e-11
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	COAD	rs11157927	chr14:23386280	T/C	3.04e-49
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	COAD	rs11157927	chr14:23386280	T/C	8.09e-13
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	BLCA	rs11157927	chr14:23386280	T/C	2.12e-54
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	BLCA	rs11157927	chr14:23386280	T/C	8.55e-19
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	ESCA	rs11157927	chr14:23386280	T/C	2.48e-34
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	ESCA	rs11157927	chr14:23386280	T/C	1.23e-12
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	HNSC	rs11157927	chr14:23386280	T/C	1.43e-68
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	HNSC	rs11157927	chr14:23386280	T/C	3.52e-22
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	BRCA	rs11157927	chr14:23386280	T/C	6.19e-163
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	BRCA	rs11157927	chr14:23386280	T/C	1.04e-52
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	BRCA	rs11157927	chr14:23386280	T/C	7.13e-05
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	BRCA	rs11157927	chr14:23386280	T/C	7.72e-04
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	KICH	rs11157927	chr14:23386280	T/C	1.02e-14
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LAML	rs11157927	chr14:23386280	T/C	4.87e-20
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LAML	rs11157927	chr14:23386280	T/C	2.15e-06
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	KIRP	rs11157927	chr14:23386280	T/C	7.46e-24
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	KIRP	rs11157927	chr14:23386280	T/C	1.12e-08
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LGG	rs11157927	chr14:23386280	T/C	5.06e-121
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LGG	rs11157927	chr14:23386280	T/C	1.27e-38
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	KIRC	rs11157927	chr14:23386280	T/C	7.30e-75
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	KIRC	rs11157927	chr14:23386280	T/C	8.50e-27
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LUAD	rs11157927	chr14:23386280	T/C	2.97e-64
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LUAD	rs11157927	chr14:23386280	T/C	2.04e-19
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	MESO	rs11157927	chr14:23386280	T/C	7.14e-12
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LIHC	rs11157927	chr14:23386280	T/C	4.04e-32
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LIHC	rs11157927	chr14:23386280	T/C	9.52e-08
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LUSC	rs11157927	chr14:23386280	T/C	5.54e-73
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	LUSC	rs11157927	chr14:23386280	T/C	1.32e-28
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	OV	rs11157927	chr14:23386280	T/C	3.10e-51
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	OV	rs11157927	chr14:23386280	T/C	1.14e-30
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	READ	rs11157927	chr14:23386280	T/C	3.27e-15
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	PCPG	rs11157927	chr14:23386280	T/C	8.36e-32
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	PCPG	rs11157927	chr14:23386280	T/C	1.13e-13
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	PAAD	rs11157927	chr14:23386280	T/C	3.53e-32
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	PAAD	rs11157927	chr14:23386280	T/C	6.58e-09
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	PRAD	rs11157927	chr14:23386280	T/C	4.46e-86
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	PRAD	rs11157927	chr14:23386280	T/C	2.58e-28
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	SARC	rs11157927	chr14:23386280	T/C	1.48e-35
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	SARC	rs11157927	chr14:23386280	T/C	1.44e-10
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	THYM	rs11157927	chr14:23386280	T/C	9.92e-19
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	THYM	rs11157927	chr14:23386280	T/C	1.97e-08
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	TGCT	rs11157927	chr14:23386280	T/C	8.50e-17
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	TGCT	rs11157927	chr14:23386280	T/C	3.56e-07
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	SKCM	rs11157927	chr14:23386280	T/C	3.94e-16
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	SKCM	rs11157927	chr14:23386280	T/C	5.26e-05
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	STAD	rs11157927	chr14:23386280	T/C	7.70e-61
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	STAD	rs11157927	chr14:23386280	T/C	2.99e-16
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	THCA	rs11157927	chr14:23386280	T/C	1.20e-96
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	THCA	rs11157927	chr14:23386280	T/C	2.41e-31
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	UVM	rs11157927	chr14:23386280	T/C	1.11e-16
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	UVM	rs11157927	chr14:23386280	T/C	1.28e-05
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	UCS	rs11157927	chr14:23386280	T/C	1.12e-05
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	UCEC	rs11157927	chr14:23386280	T/C	1.07e-20
exon_skip_111469	14	23380536:23380612:23386236:23386375:23388207:23388296	23386236:23386375	ENST00000557571.1	UCEC	rs11157927	chr14:23386280	T/C	3.16e-06
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	ACC	rs2295682	chr14:23374862	C/T	5.63e-11
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	DLBC	rs2295682	chr14:23374862	C/T	4.44e-09
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	GBM	rs2295682	chr14:23374862	C/T	9.59e-35
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	GBM	rs2295682	chr14:23374862	C/T	2.26e-07
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	CESC	rs2295682	chr14:23374862	C/T	2.78e-45
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	CESC	rs2295682	chr14:23374862	C/T	1.05e-14
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	COAD	rs2295682	chr14:23374862	C/T	5.59e-73
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	COAD	rs2295682	chr14:23374862	C/T	6.67e-16
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	BLCA	rs2295682	chr14:23374862	C/T	5.34e-66
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	BLCA	rs2295682	chr14:23374862	C/T	1.14e-23
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	ESCA	rs2295682	chr14:23374862	C/T	4.85e-37
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	ESCA	rs2295682	chr14:23374862	C/T	2.74e-16
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	HNSC	rs2295682	chr14:23374862	C/T	8.09e-93
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	HNSC	rs2295682	chr14:23374862	C/T	7.15e-28
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	KICH	rs2295682	chr14:23374862	C/T	9.80e-15
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LAML	rs2295682	chr14:23374862	C/T	6.14e-24
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LAML	rs2295682	chr14:23374862	C/T	1.74e-08
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LAML	rs2295682	chr14:23374862	C/T	1.09e-04
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	KIRP	rs2295682	chr14:23374862	C/T	5.31e-37
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	KIRP	rs2295682	chr14:23374862	C/T	9.80e-13
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LGG	rs2295682	chr14:23374862	C/T	6.09e-151
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LGG	rs2295682	chr14:23374862	C/T	2.02e-45
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	KIRC	rs2295682	chr14:23374862	C/T	1.75e-110
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	KIRC	rs2295682	chr14:23374862	C/T	2.38e-37
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LUAD	rs2295682	chr14:23374862	C/T	4.73e-92
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LUAD	rs2295682	chr14:23374862	C/T	4.19e-26
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	MESO	rs2295682	chr14:23374862	C/T	1.95e-13
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	MESO	rs2295682	chr14:23374862	C/T	3.34e-04
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LIHC	rs2295682	chr14:23374862	C/T	2.67e-37
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LIHC	rs2295682	chr14:23374862	C/T	7.97e-09
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LUSC	rs2295682	chr14:23374862	C/T	4.13e-102
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	LUSC	rs2295682	chr14:23374862	C/T	3.37e-39
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	READ	rs2295682	chr14:23374862	C/T	6.60e-20
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	PCPG	rs2295682	chr14:23374862	C/T	1.27e-46
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	PCPG	rs2295682	chr14:23374862	C/T	2.02e-19
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	PAAD	rs2295682	chr14:23374862	C/T	1.19e-43
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	PAAD	rs2295682	chr14:23374862	C/T	3.46e-11
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	PAAD	rs2295682	chr14:23374862	C/T	4.20e-04
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	PRAD	rs2295682	chr14:23374862	C/T	3.29e-126
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	PRAD	rs2295682	chr14:23374862	C/T	6.10e-39
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	SARC	rs2295682	chr14:23374862	C/T	4.89e-52
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	SARC	rs2295682	chr14:23374862	C/T	3.58e-14
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	THYM	rs2295682	chr14:23374862	C/T	1.31e-22
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	THYM	rs2295682	chr14:23374862	C/T	2.25e-10
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	TGCT	rs2295682	chr14:23374862	C/T	7.99e-21
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	TGCT	rs2295682	chr14:23374862	C/T	4.52e-07
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	SKCM	rs2295682	chr14:23374862	C/T	7.51e-20
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	SKCM	rs2295682	chr14:23374862	C/T	2.68e-06
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	STAD	rs2295682	chr14:23374862	C/T	1.08e-79
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	STAD	rs2295682	chr14:23374862	C/T	1.14e-20
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	THCA	rs2295682	chr14:23374862	C/T	3.77e-142
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	THCA	rs2295682	chr14:23374862	C/T	1.76e-43
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	UVM	rs2295682	chr14:23374862	C/T	1.48e-19
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	UVM	rs2295682	chr14:23374862	C/T	9.35e-06
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	UCS	rs2295682	chr14:23374862	C/T	6.18e-07
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	UCEC	rs2295682	chr14:23374862	C/T	3.01e-29
exon_skip_111436	14	23374631:23374662:23374814:23374868:23375403:23375577	23374814:23374868	ENST00000399922.2,ENST00000307814.6,ENST00000555714.1,ENST00000359890.3,ENST00000555722.1,ENST00000557667.1,ENST00000542016.2	UCEC	rs2295682	chr14:23374862	C/T	3.57e-08

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for RBM23

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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for RBM23

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RelatedDrugs for RBM23

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for RBM23

Diseases associated with this gene.
(DisGeNet 4.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	Gene structures and expression levels
	Exon skipping events with PSIs in TCGA
	Exon skipping events with PSIs in GTEx
	Open reading frame (ORF) annotation in the exon skipping event
	Exon skipping events in the canonical protein sequence
	SNVs in the skipped exons with depth of coverage
	Splicing Quantitative Trait Loci (sQTLs) in the skipped exons
	Splicing Quantitative Trait Methylation (sQTM) in the skipped exon
	Related drugs with this gene
	Related diseases with this gene

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Gene summary for RBM23

Exon skipping events across known transcript of Ensembl for RBM23 from UCSC genome browser

Gene isoform structures and expression levels for RBM23

Exon skipping events with PSIs in TCGA for RBM23

Exon skipping events with PSIs in GTEx for RBM23

Open reading frame (ORF) annotation in the exon skipping event for RBM23

Infer the effects of exon skipping event on protein functional features for RBM23

SNVs in the skipped exons for RBM23

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for RBM23

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for RBM23

Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for RBM23

RelatedDrugs for RBM23

RelatedDiseases for RBM23