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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for DYM

check button Gene summary
Gene informationGene symbol

DYM

Gene ID

54808

Gene namedymeclin
SynonymsDMC|SMC
Cytomap

18q21.1

Type of geneprotein-coding
Descriptiondymeclindyggve-Melchior-Clausen syndrome protein
Modification date20180523
UniProtAcc

Q7RTS9

ContextPubMed: DYM [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for DYM from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for DYM

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for DYM

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_2991681846570189:46570574:46619586:46619681:46623771:4662386346619586:46619681ENSG00000141627.9ENST00000577734.1
exon_skip_2991711846570189:46570574:46623771:46623885:46645113:4664529646623771:46623885ENSG00000141627.9ENST00000269445.6,ENST00000442713.2
exon_skip_2991791846623771:46623885:46645113:46645296:46690054:4669015746645113:46645296ENSG00000141627.9ENST00000269445.6,ENST00000442713.2
exon_skip_2991811846645113:46645296:46690054:46690157:46783379:4678347446690054:46690157ENSG00000141627.9ENST00000269445.6,ENST00000442713.2
exon_skip_2991821846690080:46690157:46735920:46736085:46783379:4678347446735920:46736085ENSG00000141627.9ENST00000582399.1
exon_skip_2991841846798547:46798673:46808366:46808545:46812803:4681298646808366:46808545ENSG00000141627.9ENST00000269445.6,ENST00000442713.2
exon_skip_2991871846808537:46808545:46812803:46812986:46858233:4685837646812803:46812986ENSG00000141627.9ENST00000269445.6,ENST00000584983.1
exon_skip_2991891846812857:46812983:46855942:46856077:46858233:4685837646855942:46856077ENSG00000141627.9ENST00000418472.2
exon_skip_2991921846812866:46812986:46858233:46858376:46860097:4686022346858233:46858376ENSG00000141627.9ENST00000581738.1,ENST00000269445.6,ENST00000584983.1,ENST00000583280.1,ENST00000580615.1
exon_skip_2991981846858233:46858376:46860097:46860223:46889530:4688960346860097:46860223ENSG00000141627.9ENST00000581738.1,ENST00000578396.1,ENST00000269445.6,ENST00000584983.1,ENST00000418472.2,ENST00000583280.1,ENST00000583225.1
exon_skip_2992001846889588:46889603:46902017:46902094:46904936:4690501946902017:46902094ENSG00000141627.9ENST00000578396.1
exon_skip_2992061846905028:46905070:46906034:46906128:46917962:4691801246906034:46906128ENSG00000141627.9ENST00000269445.6,ENST00000579058.1,ENST00000578596.1,ENST00000418472.2,ENST00000583353.1
exon_skip_2992121846906115:46906128:46917754:46917821:46917962:4691801246917754:46917821ENSG00000141627.9ENST00000577481.1
exon_skip_2992151846906115:46906128:46917962:46918015:46956624:4695681746917962:46918015ENSG00000141627.9ENST00000269445.6,ENST00000583353.1
exon_skip_2992221846917989:46918015:46920014:46920112:46944304:4694442746920014:46920112ENSG00000141627.9ENST00000579058.1
exon_skip_2992231846917989:46918015:46920014:46920112:46956624:4695679746920014:46920112ENSG00000141627.9ENST00000581409.1
exon_skip_2992241846917989:46918015:46944304:46944427:46956624:4695679746944304:46944427ENSG00000141627.9ENST00000582095.1
exon_skip_2992261846917989:46918015:46956624:46956817:46986767:4698699746956624:46956817ENSG00000141627.9ENST00000269445.6,ENST00000577481.1,ENST00000584977.1
exon_skip_2992271846920014:46920112:46944304:46944427:46956624:4695679746944304:46944427ENSG00000141627.9ENST00000579058.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for DYM

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_2991681846570189:46570574:46619586:46619681:46623771:4662386346619586:46619681ENSG00000141627.9ENST00000577734.1
exon_skip_2991711846570189:46570574:46623771:46623885:46645113:4664529646623771:46623885ENSG00000141627.9ENST00000442713.2,ENST00000269445.6
exon_skip_2991791846623771:46623885:46645113:46645296:46690054:4669015746645113:46645296ENSG00000141627.9ENST00000442713.2,ENST00000269445.6
exon_skip_2991811846645113:46645296:46690054:46690157:46783379:4678347446690054:46690157ENSG00000141627.9ENST00000442713.2,ENST00000269445.6
exon_skip_2991821846690080:46690157:46735920:46736085:46783379:4678347446735920:46736085ENSG00000141627.9ENST00000582399.1
exon_skip_2991841846798547:46798673:46808366:46808545:46812803:4681298646808366:46808545ENSG00000141627.9ENST00000442713.2,ENST00000269445.6
exon_skip_2991871846808537:46808545:46812803:46812986:46858233:4685837646812803:46812986ENSG00000141627.9ENST00000269445.6,ENST00000584983.1
exon_skip_2991891846812857:46812983:46855942:46856077:46858233:4685837646855942:46856077ENSG00000141627.9ENST00000418472.2
exon_skip_2991921846812866:46812986:46858233:46858376:46860097:4686022346858233:46858376ENSG00000141627.9ENST00000269445.6,ENST00000584983.1,ENST00000580615.1,ENST00000581738.1,ENST00000583280.1
exon_skip_2991981846858233:46858376:46860097:46860223:46889530:4688960346860097:46860223ENSG00000141627.9ENST00000269445.6,ENST00000584983.1,ENST00000418472.2,ENST00000583225.1,ENST00000581738.1,ENST00000583280.1,ENST00000578396.1
exon_skip_2992001846889588:46889603:46902017:46902094:46904936:4690501946902017:46902094ENSG00000141627.9ENST00000578396.1
exon_skip_2992061846905028:46905070:46906034:46906128:46917962:4691801246906034:46906128ENSG00000141627.9ENST00000269445.6,ENST00000418472.2,ENST00000578596.1,ENST00000579058.1,ENST00000583353.1
exon_skip_2992121846906115:46906128:46917754:46917821:46917962:4691801246917754:46917821ENSG00000141627.9ENST00000577481.1
exon_skip_2992151846906115:46906128:46917962:46918015:46956624:4695681746917962:46918015ENSG00000141627.9ENST00000269445.6,ENST00000583353.1
exon_skip_2992221846917989:46918015:46920014:46920112:46944304:4694442746920014:46920112ENSG00000141627.9ENST00000579058.1
exon_skip_2992231846917989:46918015:46920014:46920112:46956624:4695679746920014:46920112ENSG00000141627.9ENST00000581409.1
exon_skip_2992241846917989:46918015:46944304:46944427:46956624:4695679746944304:46944427ENSG00000141627.9ENST00000582095.1
exon_skip_2992261846917989:46918015:46956624:46956817:46986767:4698699746956624:46956817ENSG00000141627.9ENST00000269445.6,ENST00000577481.1,ENST00000584977.1
exon_skip_2992271846920014:46920112:46944304:46944427:46956624:4695679746944304:46944427ENSG00000141627.9ENST00000579058.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for DYM

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000026944546956624469568173UTR-3CDS
ENST000002694454669005446690157Frame-shift
ENST000002694454680836646808545Frame-shift
ENST000002694454685823346858376Frame-shift
ENST000002694454690603446906128Frame-shift
ENST000002694454691796246918015Frame-shift
ENST000002694454662377146623885In-frame
ENST000002694454664511346645296In-frame
ENST000002694454681280346812986In-frame
ENST000002694454686009746860223In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000026944546956624469568173UTR-3CDS
ENST000002694454669005446690157Frame-shift
ENST000002694454680836646808545Frame-shift
ENST000002694454685823346858376Frame-shift
ENST000002694454690603446906128Frame-shift
ENST000002694454691796246918015Frame-shift
ENST000002694454662377146623885In-frame
ENST000002694454664511346645296In-frame
ENST000002694454681280346812986In-frame
ENST000002694454686009746860223In-frame

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Infer the effects of exon skipping event on protein functional features for DYM

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000269445272066946860097468602239531078165206
ENST000002694452720669468128034681298612221404254315
ENST000002694452720669466451134664529620222204521582
ENST000002694452720669466237714662388522052318582620

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000269445272066946860097468602239531078165206
ENST000002694452720669468128034681298612221404254315
ENST000002694452720669466451134664529620222204521582
ENST000002694452720669466237714662388522052318582620

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature


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SNVs in the skipped exons for DYM

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A39Y-01exon_skip_299179
46645114466452964664512446645124Frame_Shift_DelT-p.N579fs
ESCATCGA-L5-A8NM-01exon_skip_299181
46690055466901574669013346690133Frame_Shift_DelT-p.K495fs
SKCMTCGA-OD-A75X-06exon_skip_299192
46858234468583764685834146858341Frame_Shift_DelA-p.L219fs
LIHCTCGA-BC-A112-01exon_skip_299206
46906035469061284690612146906122Frame_Shift_Ins-Tp.K67fs
SKCMTCGA-FR-A726-01exon_skip_299179
46645114466452964664514046645140Nonsense_MutationGAp.Q574*
SARCTCGA-QQ-A8VG-01exon_skip_299179
46645114466452964664515846645158Nonsense_MutationGAp.R568*
SKCMTCGA-BF-AAOU-01exon_skip_299179
46645114466452964664515846645158Nonsense_MutationGAp.R568*
SKCMTCGA-EE-A2GU-06exon_skip_299179
46645114466452964664515846645158Nonsense_MutationGAp.R568*
SKCMTCGA-EE-A2GU-06exon_skip_299179
46645114466452964664515846645158Nonsense_MutationGAp.R568X
SKCMTCGA-WE-A8K5-06exon_skip_299179
46645114466452964664515846645158Nonsense_MutationGAp.R568*
COADTCGA-AZ-4315-01exon_skip_299179
46645114466452964664526346645263Nonsense_MutationGAp.R533X
SKCMTCGA-EE-A2MS-06exon_skip_299179
46645114466452964664526346645263Nonsense_MutationGAp.R533*
UCECTCGA-B5-A0JY-01exon_skip_299179
46645114466452964664526346645263Nonsense_MutationGAp.R533*
UCECTCGA-D1-A17Q-01exon_skip_299179
46645114466452964664526346645263Nonsense_MutationGAp.R533*
UCECTCGA-A5-A0GP-01exon_skip_299206
46906035469061284690606346906063Nonsense_MutationCAp.E87*
UCECTCGA-B5-A0JY-01exon_skip_299206
46906035469061284690606346906063Nonsense_MutationCAp.E87*
HNSCTCGA-CV-6961-01exon_skip_299206
46906035469061284690612646906126Nonsense_MutationCAp.E66*
LUADTCGA-86-8073-01exon_skip_299226
46956625469568174695676146956761Nonsense_MutationCAp.G2*

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE46808367468085454680853946808539Frame_Shift_DelC-p.S318fs
SUPHD1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE46623772466238854662382546623825Missense_MutationCTp.V603I
NCIH1944_LUNG46623772466238854662382746623827Missense_MutationCTp.R602Q
NCIH2122_LUNG46623772466238854662384846623848Missense_MutationCAp.G595V
MDAMB231_BREAST46623772466238854662385246623852Missense_MutationCAp.A594S
SW684_SOFT_TISSUE46645114466452964664519346645193Missense_MutationGAp.A556V
SNU1033_LARGE_INTESTINE46645114466452964664526246645262Missense_MutationCTp.R533Q
CP66MEL_SKIN46690055466901574669006846690068Missense_MutationGAp.P517L
SNU1040_LARGE_INTESTINE46808367468085454680837346808373Missense_MutationTGp.E373D
SCH_STOMACH46808367468085454680837646808376Missense_MutationCTp.M372I
KARPAS1106P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE46808367468085454680838346808383Missense_MutationGTp.T370K
NCIH250_LUNG46808367468085454680845946808459Missense_MutationATp.S345T
EFO27_OVARY46812804468129864681292946812929Missense_MutationGAp.P274L
JHUEM3_ENDOMETRIUM46812804468129864681293046812930Missense_MutationGAp.P274S
KYSE30_OESOPHAGUS46812804468129864681293046812930Missense_MutationGAp.P274S
COLO678_LARGE_INTESTINE46812804468129864681293546812935Missense_MutationGCp.A272G
DMS53_LUNG46812804468129864681293546812935Missense_MutationGCp.A272G
HCT15_LARGE_INTESTINE46812804468129864681293546812935Missense_MutationGCp.A272G
NCIH2023_LUNG46858234468583764685828446858284Missense_MutationTAp.Q238L
HT115_LARGE_INTESTINE46858234468583764685834946858349Missense_MutationCAp.K216N
SNU81_LARGE_INTESTINE46860098468602234686019646860196Missense_MutationTAp.E174D
NCIH748_LUNG46860098468602234686020546860205Missense_MutationTCp.I171M
NCIH446_LUNG46906035469061284690609646906096Missense_MutationCTp.A76T
OVMIU_OVARY46906035469061284690612646906126Missense_MutationCTp.E66K
LOVO_LARGE_INTESTINE46917963469180154691801346918013Missense_MutationCTp.S48N
SKLU1_LUNG46956625469568174695665246956652Missense_MutationGAp.S38L
PLCPRF5_LIVER46956625469568174695668346956683Missense_MutationCGp.E28Q
SNU1040_LARGE_INTESTINE46956625469568174695673746956737Missense_MutationCTp.D10N
CAMA1_BREAST46956625469568174695674546956745Missense_MutationCGp.R7T
SNU81_LARGE_INTESTINE46645114466452964664515846645158Nonsense_MutationGAp.R568*
SISO_CERVIX46860098468602234686010846860108Nonsense_MutationGAp.R204*
HEC1A_ENDOMETRIUM46860098468602234686010846860108Nonsense_MutationGAp.R204*
GRST_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE46860098468602234686010846860108Nonsense_MutationGAp.R204*
IOMMLEE_CENTRAL_NERVOUS_SYSTEM46860098468602234686010846860108Nonsense_MutationGAp.R204*
HEC251_ENDOMETRIUM46906035469061284690606346906063Nonsense_MutationCAp.E87*
HCT15_LARGE_INTESTINE46812804468129864681280446812804Splice_SiteCAp.D316Y

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for DYM

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value
exon_skip_2992231846917989:46918015:46920014:46920112:46956624:4695679746920014:46920112ENST00000581409.1BLCArs12456170chr18:46920025A/C1.30e-05
exon_skip_2992231846917989:46918015:46920014:46920112:46956624:4695679746920014:46920112ENST00000581409.1HNSCrs12456170chr18:46920025A/C5.90e-05
exon_skip_2992231846917989:46918015:46920014:46920112:46956624:4695679746920014:46920112ENST00000581409.1BRCArs12456170chr18:46920025A/C8.52e-05
exon_skip_2992231846917989:46918015:46920014:46920112:46956624:4695679746920014:46920112ENST00000581409.1LUSCrs12456170chr18:46920025A/C1.93e-04
exon_skip_2992231846917989:46918015:46920014:46920112:46956624:4695679746920014:46920112ENST00000581409.1TGCTrs12456170chr18:46920025A/C7.26e-04
exon_skip_2992221846917989:46918015:46920014:46920112:46944304:4694442746920014:46920112ENST00000579058.1BLCArs12456170chr18:46920025A/C1.30e-05
exon_skip_2992221846917989:46918015:46920014:46920112:46944304:4694442746920014:46920112ENST00000579058.1HNSCrs12456170chr18:46920025A/C5.90e-05
exon_skip_2992221846917989:46918015:46920014:46920112:46944304:4694442746920014:46920112ENST00000579058.1BRCArs12456170chr18:46920025A/C8.52e-05
exon_skip_2992221846917989:46918015:46920014:46920112:46944304:4694442746920014:46920112ENST00000579058.1LUSCrs12456170chr18:46920025A/C1.93e-04
exon_skip_2992221846917989:46918015:46920014:46920112:46944304:4694442746920014:46920112ENST00000579058.1TGCTrs12456170chr18:46920025A/C7.26e-04
exon_skip_2992241846917989:46918015:46944304:46944427:46956624:4695679746944304:46944427ENST00000582095.1BLCArs113698074chr18:46944322G/C1.30e-05
exon_skip_2992241846917989:46918015:46944304:46944427:46956624:4695679746944304:46944427ENST00000582095.1HNSCrs113698074chr18:46944322G/C5.90e-05
exon_skip_2992241846917989:46918015:46944304:46944427:46956624:4695679746944304:46944427ENST00000582095.1BRCArs113698074chr18:46944322G/C6.34e-05
exon_skip_2992241846917989:46918015:46944304:46944427:46956624:4695679746944304:46944427ENST00000582095.1LUSCrs113698074chr18:46944322G/C1.93e-04
exon_skip_2992241846917989:46918015:46944304:46944427:46956624:4695679746944304:46944427ENST00000582095.1TGCTrs113698074chr18:46944322G/C7.26e-04
exon_skip_2992271846920014:46920112:46944304:46944427:46956624:4695679746944304:46944427ENST00000579058.1BLCArs113698074chr18:46944322G/C1.30e-05
exon_skip_2992271846920014:46920112:46944304:46944427:46956624:4695679746944304:46944427ENST00000579058.1HNSCrs113698074chr18:46944322G/C5.90e-05
exon_skip_2992271846920014:46920112:46944304:46944427:46956624:4695679746944304:46944427ENST00000579058.1BRCArs113698074chr18:46944322G/C6.34e-05
exon_skip_2992271846920014:46920112:46944304:46944427:46956624:4695679746944304:46944427ENST00000579058.1LUSCrs113698074chr18:46944322G/C1.93e-04
exon_skip_2992271846920014:46920112:46944304:46944427:46956624:4695679746944304:46944427ENST00000579058.1TGCTrs113698074chr18:46944322G/C7.26e-04

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for DYM


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for DYM


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RelatedDrugs for DYM

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for DYM

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
DYMC3888088SMITH-MCCORT DYSPLASIA 13UNIPROT
DYMC0265286Dyggve-Melchior-Clausen syndrome2CTD_human;ORPHANET;UNIPROT
DYMC0036341Schizophrenia1PSYGENET