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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for MLXIPL

check button Gene summary
Gene informationGene symbol

MLXIPL

Gene ID

51085

Gene nameMLX interacting protein like
SynonymsCHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14
Cytomap

7q11.23

Type of geneprotein-coding
Descriptioncarbohydrate-responsive element-binding proteinMlx interactorWS basic-helix-loop-helix leucine zipper proteinWilliams Beuren syndrome chromosome region 14Williams-Beuren syndrome chromosome region 14 protein 1Williams-Beuren syndrome chromosome regio
Modification date20180523
UniProtAcc

Q9NP71

ContextPubMed: MLXIPL [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for MLXIPL from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for MLXIPL

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for MLXIPL

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_476229773009995:73010090:73010171:73010242:73010482:7301059673010171:73010242ENSG00000009950.11ENST00000429400.2,ENST00000354613.1
exon_skip_476231773009995:73010090:73010171:73010299:73010482:7301059673010171:73010299ENSG00000009950.11ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000345114.5,ENST00000313375.3
exon_skip_476236773010693:73010809:73010968:73011116:73011194:7301126273010968:73011116ENSG00000009950.11ENST00000434326.1
exon_skip_476237773010693:73010809:73010968:73011119:73011194:7301126273010968:73011119ENSG00000009950.11ENST00000429400.2,ENST00000414749.2,ENST00000395189.1,ENST00000354613.1,ENST00000313375.3
exon_skip_476238773011194:73011262:73011511:73012043:73013855:7301399673011511:73012043ENSG00000009950.11ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3
exon_skip_476241773011974:73012043:73013855:73014025:73020017:7302009873013855:73014025ENSG00000009950.11ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000476404.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3
exon_skip_476253773020017:73020098:73020239:73020441:73021303:7302134873020239:73020441ENSG00000009950.11ENST00000488212.1,ENST00000429400.2,ENST00000414749.2,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3
exon_skip_476261773020239:73020441:73021303:73021348:73021465:7302175073021303:73021348ENSG00000009950.11ENST00000456640.1
exon_skip_476262773020239:73020441:73021303:73021348:73021660:7302175073021303:73021348ENSG00000009950.11ENST00000429400.2,ENST00000414749.2,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3
exon_skip_476267773021303:73021348:73021465:73021750:73021919:7302200273021465:73021750ENSG00000009950.11ENST00000456640.1
exon_skip_476268773021303:73021348:73021660:73021750:73021919:7302200273021660:73021750ENSG00000009950.11ENST00000429400.2,ENST00000414749.2,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3
exon_skip_476269773021708:73021750:73021919:73022002:73030400:7303049173021919:73022002ENSG00000009950.11ENST00000429400.2,ENST00000414749.2,ENST00000434326.1,ENST00000395189.1,ENST00000345114.5,ENST00000354613.1,ENST00000313375.3,ENST00000456640.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for MLXIPL

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_476229773009995:73010090:73010171:73010242:73010482:7301059673010171:73010242ENSG00000009950.11ENST00000429400.2,ENST00000354613.1
exon_skip_476231773009995:73010090:73010171:73010299:73010482:7301059673010171:73010299ENSG00000009950.11ENST00000414749.2,ENST00000345114.5,ENST00000313375.3,ENST00000395189.1,ENST00000434326.1
exon_skip_476236773010693:73010809:73010968:73011116:73011194:7301126273010968:73011116ENSG00000009950.11ENST00000434326.1
exon_skip_476237773010693:73010809:73010968:73011119:73011194:7301126273010968:73011119ENSG00000009950.11ENST00000414749.2,ENST00000429400.2,ENST00000313375.3,ENST00000354613.1,ENST00000395189.1
exon_skip_476238773011194:73011262:73011511:73012043:73013855:7301399673011511:73012043ENSG00000009950.11ENST00000414749.2,ENST00000429400.2,ENST00000345114.5,ENST00000313375.3,ENST00000354613.1,ENST00000395189.1,ENST00000434326.1,ENST00000476404.1
exon_skip_476241773011974:73012043:73013855:73014025:73020017:7302009873013855:73014025ENSG00000009950.11ENST00000414749.2,ENST00000429400.2,ENST00000345114.5,ENST00000313375.3,ENST00000354613.1,ENST00000395189.1,ENST00000434326.1,ENST00000476404.1
exon_skip_476253773020017:73020098:73020239:73020441:73021303:7302134873020239:73020441ENSG00000009950.11ENST00000414749.2,ENST00000429400.2,ENST00000345114.5,ENST00000313375.3,ENST00000354613.1,ENST00000488212.1
exon_skip_476261773020239:73020441:73021303:73021348:73021465:7302175073021303:73021348ENSG00000009950.11ENST00000456640.1
exon_skip_476262773020239:73020441:73021303:73021348:73021660:7302175073021303:73021348ENSG00000009950.11ENST00000414749.2,ENST00000429400.2,ENST00000345114.5,ENST00000313375.3,ENST00000354613.1
exon_skip_476267773021303:73021348:73021465:73021750:73021919:7302200273021465:73021750ENSG00000009950.11ENST00000456640.1
exon_skip_476268773021303:73021348:73021660:73021750:73021919:7302200273021660:73021750ENSG00000009950.11ENST00000414749.2,ENST00000429400.2,ENST00000345114.5,ENST00000313375.3,ENST00000354613.1
exon_skip_476269773021708:73021750:73021919:73022002:73030400:7303049173021919:73022002ENSG00000009950.11ENST00000414749.2,ENST00000429400.2,ENST00000345114.5,ENST00000313375.3,ENST00000354613.1,ENST00000395189.1,ENST00000434326.1,ENST00000456640.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for MLXIPL

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003133757301017173010299Frame-shift
ENST000003133757301096873011119Frame-shift
ENST000003133757301151173012043Frame-shift
ENST000003133757301385573014025Frame-shift
ENST000003133757302023973020441Frame-shift
ENST000003133757302191973022002Frame-shift
ENST000003133757302130373021348In-frame
ENST000003133757302166073021750In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003133757301017173010299Frame-shift
ENST000003133757301096873011119Frame-shift
ENST000003133757301151173012043Frame-shift
ENST000003133757301385573014025Frame-shift
ENST000003133757302023973020441Frame-shift
ENST000003133757302191973022002Frame-shift
ENST000003133757302130373021348In-frame
ENST000003133757302166073021750In-frame

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Infer the effects of exon skipping event on protein functional features for MLXIPL

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000031337532958527302166073021750532621161191
ENST0000031337532958527302130373021348622666191206

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000031337532958527302166073021750532621161191
ENST0000031337532958527302130373021348622666191206

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature


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SNVs in the skipped exons for MLXIPL

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
MLXIPL_ESCA_exon_skip_476238_psi_boxplot.png
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MLXIPL_KIRC_exon_skip_476238_psi_boxplot.png
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MLXIPL_LIHC_exon_skip_476238_psi_boxplot.png
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MLXIPL_STAD_exon_skip_476238_psi_boxplot.png
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check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
STADTCGA-BR-A453-01exon_skip_476238
73011512730120437301162773011627Frame_Shift_DelG-p.P496fs
KIRCTCGA-BP-5168-01exon_skip_476238
73011512730120437301170873011708Frame_Shift_DelG-p.P469fs
LUADTCGA-53-A4EZ-01exon_skip_476238
73011512730120437301188073011880Frame_Shift_DelG-p.P414fs
STADTCGA-BR-8382-01exon_skip_476238
73011512730120437301191373011913Frame_Shift_DelG-p.P401fs
BLCATCGA-ZF-AA4R-01exon_skip_476238
73011512730120437301201673012016Frame_Shift_DelC-p.D367fs
LIHCTCGA-DD-A1EG-01exon_skip_476238
73011512730120437301202073012020Frame_Shift_DelG-p.P365fs
THCATCGA-FK-A4UB-01exon_skip_476253
73020240730204417302036673020366Frame_Shift_DelC-p.D232fs
ESCATCGA-S8-A6BW-01exon_skip_476238
73011512730120437301156073011561Frame_Shift_Ins-Gp.H519fs
LUSCTCGA-22-5492-01exon_skip_476262
exon_skip_476261
73021304730213487302134273021342Nonsense_MutationTAp.K194*

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
MLXIPL_73011194_73011262_73011511_73012043_73013855_73013996_TCGA-BP-5168-01Sample: TCGA-BP-5168-01
Cancer type: KIRC
ESID: exon_skip_476238
Skipped exon start: 73011512
Skipped exon end: 73012043
Mutation start: 73011708
Mutation end: 73011708
Mutation type: Frame_Shift_Del
Reference seq: G
Mutation seq: -
AAchange: p.P469fs
exon_skip_476238_KIRC_TCGA-BP-5168-01.png
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MLXIPL_73011194_73011262_73011511_73012043_73013855_73013996_TCGA-DD-A1EG-01Sample: TCGA-DD-A1EG-01
Cancer type: LIHC
ESID: exon_skip_476238
Skipped exon start: 73011512
Skipped exon end: 73012043
Mutation start: 73012020
Mutation end: 73012020
Mutation type: Frame_Shift_Del
Reference seq: G
Mutation seq: -
AAchange: p.P365fs
exon_skip_103075_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_100809_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_101656_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_110000_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_11218_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_11263_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_115462_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_138255_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_138373_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_138947_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_302181_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_305812_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_305815_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_309505_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_309539_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_311823_LIHC_TCGA-DD-A1EG-01.png
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exon_skip_311841_LIHC_TCGA-DD-A1EG-01.png
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check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
IGROV1_OVARY73021920730220027302195873021958Frame_Shift_DelG-p.L149fs
TC106_BONE73011512730120437301171373011714Frame_Shift_Ins-Gp.T468fs
MFE319_ENDOMETRIUM73010172730102427301020673010206Missense_MutationGAp.R718W
MFE319_ENDOMETRIUM73010172730102997301020673010206Missense_MutationGAp.R718W
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE73010172730102427301023873010238Missense_MutationCTp.R707H
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE73010172730102997301023873010238Missense_MutationCTp.R707H
HEC59_ENDOMETRIUM73010172730102997301025473010254Missense_MutationTAp.M702L
RT4_URINARY_TRACT73010172730102997301028373010283Missense_MutationGAp.T692M
SW684_SOFT_TISSUE73010172730102997301029073010290Missense_MutationCTp.A690T
HARA_LUNG73010969730111197301097773010977Missense_MutationGCp.A605G
HARA_LUNG73010969730111167301097773010977Missense_MutationGCp.A605G
A549_LUNG73010969730111197301099973010999Missense_MutationCAp.A598S
A549_LUNG73010969730111167301099973010999Missense_MutationCAp.A598S
NCIH650_LUNG73010969730111197301109573011095Missense_MutationATp.C566S
NCIH650_LUNG73010969730111167301109573011095Missense_MutationATp.C566S
NCIH1105_LUNG73011512730120437301156273011562Missense_MutationGTp.P518H
NCIH1573_LUNG73011512730120437301164373011643Missense_MutationGAp.P491L
SF268_CENTRAL_NERVOUS_SYSTEM73011512730120437301171373011713Missense_MutationTGp.T468P
SKES1_BONE73011512730120437301171373011713Missense_MutationTGp.T468P
SKMEL2_SKIN73011512730120437301171373011713Missense_MutationTGp.T468P
SKUT1_SOFT_TISSUE73011512730120437301174073011740Missense_MutationGTp.P459T
RT112_URINARY_TRACT73011512730120437301180973011809Missense_MutationGCp.P436A
LNCAPCLONEFGC_PROSTATE73011512730120437301183773011837Missense_MutationCAp.Q426H
GI1_CENTRAL_NERVOUS_SYSTEM73011512730120437301188073011880Missense_MutationGAp.P412L
SARC9371_BONE73011512730120437301188373011883Missense_MutationGAp.P411L
KYSE450_OESOPHAGUS73011512730120437301196273011962Missense_MutationGAp.R385W
SARC9371_BONE73011512730120437301198673011986Missense_MutationGAp.L377F
MFE319_ENDOMETRIUM73011512730120437301201973012019Missense_MutationACp.L366V
CW2_LARGE_INTESTINE73011512730120437301203373012033Missense_MutationCTp.S361N
HCC56_LARGE_INTESTINE73013856730140257301388873013888Missense_MutationTCp.M347V
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE73013856730140257301388873013888Missense_MutationTCp.M347V
RERFLCSQ1_LUNG73013856730140257301388873013888Missense_MutationTCp.M347V
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE73013856730140257301389073013890Missense_MutationGAp.A346V
AM38_CENTRAL_NERVOUS_SYSTEM73013856730140257301401173014011Missense_MutationACp.S306A
SNUC5_LARGE_INTESTINE73021304730213487302131773021317Missense_MutationAGp.L202P
HEC251_ENDOMETRIUM73021661730217507302171173021711Missense_MutationCTp.E175K
HEC251_ENDOMETRIUM73021466730217507302171173021711Missense_MutationCTp.E175K
TOV21G_OVARY73021661730217507302171173021711Missense_MutationCTp.E175K
TOV21G_OVARY73021466730217507302171173021711Missense_MutationCTp.E175K
RL952_ENDOMETRIUM73021920730220027302196373021963Missense_MutationGAp.T147I
MM127_SKIN73010969730111197301096973010969Splice_SiteCTp.G608S
MM127_SKIN73010969730111167301096973010969Splice_SiteCTp.G608S
HT1080_SOFT_TISSUE73010969730111197301097073010970Splice_SiteGAp.S607S
HT1080_SOFT_TISSUE73010969730111167301097073010970Splice_SiteGAp.S607S
NCIH1838_LUNG73010969730111197301097073010970Splice_SiteGAp.S607S
NCIH1838_LUNG73010969730111167301097073010970Splice_SiteGAp.S607S

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for MLXIPL

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MLXIPL


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MLXIPL


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RelatedDrugs for MLXIPL

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MLXIPL

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
MLXIPLC0022661Kidney Failure, Chronic1CTD_human
MLXIPLC2239176Liver carcinoma1CTD_human