ExonSkipDB: functional annotation of exon skipping event in human

Gene summary for YIPF1

Gene summary

Gene information	Gene symbol	YIPF1
	Gene ID	54432
	Gene name	Yip1 domain family member 1
	Synonyms	DJ167A19.1\|FinGER1
	Cytomap	1p32.3
	Type of gene	protein-coding
	Description	protein YIPF1YIP1 family member 1
	Modification date	20180523
	UniProtAcc	Q9Y548
	Context	PubMed: YIPF1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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Exon skipping events across known transcript of Ensembl for YIPF1 from UCSC genome browser

Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Gene isoform structures and expression levels for YIPF1

Expression levels of gene isoforms across TCGA.

Expression levels of gene isoforms across GTEx.

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Exon skipping events with PSIs in TCGA for YIPF1

Information of exkip skipping event in TCGA.

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_27265	1	54317406:54317943:54320673:54320724:54325728:54325826	54320673:54320724	ENSG00000058799.9	ENST00000464950.2
exon_skip_27267	1	54317406:54317943:54325728:54325826:54331872:54332055	54325728:54325826	ENSG00000058799.9	ENST00000371399.1,ENST00000072644.1
exon_skip_27269	1	54325728:54325826:54331872:54332055:54332430:54332597	54331872:54332055	ENSG00000058799.9	ENST00000371399.1,ENST00000072644.1,ENST00000464950.2,ENST00000539954.1
exon_skip_27272	1	54331873:54332055:54332430:54332597:54337044:54337161	54332430:54332597	ENSG00000058799.9	ENST00000371399.1,ENST00000469457.1,ENST00000072644.1,ENST00000480151.1,ENST00000464950.2,ENST00000539954.1
exon_skip_27275	1	54332476:54332597:54337044:54337161:54343987:54344075	54337044:54337161	ENSG00000058799.9	ENST00000371399.1,ENST00000469457.1,ENST00000072644.1,ENST00000465897.1,ENST00000480151.1,ENST00000464950.2,ENST00000412288.1,ENST00000539954.1
exon_skip_27277	1	54337044:54337161:54343987:54344075:54344314:54344395	54343987:54344075	ENSG00000058799.9	ENST00000371399.1,ENST00000469457.1,ENST00000072644.1,ENST00000465897.1,ENST00000480151.1,ENST00000464950.2,ENST00000412288.1,ENST00000539954.1
exon_skip_27280	1	54344314:54344395:54348615:54348704:54348785:54348934	54348615:54348704	ENSG00000058799.9	ENST00000472983.1,ENST00000465897.1
exon_skip_27285	1	54344314:54344395:54348785:54348949:54354579:54354659	54348785:54348949	ENSG00000058799.9	ENST00000072644.1,ENST00000464950.2,ENST00000412288.1,ENST00000539954.1
exon_skip_27286	1	54344314:54344395:54348785:54348949:54355385:54355406	54348785:54348949	ENSG00000058799.9	ENST00000371399.1
exon_skip_27294	1	54348785:54348949:54352339:54352394:54355385:54355471	54352339:54352394	ENSG00000058799.9	ENST00000480151.1
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENSG00000058799.9	ENST00000465897.1
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENSG00000058799.9	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1

PSI values of skipped exons in TCGA.

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Exon skipping events with PSIs in GTEx for YIPF1

Information of exkip skipping event in GTEx

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_27265	1	54317406:54317943:54320673:54320724:54325728:54325826	54320673:54320724	ENSG00000058799.9	ENST00000464950.2
exon_skip_27267	1	54317406:54317943:54325728:54325826:54331872:54332055	54325728:54325826	ENSG00000058799.9	ENST00000371399.1,ENST00000072644.1
exon_skip_27269	1	54325728:54325826:54331872:54332055:54332430:54332597	54331872:54332055	ENSG00000058799.9	ENST00000464950.2,ENST00000371399.1,ENST00000072644.1,ENST00000539954.1
exon_skip_27272	1	54331873:54332055:54332430:54332597:54337044:54337161	54332430:54332597	ENSG00000058799.9	ENST00000464950.2,ENST00000371399.1,ENST00000072644.1,ENST00000539954.1,ENST00000469457.1,ENST00000480151.1
exon_skip_27275	1	54332476:54332597:54337044:54337161:54343987:54344075	54337044:54337161	ENSG00000058799.9	ENST00000464950.2,ENST00000371399.1,ENST00000072644.1,ENST00000539954.1,ENST00000469457.1,ENST00000480151.1,ENST00000412288.1,ENST00000465897.1
exon_skip_27277	1	54337044:54337161:54343987:54344075:54344314:54344395	54343987:54344075	ENSG00000058799.9	ENST00000464950.2,ENST00000371399.1,ENST00000072644.1,ENST00000539954.1,ENST00000469457.1,ENST00000480151.1,ENST00000412288.1,ENST00000465897.1
exon_skip_27280	1	54344314:54344395:54348615:54348704:54348785:54348934	54348615:54348704	ENSG00000058799.9	ENST00000465897.1,ENST00000472983.1
exon_skip_27285	1	54344314:54344395:54348785:54348949:54354579:54354659	54348785:54348949	ENSG00000058799.9	ENST00000464950.2,ENST00000072644.1,ENST00000539954.1,ENST00000412288.1
exon_skip_27286	1	54344314:54344395:54348785:54348949:54355385:54355406	54348785:54348949	ENSG00000058799.9	ENST00000371399.1
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENSG00000058799.9	ENST00000465897.1
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENSG00000058799.9	ENST00000072644.1,ENST00000469457.1,ENST00000412288.1,ENST00000472983.1

PSI values of skipped exons in GTEx.

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for YIPF1

Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000072644	54354916	54355136	3UTR-3UTR
ENST00000072644	54325728	54325826	5CDS-5UTR
ENST00000072644	54332430	54332597	Frame-shift
ENST00000072644	54343987	54344075	Frame-shift
ENST00000072644	54348785	54348949	Frame-shift
ENST00000072644	54331872	54332055	In-frame
ENST00000072644	54337044	54337161	In-frame

Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000072644	54354916	54355136	3UTR-3UTR
ENST00000072644	54325728	54325826	5CDS-5UTR
ENST00000072644	54332430	54332597	Frame-shift
ENST00000072644	54343987	54344075	Frame-shift
ENST00000072644	54348785	54348949	Frame-shift
ENST00000072644	54331872	54332055	In-frame
ENST00000072644	54337044	54337161	In-frame

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Infer the effects of exon skipping event on protein functional features for YIPF1

Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.

Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000072644	1820	306	54337044	54337161	702	818	121	160
ENST00000072644	1820	306	54331872	54332055	986	1168	216	277

Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000072644	1820	306	54337044	54337161	702	818	121	160
ENST00000072644	1820	306	54331872	54332055	986	1168	216	277

Lost protein functional features of individual exon skipping events in TCGA.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
Q9Y548	121	160	1	183	Alternative sequence	ID=VSP_019437;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303\|PubMed:14702039;Dbxref=PMID:14702039
Q9Y548	121	160	1	306	Chain	ID=PRO_0000240868;Note=Protein YIPF1
Q9Y548	121	160	141	162	Topological domain	Note=Lumenal;Ontology_term=ECO:0000269;evidence=ECO:0000269\|PubMed:27999994;Dbxref=PMID:27999994
Q9Y548	121	160	120	140	Transmembrane	Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q9Y548	216	277	1	306	Chain	ID=PRO_0000240868;Note=Protein YIPF1
Q9Y548	216	277	222	227	Topological domain	Note=Lumenal;Ontology_term=ECO:0000269;evidence=ECO:0000269\|PubMed:27999994;Dbxref=PMID:27999994
Q9Y548	216	277	249	256	Topological domain	Note=Cytoplasmic;Ontology_term=ECO:0000269;evidence=ECO:0000269\|PubMed:27999994;Dbxref=PMID:27999994
Q9Y548	216	277	201	221	Transmembrane	Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q9Y548	216	277	228	248	Transmembrane	Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q9Y548	216	277	257	277	Transmembrane	Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255

Lost protein functional features of individual exon skipping events in GTEx.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
Q9Y548	121	160	1	183	Alternative sequence	ID=VSP_019437;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303\|PubMed:14702039;Dbxref=PMID:14702039
Q9Y548	121	160	1	306	Chain	ID=PRO_0000240868;Note=Protein YIPF1
Q9Y548	121	160	141	162	Topological domain	Note=Lumenal;Ontology_term=ECO:0000269;evidence=ECO:0000269\|PubMed:27999994;Dbxref=PMID:27999994
Q9Y548	121	160	120	140	Transmembrane	Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q9Y548	216	277	1	306	Chain	ID=PRO_0000240868;Note=Protein YIPF1
Q9Y548	216	277	222	227	Topological domain	Note=Lumenal;Ontology_term=ECO:0000269;evidence=ECO:0000269\|PubMed:27999994;Dbxref=PMID:27999994
Q9Y548	216	277	249	256	Topological domain	Note=Cytoplasmic;Ontology_term=ECO:0000269;evidence=ECO:0000269\|PubMed:27999994;Dbxref=PMID:27999994
Q9Y548	216	277	201	221	Transmembrane	Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q9Y548	216	277	228	248	Transmembrane	Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q9Y548	216	277	257	277	Transmembrane	Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255

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SNVs in the skipped exons for YIPF1

- Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.

- Differential PSIs between mutated versus non-mutated samples.

- Non-synonymous mutations located in the skipped exons in TCGA.

Cancer type	Sample	ESID	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
LIHC	TCGA-DD-A39Y-01	exon_skip_27267	54325729	54325826	54325815	54325815	Frame_Shift_Del	A	-	p.F281fs
LIHC	TCGA-DD-A3A0-01	exon_skip_27267	54325729	54325826	54325815	54325815	Frame_Shift_Del	A	-	p.F281fs
LIHC	TCGA-DD-A39Y-01	exon_skip_27277	54343988	54344075	54344029	54344029	Frame_Shift_Del	T	-	p.N108fs
COAD	TCGA-AA-3543-01	exon_skip_27269	54331873	54332055	54331941	54331941	Nonsense_Mutation	G	A	p.R255X
COAD	TCGA-AZ-4315-01	exon_skip_27275	54337045	54337161	54337057	54337057	Nonsense_Mutation	C	A	p.E157X
LGG	TCGA-DU-6392-01	exon_skip_27286 exon_skip_27285	54348786	54348949	54348857	54348857	Nonsense_Mutation	C	A	p.G42*
BLCA	TCGA-DK-A3X1-01	exon_skip_27286 exon_skip_27285	54348786	54348949	54348950	54348950	Splice_Site	C	T	p.E11_splice

- Depth of coverage in the three exons composing exon skipping event

Depth of coverage in three exons

Mutation description

- Non-synonymous mutations located in the skipped exons in CCLE.

Sample	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
NCIH716_LARGE_INTESTINE	54325729	54325826	54325808	54325808	Missense_Mutation	G	A	p.P284S
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	54331873	54332055	54331940	54331940	Missense_Mutation	C	T	p.R255Q
U698M_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	54331873	54332055	54331961	54331961	Missense_Mutation	G	T	p.P248Q
LB2518EBV_MATCHED_NORMAL_TISSUE	54331873	54332055	54331976	54331976	Missense_Mutation	G	A	p.A243V
HEC251_ENDOMETRIUM	54332431	54332597	54332479	54332479	Missense_Mutation	C	A	p.E200D
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	54332431	54332597	54332493	54332493	Missense_Mutation	A	G	p.Y196H
OSC20_UPPER_AERODIGESTIVE_TRACT	54332431	54332597	54332570	54332570	Missense_Mutation	G	A	p.A170V
HEC251_ENDOMETRIUM	54337045	54337161	54337050	54337050	Missense_Mutation	C	T	p.R159Q
NCIH841_LUNG	54337045	54337161	54337086	54337086	Missense_Mutation	A	T	p.L147Q
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	54337045	54337161	54337087	54337087	Missense_Mutation	G	C	p.L147V
EKVX_LUNG	54348786	54348949	54348874	54348874	Missense_Mutation	G	A	p.T36I
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	54354580	54354659	54354594	54354594	Missense_Mutation	T	C	p.D6G

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for YIPF1

sQTL information located at the skipped exons.

Exon skip ID	Chromosome	Three exons	Skippped exon	ENST	Cancer type	SNP id	Location	DNA change (ref/var)	P-value
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	CESC	rs2294508	chr1:54354658	T/G	6.33e-04
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	COAD	rs2294508	chr1:54354658	T/G	1.36e-06
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	BLCA	rs2294508	chr1:54354658	T/G	4.74e-06
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	BLCA	rs2294508	chr1:54354658	T/G	1.52e-03
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	ESCA	rs2294508	chr1:54354658	T/G	2.04e-05
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	HNSC	rs2294508	chr1:54354658	T/G	1.05e-06
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	BRCA	rs2294508	chr1:54354658	T/G	7.66e-12
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	BRCA	rs2294508	chr1:54354658	T/G	4.02e-08
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	BRCA	rs2294508	chr1:54354658	T/G	1.08e-03
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	BRCA	rs2294508	chr1:54354658	T/G	1.33e-03
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	KIRC	rs2294508	chr1:54354658	T/G	4.54e-07
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	KIRC	rs2294508	chr1:54354658	T/G	9.17e-06
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	KIRC	rs2294508	chr1:54354658	T/G	2.01e-03
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	LUAD	rs2294508	chr1:54354658	T/G	7.31e-04
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	LUAD	rs2294508	chr1:54354658	T/G	1.12e-03
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	LIHC	rs2294508	chr1:54354658	T/G	8.03e-04
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	LUSC	rs2294508	chr1:54354658	T/G	1.45e-05
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	LUSC	rs2294508	chr1:54354658	T/G	2.30e-05
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	LUSC	rs2294508	chr1:54354658	T/G	1.13e-04
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	OV	rs2294508	chr1:54354658	T/G	2.96e-05
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	OV	rs2294508	chr1:54354658	T/G	2.38e-04
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	PRAD	rs2294508	chr1:54354658	T/G	1.43e-06
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	PRAD	rs2294508	chr1:54354658	T/G	7.67e-05
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	STAD	rs2294508	chr1:54354658	T/G	6.28e-11
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	STAD	rs2294508	chr1:54354658	T/G	3.71e-04
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	THCA	rs2294508	chr1:54354658	T/G	1.89e-05
exon_skip_27296	1	54348785:54348949:54354579:54354659:54355385:54355406	54354579:54354659	ENST00000465897.1	THCA	rs2294508	chr1:54354658	T/G	2.83e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	CESC	rs3817871	chr1:54354935	G/C	6.33e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	CESC	rs10888814	chr1:54355041	A/G	6.33e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	COAD	rs3817871	chr1:54354935	G/C	1.36e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	COAD	rs10888814	chr1:54355041	A/G	1.36e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BLCA	rs3817871	chr1:54354935	G/C	4.74e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BLCA	rs10888814	chr1:54355041	A/G	4.74e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BLCA	rs3817871	chr1:54354935	G/C	1.52e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BLCA	rs10888814	chr1:54355041	A/G	1.52e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	ESCA	rs3817871	chr1:54354935	G/C	2.04e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	ESCA	rs10888814	chr1:54355041	A/G	2.04e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	HNSC	rs3817871	chr1:54354935	G/C	1.05e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	HNSC	rs10888814	chr1:54355041	A/G	1.05e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BRCA	rs3817871	chr1:54354935	G/C	7.24e-12
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BRCA	rs10888814	chr1:54355041	A/G	7.24e-12
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BRCA	rs3817871	chr1:54354935	G/C	4.49e-08
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BRCA	rs10888814	chr1:54355041	A/G	4.49e-08
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BRCA	rs3817871	chr1:54354935	G/C	1.12e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BRCA	rs10888814	chr1:54355041	A/G	1.12e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BRCA	rs3817871	chr1:54354935	G/C	1.38e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	BRCA	rs10888814	chr1:54355041	A/G	1.38e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	KIRC	rs3817871	chr1:54354935	G/C	4.54e-07
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	KIRC	rs10888814	chr1:54355041	A/G	4.54e-07
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	KIRC	rs3817871	chr1:54354935	G/C	9.17e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	KIRC	rs10888814	chr1:54355041	A/G	9.17e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	KIRC	rs3817871	chr1:54354935	G/C	2.01e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	KIRC	rs10888814	chr1:54355041	A/G	2.01e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUAD	rs3817871	chr1:54354935	G/C	7.31e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUAD	rs10888814	chr1:54355041	A/G	7.44e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUAD	rs3817871	chr1:54354935	G/C	1.12e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUAD	rs10888814	chr1:54355041	A/G	1.17e-03
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LIHC	rs3817871	chr1:54354935	G/C	8.03e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LIHC	rs10888814	chr1:54355041	A/G	8.03e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUSC	rs3817871	chr1:54354935	G/C	1.45e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUSC	rs10888814	chr1:54355041	A/G	1.45e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUSC	rs3817871	chr1:54354935	G/C	2.30e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUSC	rs10888814	chr1:54355041	A/G	2.30e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUSC	rs3817871	chr1:54354935	G/C	1.13e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	LUSC	rs10888814	chr1:54355041	A/G	1.13e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	OV	rs10888814	chr1:54355041	A/G	7.54e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	OV	rs3817871	chr1:54354935	G/C	2.96e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	OV	rs10888814	chr1:54355041	A/G	8.41e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	OV	rs3817871	chr1:54354935	G/C	2.38e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	PRAD	rs10888814	chr1:54355041	A/G	7.38e-07
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	PRAD	rs3817871	chr1:54354935	G/C	1.43e-06
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	PRAD	rs10749693	chr1:54355105	A/G	1.01e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	PRAD	rs3817871	chr1:54354935	G/C	7.67e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	PRAD	rs10888814	chr1:54355041	A/G	1.13e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	STAD	rs3817871	chr1:54354935	G/C	6.28e-11
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	STAD	rs10888814	chr1:54355041	A/G	7.49e-11
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	STAD	rs10888814	chr1:54355041	A/G	3.56e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	STAD	rs3817871	chr1:54354935	G/C	3.71e-04
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	THCA	rs3817871	chr1:54354935	G/C	1.89e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	THCA	rs10888814	chr1:54355041	A/G	1.89e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	THCA	rs3817871	chr1:54354935	G/C	2.83e-05
exon_skip_27298	1	54354579:54354659:54354916:54355136:54355385:54355406	54354916:54355136	ENST00000472983.1,ENST00000469457.1,ENST00000072644.1,ENST00000412288.1	THCA	rs10888814	chr1:54355041	A/G	2.83e-05

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for YIPF1

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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for YIPF1

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RelatedDrugs for YIPF1

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for YIPF1

Diseases associated with this gene.
(DisGeNet 4.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	Gene structures and expression levels
	Exon skipping events with PSIs in TCGA
	Exon skipping events with PSIs in GTEx
	Open reading frame (ORF) annotation in the exon skipping event
	Exon skipping events in the canonical protein sequence
	SNVs in the skipped exons with depth of coverage
	Splicing Quantitative Trait Loci (sQTLs) in the skipped exons
	Splicing Quantitative Trait Methylation (sQTM) in the skipped exon
	Related drugs with this gene
	Related diseases with this gene

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Gene summary for YIPF1

Exon skipping events across known transcript of Ensembl for YIPF1 from UCSC genome browser

Gene isoform structures and expression levels for YIPF1

Exon skipping events with PSIs in TCGA for YIPF1

Exon skipping events with PSIs in GTEx for YIPF1

Open reading frame (ORF) annotation in the exon skipping event for YIPF1

Infer the effects of exon skipping event on protein functional features for YIPF1

SNVs in the skipped exons for YIPF1

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for YIPF1

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for YIPF1

Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for YIPF1

RelatedDrugs for YIPF1

RelatedDiseases for YIPF1