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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for NCAPG2

check button Gene summary
Gene informationGene symbol

NCAPG2

Gene ID

54892

Gene namenon-SMC condensin II complex subunit G2
SynonymsCAP-G2|CAPG2|LUZP5|MTB|hCAP-G2
Cytomap

7q36.3

Type of geneprotein-coding
Descriptioncondensin-2 complex subunit G2chromosome-associated protein G2leucine zipper protein 5more than blood homolog
Modification date20180519
UniProtAcc

Q86XI2

ContextPubMed: NCAPG2 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for NCAPG2 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for NCAPG2

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for NCAPG2

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_4808467158424357:158424409:158436980:158437080:158438210:158438311158436980:158437080ENSG00000146918.15ENST00000541468.1,ENST00000409423.1,ENST00000275830.10,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3,ENST00000432615.1
exon_skip_4808517158439151:158439255:158443523:158443664:158444984:158445101158443523:158443664ENSG00000146918.15ENST00000449727.2,ENST00000409423.1,ENST00000409339.3,ENST00000467785.1,ENST00000356309.3,ENST00000432615.1
exon_skip_4808547158439151:158439255:158444984:158445172:158447286:158447386158444984:158445172ENSG00000146918.15ENST00000541468.1,ENST00000275830.10,ENST00000441982.1
exon_skip_4808607158447809:158447950:158448030:158448147:158448951:158449125158448030:158448147ENSG00000146918.15ENST00000541468.1,ENST00000449727.2,ENST00000409423.1,ENST00000275830.10,ENST00000409339.3,ENST00000441982.1,ENST00000356309.3,ENST00000432615.1
exon_skip_4808617158451029:158451100:158454885:158455059:158456875:158456988158454885:158455059ENSG00000146918.15ENST00000541468.1,ENST00000449727.2,ENST00000409423.1,ENST00000275830.10,ENST00000409339.3,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3,ENST00000432615.1
exon_skip_4808637158457219:158457442:158461087:158461184:158464205:158464358158461087:158461184ENSG00000146918.15ENST00000432615.1
exon_skip_4808647158457219:158457442:158464205:158464358:158468168:158468308158464205:158464358ENSG00000146918.15ENST00000449727.2,ENST00000409423.1,ENST00000275830.10,ENST00000409339.3,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3
exon_skip_4808687158464205:158464358:158468168:158468308:158472651:158472777158468168:158468308ENSG00000146918.15ENST00000432615.1
exon_skip_4808697158464205:158464358:158468168:158468348:158472651:158472777158468168:158468348ENSG00000146918.15ENST00000449727.2,ENST00000409423.1,ENST00000275830.10,ENST00000409339.3,ENST00000467785.1,ENST00000441982.1,ENST00000356309.3
exon_skip_4808707158482510:158482645:158483259:158483414:158485533:158485648158483259:158483414ENSG00000146918.15ENST00000449727.2,ENST00000409423.1,ENST00000409339.3,ENST00000467785.1,ENST00000356309.3,ENST00000432615.1
exon_skip_4808757158494512:158494629:158496340:158496393:158497414:158497457158496340:158496393ENSG00000146918.15ENST00000449727.2,ENST00000409423.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for NCAPG2

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_4808467158424357:158424409:158436980:158437080:158438210:158438311158436980:158437080ENSG00000146918.15ENST00000432615.1,ENST00000541468.1,ENST00000356309.3,ENST00000409423.1,ENST00000441982.1,ENST00000275830.10,ENST00000467785.1
exon_skip_4808517158439151:158439255:158443523:158443664:158444984:158445101158443523:158443664ENSG00000146918.15ENST00000432615.1,ENST00000356309.3,ENST00000409423.1,ENST00000467785.1,ENST00000409339.3,ENST00000449727.2
exon_skip_4808547158439151:158439255:158444984:158445172:158447286:158447386158444984:158445172ENSG00000146918.15ENST00000541468.1,ENST00000441982.1,ENST00000275830.10
exon_skip_4808607158447809:158447950:158448030:158448147:158448951:158449125158448030:158448147ENSG00000146918.15ENST00000432615.1,ENST00000541468.1,ENST00000356309.3,ENST00000409423.1,ENST00000441982.1,ENST00000275830.10,ENST00000409339.3,ENST00000449727.2
exon_skip_4808617158451029:158451100:158454885:158455059:158456875:158456988158454885:158455059ENSG00000146918.15ENST00000432615.1,ENST00000541468.1,ENST00000356309.3,ENST00000409423.1,ENST00000441982.1,ENST00000275830.10,ENST00000467785.1,ENST00000409339.3,ENST00000449727.2
exon_skip_4808637158457219:158457442:158461087:158461184:158464205:158464358158461087:158461184ENSG00000146918.15ENST00000432615.1
exon_skip_4808647158457219:158457442:158464205:158464358:158468168:158468308158464205:158464358ENSG00000146918.15ENST00000356309.3,ENST00000409423.1,ENST00000441982.1,ENST00000275830.10,ENST00000467785.1,ENST00000409339.3,ENST00000449727.2
exon_skip_4808687158464205:158464358:158468168:158468308:158472651:158472777158468168:158468308ENSG00000146918.15ENST00000432615.1
exon_skip_4808697158464205:158464358:158468168:158468348:158472651:158472777158468168:158468348ENSG00000146918.15ENST00000356309.3,ENST00000409423.1,ENST00000441982.1,ENST00000275830.10,ENST00000467785.1,ENST00000409339.3,ENST00000449727.2
exon_skip_4808707158482510:158482645:158483259:158483414:158485533:158485648158483259:158483414ENSG00000146918.15ENST00000432615.1,ENST00000356309.3,ENST00000409423.1,ENST00000467785.1,ENST00000409339.3,ENST00000449727.2
exon_skip_4808757158494512:158494629:158496340:158496393:158497414:158497457158496340:158496393ENSG00000146918.15ENST00000409423.1,ENST00000449727.2

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for NCAPG2

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000004094231584963401584963933UTR-3UTR
ENST00000356309158436980158437080Frame-shift
ENST00000409423158436980158437080Frame-shift
ENST00000356309158483259158483414Frame-shift
ENST00000409423158483259158483414Frame-shift
ENST00000356309158443523158443664In-frame
ENST00000409423158443523158443664In-frame
ENST00000356309158448030158448147In-frame
ENST00000409423158448030158448147In-frame
ENST00000356309158454885158455059In-frame
ENST00000409423158454885158455059In-frame
ENST00000356309158464205158464358In-frame
ENST00000409423158464205158464358In-frame
ENST00000356309158468168158468348In-frame
ENST00000409423158468168158468348In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000004094231584963401584963933UTR-3UTR
ENST00000356309158436980158437080Frame-shift
ENST00000409423158436980158437080Frame-shift
ENST00000356309158483259158483414Frame-shift
ENST00000409423158483259158483414Frame-shift
ENST00000356309158443523158443664In-frame
ENST00000409423158443523158443664In-frame
ENST00000356309158448030158448147In-frame
ENST00000409423158448030158448147In-frame
ENST00000356309158454885158455059In-frame
ENST00000409423158454885158455059In-frame
ENST00000356309158464205158464358In-frame
ENST00000409423158464205158464358In-frame
ENST00000356309158468168158468348In-frame
ENST00000409423158468168158468348In-frame

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Infer the effects of exon skipping event on protein functional features for NCAPG2

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003563093947114315846816815846834812921471382442
ENST000004094233974114315846816815846834813201499382442
ENST000003563093947114315846420515846435814721624442493
ENST000004094233974114315846420515846435815001652442493
ENST000003563093947114315845488515845505919612134605663
ENST000004094233974114315845488515845505919892162605663
ENST000003563093947114315844803015844814725342650796835
ENST000004094233974114315844803015844814725622678796835
ENST0000035630939471143158443523158443664308032209781025
ENST0000040942339741143158443523158443664310832489781025

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003563093947114315846816815846834812921471382442
ENST000004094233974114315846816815846834813201499382442
ENST000003563093947114315846420515846435814721624442493
ENST000004094233974114315846420515846435815001652442493
ENST000003563093947114315845488515845505919612134605663
ENST000004094233974114315845488515845505919892162605663
ENST000003563093947114315844803015844814725342650796835
ENST000004094233974114315844803015844814725622678796835
ENST0000035630939471143158443523158443664308032209781025
ENST0000040942339741143158443523158443664310832489781025

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q86XI238244211143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI238244211143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI244249311143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI244249311143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI2442493460498RepeatNote=HEAT
Q86XI2442493460498RepeatNote=HEAT
Q86XI260566311143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI260566311143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI279683511143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI279683511143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI2796835805805Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q86XI2796835805805Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q86XI2978102511143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI2978102511143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q86XI238244211143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI238244211143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI244249311143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI244249311143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI2442493460498RepeatNote=HEAT
Q86XI2442493460498RepeatNote=HEAT
Q86XI260566311143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI260566311143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI279683511143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI279683511143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI2796835805805Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q86XI2796835805805Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:20068231,PMID:23186163
Q86XI2978102511143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2
Q86XI2978102511143ChainID=PRO_0000255942;Note=Condensin-2 complex subunit G2


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SNVs in the skipped exons for NCAPG2

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A3A0-01exon_skip_480851
158443524158443664158443535158443535Frame_Shift_DelG-p.Q1022fs
BLCATCGA-KQ-A41R-01exon_skip_480851
158443524158443664158443566158443581Frame_Shift_DelCAGAGTAGAAAGTACA-p.GVLSTL1006fs
LIHCTCGA-DD-A3A0-01exon_skip_480854
158444985158445172158445038158445038Frame_Shift_DelT-p.M961fs
LIHCTCGA-DD-A39Y-01exon_skip_480854
158444985158445172158445051158445051Frame_Shift_DelT-p.K956fs
STADTCGA-CG-4305-01exon_skip_480854
158444985158445172158445158158445158Frame_Shift_DelA-p.Y921fs
LIHCTCGA-DD-A39Y-01exon_skip_480861
158454886158455059158454895158454895Frame_Shift_DelT-p.K660fs
LIHCTCGA-DD-A3A0-01exon_skip_480861
158454886158455059158454895158454895Frame_Shift_DelT-p.K660fs
BLCATCGA-G2-A2EO-01exon_skip_480846
158436981158437080158437065158437065Nonsense_MutationGCp.S1099*
PRADTCGA-G9-6338-01exon_skip_480851
158443524158443664158443616158443616Nonsense_MutationGAp.Q995*
PRADTCGA-G9-6338-01exon_skip_480851
158443524158443664158443616158443616Nonsense_MutationGAp.Q995X
LUADTCGA-05-4405-01exon_skip_480869
158468169158468348158468339158468339Nonsense_MutationCAp.E386*
ESCATCGA-L5-A4OI-01exon_skip_480870
158483260158483414158483385158483385Nonsense_MutationGAp.R138*
ESCATCGA-L5-A4OI-01exon_skip_480870
158483260158483414158483385158483385Nonsense_MutationGAp.R138X
UCECTCGA-AP-A051-01exon_skip_480869
158468169158468348158468349158468349Splice_SiteCAe11-1

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
HS852T_SKIN158443524158443664158443622158443622Missense_MutationCTp.A993T
TUHR4TKB_KIDNEY158443524158443664158443622158443622Missense_MutationCTp.A993T
JHH7_LIVER158443524158443664158443622158443622Missense_MutationCTp.A993T
LK2_LUNG158443524158443664158443622158443622Missense_MutationCTp.A993T
NBTU110_AUTONOMIC_GANGLIA158443524158443664158443622158443622Missense_MutationCTp.A993T
RKO_LARGE_INTESTINE158443524158443664158443645158443645Missense_MutationCAp.R985M
NCIH1563_LUNG158444985158445172158445128158445128Missense_MutationCGp.E931Q
HCC2998_LARGE_INTESTINE158444985158445172158445143158445143Missense_MutationGTp.L926I
KURAMOCHI_OVARY158464206158464358158464247158464247Missense_MutationCAp.V480L
NCIH2171_LUNG158464206158464358158464347158464347Missense_MutationCTp.M446I
NCIBL2171_MATCHED_NORMAL_TISSUE158464206158464358158464347158464347Missense_MutationCTp.M446I
VMRCRCZ_KIDNEY158468169158468348158468203158468203Missense_MutationGAp.T431M
VMRCRCZ_KIDNEY158468169158468308158468203158468203Missense_MutationGAp.T431M
U698M_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE158468169158468348158468265158468265Missense_MutationCAp.M410I
U698M_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE158468169158468308158468265158468265Missense_MutationCAp.M410I
SAT_UPPER_AERODIGESTIVE_TRACT158468169158468348158468281158468281Missense_MutationGCp.S405C
SAT_UPPER_AERODIGESTIVE_TRACT158468169158468308158468281158468281Missense_MutationGCp.S405C
NCIH1869_LUNG158468169158468348158468311158468311Missense_MutationGAp.T395I
NCIH1869_LUNG158468169158468308158468311158468311Missense_MutationGAp.T395I
MN60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE158483260158483414158483268158483268Missense_MutationTAp.T177S
EW18_BONE158483260158483414158483339158483339Missense_MutationTCp.E153G
A204_SOFT_TISSUE158483260158483414158483384158483384Missense_MutationCTp.R138Q
TTC642_SOFT_TISSUE158483260158483414158483384158483384Missense_MutationCTp.R138Q

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for NCAPG2

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for NCAPG2


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for NCAPG2


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RelatedDrugs for NCAPG2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NCAPG2

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource