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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for NUMA1

check button Gene summary
Gene informationGene symbol

NUMA1

Gene ID

4926

Gene namenuclear mitotic apparatus protein 1
SynonymsNMP-22|NUMA
Cytomap

11q13.4

Type of geneprotein-coding
Descriptionnuclear mitotic apparatus protein 1SP-H antigencentrophilin stabilizes mitotic spindle in mitotic cellsnuclear matrix protein-22structural nuclear protein
Modification date20180523
UniProtAcc

Q14980

ContextPubMed: NUMA1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
NUMA1

GO:0000132

establishment of mitotic spindle orientation

21816348

NUMA1

GO:0030953

astral microtubule organization

12445386

NUMA1

GO:0060236

regulation of mitotic spindle organization

26195665

NUMA1

GO:1902365

positive regulation of protein localization to spindle pole body

16076287


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Exon skipping events across known transcript of Ensembl for NUMA1 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for NUMA1

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for NUMA1

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_752131171718399:71718481:71719137:71719191:71719733:7171989171719137:71719191ENSG00000137497.13ENST00000541584.1
exon_skip_752201171720313:71720433:71721831:71721900:71723940:7172397271721831:71721900ENSG00000137497.13ENST00000545721.1,ENST00000358965.6,ENST00000541584.1
exon_skip_752231171721852:71721900:71723446:71723488:71723940:7172397271723446:71723488ENSG00000137497.13ENST00000393695.3
exon_skip_752261171721852:71721900:71723940:71727306:71727453:7172757671723940:71727306ENSG00000137497.13ENST00000358965.6
exon_skip_752281171721852:71721900:71727453:71727576:71728732:7172887371727453:71727576ENSG00000137497.13ENST00000351960.6
exon_skip_752291171723446:71723488:71723940:71727306:71727453:7172757671723940:71727306ENSG00000137497.13ENST00000393695.3
exon_skip_752321171730646:71730663:71732249:71732337:71733384:7173346571732249:71732337ENSG00000137497.13ENST00000393695.3,ENST00000537930.1,ENST00000534987.1,ENST00000540843.1,ENST00000351960.6,ENST00000358965.6,ENST00000543009.1,ENST00000543937.1,ENST00000537217.1,ENST00000544238.1,ENST00000544129.1,ENST00000536119.1,ENST00000542977.1
exon_skip_752341171732271:71732337:71733384:71733465:71734110:7173419371733384:71733465ENSG00000137497.13ENST00000393695.3,ENST00000537930.1,ENST00000534987.1,ENST00000540843.1,ENST00000351960.6,ENST00000358965.6,ENST00000543009.1,ENST00000535947.1,ENST00000543937.1,ENST00000537217.1,ENST00000544238.1,ENST00000544129.1,ENST00000536119.1,ENST00000542977.1
exon_skip_752371171734183:71734193:71735319:71735399:71740250:7174033671735319:71735399ENSG00000137497.13ENST00000541641.1,ENST00000393695.3,ENST00000537930.1,ENST00000368959.5,ENST00000534987.1,ENST00000540843.1,ENST00000541719.1,ENST00000351960.6,ENST00000358965.6,ENST00000543009.1,ENST00000535947.1,ENST00000543937.1,ENST00000537217.1,ENST00000544238.1,ENS
exon_skip_752391171735358:71735399:71740250:71740336:71746947:7174702171740250:71740336ENSG00000137497.13ENST00000541641.1,ENST00000393695.3,ENST00000537930.1,ENST00000368959.5,ENST00000534987.1,ENST00000540843.1,ENST00000541719.1,ENST00000351960.6,ENST00000358965.6,ENST00000543009.1,ENST00000535947.1,ENST00000543937.1,ENST00000546131.1,ENST00000537905.1,ENS
exon_skip_752421171740250:71740336:71746947:71747021:71752004:7175213271746947:71747021ENSG00000137497.13ENST00000536119.1,ENST00000542977.1
exon_skip_752431171740250:71740336:71746947:71747021:71780887:7178095771746947:71747021ENSG00000137497.13ENST00000393695.3,ENST00000540843.1,ENST00000351960.6,ENST00000537905.1,ENST00000537217.1,ENST00000535087.1,ENST00000366394.3
exon_skip_752581171746947:71747021:71760464:71760585:71780887:7178095771760464:71760585ENSG00000137497.13ENST00000541719.1,ENST00000543937.1,ENST00000535838.1
exon_skip_752641171746947:71747021:71761707:71761879:71780887:7178095771761707:71761879ENSG00000137497.13ENST00000541641.1
exon_skip_752671171746947:71747021:71773634:71773732:71780887:7178095771773634:71773732ENSG00000137497.13ENST00000358965.6
exon_skip_752701171746947:71747021:71779124:71779277:71780887:7178095771779124:71779277ENSG00000137497.13ENST00000535111.1
exon_skip_752761171746947:71747021:71779150:71779277:71780887:7178095771779150:71779277ENSG00000137497.13ENST00000534987.1
exon_skip_752781171746947:71747021:71779541:71779663:71780887:7178095771779541:71779663ENSG00000137497.13ENST00000368959.5
exon_skip_752811171746947:71747021:71780887:71780957:71791365:7179143571780887:71780957ENSG00000137497.13ENST00000351960.6,ENST00000537217.1
exon_skip_752821171746947:71747021:71780887:71780957:71791503:7179152471780887:71780957ENSG00000137497.13ENST00000393695.3,ENST00000540843.1,ENST00000537905.1
exon_skip_753031171760464:71760585:71780887:71780957:71791503:7179152471780887:71780957ENSG00000137497.13ENST00000543937.1
exon_skip_753141171780887:71780957:71787613:71787803:71791503:7179152471787613:71787803ENSG00000137497.13ENST00000366394.3

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for NUMA1

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_752131171718399:71718481:71719137:71719191:71719733:7171989171719137:71719191ENSG00000137497.13ENST00000541584.1
exon_skip_752201171720313:71720433:71721831:71721900:71723940:7172397271721831:71721900ENSG00000137497.13ENST00000541584.1,ENST00000358965.6,ENST00000545721.1
exon_skip_752231171721852:71721900:71723446:71723488:71723940:7172397271723446:71723488ENSG00000137497.13ENST00000393695.3
exon_skip_752261171721852:71721900:71723940:71727306:71727453:7172757671723940:71727306ENSG00000137497.13ENST00000358965.6
exon_skip_752281171721852:71721900:71727453:71727576:71728732:7172887371727453:71727576ENSG00000137497.13ENST00000351960.6
exon_skip_752291171723446:71723488:71723940:71727306:71727453:7172757671723940:71727306ENSG00000137497.13ENST00000393695.3
exon_skip_752321171730646:71730663:71732249:71732337:71733384:7173346571732249:71732337ENSG00000137497.13ENST00000351960.6,ENST00000358965.6,ENST00000393695.3,ENST00000542977.1,ENST00000537217.1,ENST00000534987.1,ENST00000540843.1,ENST00000536119.1,ENST00000544238.1,ENST00000543937.1,ENST00000543009.1,ENST00000537930.1,ENST00000544129.1
exon_skip_752341171732271:71732337:71733384:71733465:71734110:7173419371733384:71733465ENSG00000137497.13ENST00000351960.6,ENST00000358965.6,ENST00000393695.3,ENST00000542977.1,ENST00000537217.1,ENST00000534987.1,ENST00000540843.1,ENST00000536119.1,ENST00000544238.1,ENST00000543937.1,ENST00000543009.1,ENST00000537930.1,ENST00000544129.1,ENST00000535947.1
exon_skip_752371171734183:71734193:71735319:71735399:71740250:7174033671735319:71735399ENSG00000137497.13ENST00000351960.6,ENST00000358965.6,ENST00000393695.3,ENST00000542977.1,ENST00000537217.1,ENST00000534987.1,ENST00000540843.1,ENST00000536119.1,ENST00000544238.1,ENST00000543937.1,ENST00000543009.1,ENST00000537930.1,ENST00000544129.1,ENST00000535947.1,ENS
exon_skip_752391171735358:71735399:71740250:71740336:71746947:7174702171740250:71740336ENSG00000137497.13ENST00000351960.6,ENST00000358965.6,ENST00000393695.3,ENST00000542977.1,ENST00000537217.1,ENST00000534987.1,ENST00000540843.1,ENST00000536119.1,ENST00000544238.1,ENST00000543937.1,ENST00000543009.1,ENST00000537930.1,ENST00000544129.1,ENST00000535947.1,ENS
exon_skip_752421171740250:71740336:71746947:71747021:71752004:7175213271746947:71747021ENSG00000137497.13ENST00000542977.1,ENST00000536119.1
exon_skip_752431171740250:71740336:71746947:71747021:71780887:7178095771746947:71747021ENSG00000137497.13ENST00000351960.6,ENST00000393695.3,ENST00000537217.1,ENST00000540843.1,ENST00000535087.1,ENST00000366394.3,ENST00000537905.1
exon_skip_752581171746947:71747021:71760464:71760585:71780887:7178095771760464:71760585ENSG00000137497.13ENST00000543937.1,ENST00000541719.1,ENST00000535838.1
exon_skip_752641171746947:71747021:71761707:71761879:71780887:7178095771761707:71761879ENSG00000137497.13ENST00000541641.1
exon_skip_752671171746947:71747021:71773634:71773732:71780887:7178095771773634:71773732ENSG00000137497.13ENST00000358965.6
exon_skip_752701171746947:71747021:71779124:71779277:71780887:7178095771779124:71779277ENSG00000137497.13ENST00000535111.1
exon_skip_752761171746947:71747021:71779150:71779277:71780887:7178095771779150:71779277ENSG00000137497.13ENST00000534987.1
exon_skip_752781171746947:71747021:71779541:71779663:71780887:7178095771779541:71779663ENSG00000137497.13ENST00000368959.5
exon_skip_752811171746947:71747021:71780887:71780957:71791365:7179143571780887:71780957ENSG00000137497.13ENST00000351960.6,ENST00000537217.1
exon_skip_752821171746947:71747021:71780887:71780957:71791503:7179152471780887:71780957ENSG00000137497.13ENST00000393695.3,ENST00000540843.1,ENST00000537905.1
exon_skip_753031171760464:71760585:71780887:71780957:71791503:7179152471780887:71780957ENSG00000137497.13ENST00000543937.1
exon_skip_753141171780887:71780957:71787613:71787803:71791503:7179152471787613:71787803ENSG00000137497.13ENST00000366394.3

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for NUMA1

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000039369571746947717470213UTR-3CDS
ENST0000039369571780887717809573UTR-3UTR
ENST000003936957173224971732337Frame-shift
ENST000003936957173531971735399Frame-shift
ENST000003936957174025071740336Frame-shift
ENST000003936957172344671723488In-frame
ENST000003936957172394071727306In-frame
ENST000003936957173338471733465In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000039369571746947717470213UTR-3CDS
ENST0000039369571780887717809573UTR-3UTR
ENST000003936957173224971732337Frame-shift
ENST000003936957173531971735399Frame-shift
ENST000003936957174025071740336Frame-shift
ENST000003936957172344671723488In-frame
ENST000003936957172394071727306In-frame
ENST000003936957173338471733465In-frame

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Infer the effects of exon skipping event on protein functional features for NUMA1

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000039369573602115717333847173346562470497124
ENST00000393695736021157172394071727306157549404141536
ENST000003936957360211571723446717234884941498215361550

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000039369573602115717333847173346562470497124
ENST00000393695736021157172394071727306157549404141536
ENST000003936957360211571723446717234884941498215361550

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q149809712412115ChainID=PRO_0000057998;Note=Nuclear mitotic apparatus protein 1
Q14980971241212RegionNote=Head (Globular)
Q1498041415364141549Alternative sequenceID=VSP_054146;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q14980414153615361549Alternative sequenceID=VSP_012910;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1541636;Dbxref=PMID:1541636
Q14980414153612115ChainID=PRO_0000057998;Note=Nuclear mitotic apparatus protein 1
Q1498041415362131699Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q149804141536820820Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:17525332;Dbxref=PMID:17525332
Q149804141536891891Modified residueNote=N6-acetyllysine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:19608861;Dbxref=PMID:19608861
Q14980414153610471047Modified residueNote=Phosphothreonine%3B by PLK1;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22327364;Dbxref=PMID:22327364
Q14980414153611871187Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:20068231;Dbxref=PMID:20068231
Q14980414153612251225Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:24275569;Dbxref=PMID:19690332,PMID:20068231,PMID:24275569
Q14980414153615111511Modified residueNote=N6-acetyllysine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:19608861;Dbxref=PMID:19608861
Q149804141536794794Natural variantID=VAR_031680;Note=A->G;Dbxref=dbSNP:rs3750913
Q14980414153611531153Natural variantID=VAR_031681;Note=E->D;Dbxref=dbSNP:rs34311364
Q149804141536772772Sequence conflictNote=Q->L;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q149804141536815816Sequence conflictNote=ER->DG;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q149804141536873873Sequence conflictNote=E->K;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q14980153615504141549Alternative sequenceID=VSP_054146;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q149801536155015361549Alternative sequenceID=VSP_012910;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1541636;Dbxref=PMID:1541636
Q149801536155012115ChainID=PRO_0000057998;Note=Nuclear mitotic apparatus protein 1
Q14980153615502131699Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q149809712412115ChainID=PRO_0000057998;Note=Nuclear mitotic apparatus protein 1
Q14980971241212RegionNote=Head (Globular)
Q1498041415364141549Alternative sequenceID=VSP_054146;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q14980414153615361549Alternative sequenceID=VSP_012910;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1541636;Dbxref=PMID:1541636
Q14980414153612115ChainID=PRO_0000057998;Note=Nuclear mitotic apparatus protein 1
Q1498041415362131699Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q149804141536820820Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:17525332;Dbxref=PMID:17525332
Q149804141536891891Modified residueNote=N6-acetyllysine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:19608861;Dbxref=PMID:19608861
Q14980414153610471047Modified residueNote=Phosphothreonine%3B by PLK1;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22327364;Dbxref=PMID:22327364
Q14980414153611871187Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:20068231;Dbxref=PMID:20068231
Q14980414153612251225Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:24275569;Dbxref=PMID:19690332,PMID:20068231,PMID:24275569
Q14980414153615111511Modified residueNote=N6-acetyllysine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:19608861;Dbxref=PMID:19608861
Q149804141536794794Natural variantID=VAR_031680;Note=A->G;Dbxref=dbSNP:rs3750913
Q14980414153611531153Natural variantID=VAR_031681;Note=E->D;Dbxref=dbSNP:rs34311364
Q149804141536772772Sequence conflictNote=Q->L;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q149804141536815816Sequence conflictNote=ER->DG;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q149804141536873873Sequence conflictNote=E->K;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q14980153615504141549Alternative sequenceID=VSP_054146;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q149801536155015361549Alternative sequenceID=VSP_012910;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1541636;Dbxref=PMID:1541636
Q149801536155012115ChainID=PRO_0000057998;Note=Nuclear mitotic apparatus protein 1
Q14980153615502131699Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255


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SNVs in the skipped exons for NUMA1

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
NUMA1_LIHC_exon_skip_75223_psi_boxplot.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-G3-A3CK-01exon_skip_75223
71723447717234887172346271723628Frame_Shift_DelTCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT-p.1537_1546del
LIHCTCGA-G3-A3CJ-01exon_skip_75229
exon_skip_75226
71723941717273067172400871724008Frame_Shift_DelC-p.G1514fs
STADTCGA-BR-6802-01exon_skip_75229
exon_skip_75226
71723941717273067172419071724190Frame_Shift_DelC-p.L1454fs
LIHCTCGA-DD-A3A0-01exon_skip_75229
exon_skip_75226
71723941717273067172517071725170Frame_Shift_DelC-p.A1127fs
LUADTCGA-93-A4JN-01exon_skip_75229
exon_skip_75226
71723941717273067172533371725339Frame_Shift_DelCAGACCA-p.RGL1070fs
LIHCTCGA-G3-A3CJ-01exon_skip_75229
exon_skip_75226
71723941717273067172538371725383Frame_Shift_DelG-p.L1056fs
LUADTCGA-50-6590-01exon_skip_75229
exon_skip_75226
71723941717273067172541771725418Frame_Shift_DelCT-p.E1044fs
LIHCTCGA-DD-A39Y-01exon_skip_75229
exon_skip_75226
71723941717273067172612571726125Frame_Shift_DelT-p.K808fs
LIHCTCGA-DD-A116-01exon_skip_75229
exon_skip_75226
71723941717273067172621171726220Frame_Shift_DelCCTGATGGGC-p.777_780del
LIHCTCGA-DD-A116-01exon_skip_75229
exon_skip_75226
71723941717273067172621171726220Frame_Shift_DelCCTGATGGGC-p.AHQA777fs
LIHCTCGA-DD-A3A0-01exon_skip_75229
exon_skip_75226
71723941717273067172624471726244Frame_Shift_DelC-p.A769fs
LIHCTCGA-DD-A3A0-01exon_skip_75229
exon_skip_75226
71723941717273067172649171726491Frame_Shift_DelT-p.K686fs
STADTCGA-F1-A448-01exon_skip_75229
exon_skip_75226
71723941717273067172649171726491Frame_Shift_DelT-p.A687fs
LIHCTCGA-DD-A39Y-01exon_skip_75229
exon_skip_75226
71723941717273067172706971727069Frame_Shift_DelC-p.A494fs
HNSCTCGA-CV-7101-01exon_skip_75229
exon_skip_75226
71723941717273067172730371727306Frame_Shift_DelCCAG-p.L415fs
KIRPTCGA-GL-A59T-01exon_skip_75234
71733385717334657173343671733436Frame_Shift_DelG-p.M108X
KIRPTCGA-GL-A59T-01exon_skip_75234
71733385717334657173343671733436Frame_Shift_DelG-p.T107fs
STADTCGA-BR-8360-01exon_skip_75242
exon_skip_75243
71746948717470217174696571746965Frame_Shift_DelC-p.A9fs
STADTCGA-D7-A6EY-01exon_skip_75242
exon_skip_75243
71746948717470217174696571746965Frame_Shift_DelC-p.A10fs
UCECTCGA-D1-A0ZS-01exon_skip_75242
exon_skip_75243
71746948717470217174696571746965Frame_Shift_DelC-p.A9fs
ESCATCGA-LN-A4MQ-01exon_skip_75229
exon_skip_75226
71723941717273067172638371726384Frame_Shift_Ins-Tp.K722fs
ESCATCGA-LN-A4MQ-01exon_skip_75229
exon_skip_75226
71723941717273067172638371726384Frame_Shift_Ins-Tp.R723fs
ESCATCGA-LN-A4MQ-01exon_skip_75229
exon_skip_75226
71723941717273067172638371726384Frame_Shift_Ins-Tp.T722fs
KIRCTCGA-A3-3319-01exon_skip_75242
exon_skip_75243
71746948717470217174696471746965Frame_Shift_Ins-Cp.C9fs
UCECTCGA-A5-A0GB-01exon_skip_75242
exon_skip_75243
71746948717470217174696471746965Frame_Shift_Ins-Cp.A9fs
HNSCTCGA-IQ-7630-01exon_skip_75220
71721832717219007172184971721849Nonsense_MutationGAp.Q1568*
SKCMTCGA-EE-A2GC-06exon_skip_75220
71721832717219007172186471721864Nonsense_MutationGAp.Q1563*
SKCMTCGA-EE-A2GC-06exon_skip_75220
71721832717219007172186471721864Nonsense_MutationGAp.Q1563X
LUSCTCGA-18-3406-01exon_skip_75229
exon_skip_75226
71723941717273067172406371724063Nonsense_MutationGAp.R1496*
STADTCGA-BR-6706-01exon_skip_75229
exon_skip_75226
71723941717273067172406371724063Nonsense_MutationGAp.R1496*
UCECTCGA-B5-A0JZ-01exon_skip_75229
exon_skip_75226
71723941717273067172451071724510Nonsense_MutationGAp.Q1347*
HNSCTCGA-CR-6477-01exon_skip_75229
exon_skip_75226
71723941717273067172576171725761Nonsense_MutationGAp.Q930*
LUADTCGA-62-A471-01exon_skip_75229
exon_skip_75226
71723941717273067172624171726241Nonsense_MutationGAp.R770*
LUADTCGA-44-7667-01exon_skip_75229
exon_skip_75226
71723941717273067172631971726319Nonsense_MutationGAp.R744*
SKCMTCGA-EE-A2MR-06exon_skip_75229
exon_skip_75226
71723941717273067172646671726466Nonsense_MutationGAp.Q695*
BRCATCGA-D8-A27P-01exon_skip_75229
exon_skip_75226
71723941717273067172668571726685Nonsense_MutationGAp.Q622*

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
NUMA1_71723446_71723488_71723940_71727306_71727453_71727576_TCGA-D8-A27P-01Sample: TCGA-D8-A27P-01
Cancer type: BRCA
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726685
Mutation end: 71726685
Mutation type: Nonsense_Mutation
Reference seq: G
Mutation seq: A
AAchange: p.Q622*
exon_skip_75226_BRCA_TCGA-D8-A27P-01.png
boxplot
exon_skip_75229_BRCA_TCGA-D8-A27P-01.png
boxplot
NUMA1_71723446_71723488_71723940_71727306_71727453_71727576_TCGA-LN-A4MQ-01Sample: TCGA-LN-A4MQ-01
Cancer type: ESCA
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726383
Mutation end: 71726384
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.K722fs
NUMA1_71723446_71723488_71723940_71727306_71727453_71727576_TCGA-LN-A4MQ-01Sample: TCGA-LN-A4MQ-01
Cancer type: ESCA
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726383
Mutation end: 71726384
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.T722fs
NUMA1_71723446_71723488_71723940_71727306_71727453_71727576_TCGA-LN-A4MQ-01Sample: TCGA-LN-A4MQ-01
Cancer type: ESCA
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726383
Mutation end: 71726384
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.R723fs
exon_skip_75226_ESCA_TCGA-LN-A4MQ-01.png
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exon_skip_75229_ESCA_TCGA-LN-A4MQ-01.png
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NUMA1_71723446_71723488_71723940_71727306_71727453_71727576_TCGA-F1-A448-01Sample: TCGA-F1-A448-01
Cancer type: STAD
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726491
Mutation end: 71726491
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.A687fs
exon_skip_27769_STAD_TCGA-F1-A448-01.png
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exon_skip_34054_STAD_TCGA-F1-A448-01.png
boxplot
exon_skip_378855_STAD_TCGA-F1-A448-01.png
boxplot
exon_skip_75226_STAD_TCGA-F1-A448-01.png
boxplot
NUMA1_71723446_71723488_71723940_71727306_71727453_71727576_TCGA-BR-6802-01Sample: TCGA-BR-6802-01
Cancer type: STAD
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71724190
Mutation end: 71724190
Mutation type: Frame_Shift_Del
Reference seq: C
Mutation seq: -
AAchange: p.L1454fs
exon_skip_137953_STAD_TCGA-BR-6802-01.png
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exon_skip_137954_STAD_TCGA-BR-6802-01.png
boxplot
exon_skip_75226_STAD_TCGA-BR-6802-01.png
boxplot
NUMA1_71721852_71721900_71723940_71727306_71727453_71727576_TCGA-D8-A27P-01Sample: TCGA-D8-A27P-01
Cancer type: BRCA
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726685
Mutation end: 71726685
Mutation type: Nonsense_Mutation
Reference seq: G
Mutation seq: A
AAchange: p.Q622*
exon_skip_75226_BRCA_TCGA-D8-A27P-01.png
boxplot
exon_skip_75229_BRCA_TCGA-D8-A27P-01.png
boxplot
NUMA1_71721852_71721900_71723940_71727306_71727453_71727576_TCGA-LN-A4MQ-01Sample: TCGA-LN-A4MQ-01
Cancer type: ESCA
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726383
Mutation end: 71726384
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.K722fs
NUMA1_71721852_71721900_71723940_71727306_71727453_71727576_TCGA-LN-A4MQ-01Sample: TCGA-LN-A4MQ-01
Cancer type: ESCA
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726383
Mutation end: 71726384
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.T722fs
NUMA1_71721852_71721900_71723940_71727306_71727453_71727576_TCGA-LN-A4MQ-01Sample: TCGA-LN-A4MQ-01
Cancer type: ESCA
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726383
Mutation end: 71726384
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.R723fs
exon_skip_75226_ESCA_TCGA-LN-A4MQ-01.png
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exon_skip_75229_ESCA_TCGA-LN-A4MQ-01.png
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NUMA1_71721852_71721900_71723940_71727306_71727453_71727576_TCGA-F1-A448-01Sample: TCGA-F1-A448-01
Cancer type: STAD
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71726491
Mutation end: 71726491
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.A687fs
exon_skip_27769_STAD_TCGA-F1-A448-01.png
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exon_skip_34054_STAD_TCGA-F1-A448-01.png
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exon_skip_378855_STAD_TCGA-F1-A448-01.png
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exon_skip_75226_STAD_TCGA-F1-A448-01.png
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NUMA1_71721852_71721900_71723940_71727306_71727453_71727576_TCGA-BR-6802-01Sample: TCGA-BR-6802-01
Cancer type: STAD
ESID: exon_skip_75226
Skipped exon start: 71723941
Skipped exon end: 71727306
Mutation start: 71724190
Mutation end: 71724190
Mutation type: Frame_Shift_Del
Reference seq: C
Mutation seq: -
AAchange: p.L1454fs
exon_skip_137953_STAD_TCGA-BR-6802-01.png
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exon_skip_137954_STAD_TCGA-BR-6802-01.png
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exon_skip_75226_STAD_TCGA-BR-6802-01.png
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NUMA1_71721852_71721900_71723446_71723488_71723940_71723972_TCGA-G3-A3CK-01Sample: TCGA-G3-A3CK-01
Cancer type: LIHC
ESID: exon_skip_75223
Skipped exon start: 71723447
Skipped exon end: 71723488
Mutation start: 71723462
Mutation end: 71723628
Mutation type: Frame_Shift_Del
Reference seq: TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT
Mutation seq: -
AAchange: p.1537_1546del
exon_skip_285060_LIHC_TCGA-G3-A3CK-01.png
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exon_skip_75223_LIHC_TCGA-G3-A3CK-01.png
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check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
CAL148_BREAST71723941717273067172436771724367Frame_Shift_DelT-p.G1394fs
HCC2450_LUNG71723941717273067172669071726691Frame_Shift_DelAG-p.L620fs
ZR7530_BREAST71727454717275767172757371727573Frame_Shift_DelA-p.C375fs
SNU520_STOMACH71746948717470217174696571746965Frame_Shift_DelC-p.A10fs
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM71746948717470217174696571746965Frame_Shift_DelC-p.A10fs
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71746948717470217174696571746965Frame_Shift_DelC-p.A10fs
769P_KIDNEY71723941717273067172400171724015In_Frame_DelCTTGGCACCCTCATA-p.YEGAK1512del
PACADD137_PANCREAS71723941717273067172716971727171In_Frame_DelTTC-p.E460del
NB17_AUTONOMIC_GANGLIA71723941717273067172406271724062Missense_MutationCTp.R1496Q
SW48_LARGE_INTESTINE71723941717273067172408071724080Missense_MutationCTp.R1490H
RKO_LARGE_INTESTINE71723941717273067172410471724104Missense_MutationGAp.A1482V
BT474_BREAST71723941717273067172411471724114Missense_MutationCGp.E1479Q
HEC59_ENDOMETRIUM71723941717273067172418071724180Missense_MutationGAp.R1457W
LN428_CENTRAL_NERVOUS_SYSTEM71723941717273067172425171724251Missense_MutationTCp.Y1433C
BICR6_UPPER_AERODIGESTIVE_TRACT71723941717273067172426071724260Missense_MutationTCp.K1430R
SKUT1_SOFT_TISSUE71723941717273067172427071724270Missense_MutationGAp.R1427W
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172428571724285Missense_MutationTCp.T1422A
RCCER_KIDNEY71723941717273067172439271724392Missense_MutationTGp.E1386A
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172452471724524Missense_MutationGAp.A1342V
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172458471724584Missense_MutationGAp.A1322V
NCIH1092_LUNG71723941717273067172458871724588Missense_MutationGAp.R1321C
CL40_LARGE_INTESTINE71723941717273067172460671724606Missense_MutationGCp.L1315V
HEC108_ENDOMETRIUM71723941717273067172462271724622Missense_MutationCGp.E1309D
NCIH2110_LUNG71723941717273067172464571724645Missense_MutationCTp.E1302K
SKRC20_KIDNEY71723941717273067172467871724678Missense_MutationGAp.R1291W
FARAGE_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172469271724692Missense_MutationCTp.R1286H
HEC108_ENDOMETRIUM71723941717273067172477971724779Missense_MutationGAp.A1257V
CAL51_BREAST71723941717273067172481471724814Missense_MutationCGp.E1245D
OCILY132_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172483471724834Missense_MutationGAp.R1239C
JHUEM7_ENDOMETRIUM71723941717273067172490271724902Missense_MutationCTp.G1216D
HEC59_ENDOMETRIUM71723941717273067172490571724905Missense_MutationCTp.R1215Q
MFE319_ENDOMETRIUM71723941717273067172494171724941Missense_MutationCTp.S1203N
SAOS2_BONE71723941717273067172498971724989Missense_MutationGCp.S1187W
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172504071725040Missense_MutationTGp.Q1170P
COV362_OVARY71723941717273067172507171725071Missense_MutationGAp.R1160W
SNU466_CENTRAL_NERVOUS_SYSTEM71723941717273067172508371725083Missense_MutationAGp.S1156P
HUTU80_SMALL_INTESTINE71723941717273067172524571725245Missense_MutationCTp.A1102T
SNU175_LARGE_INTESTINE71723941717273067172524571725245Missense_MutationCTp.A1102T
LU165_LUNG71723941717273067172529971725299Missense_MutationGAp.R1084W
HCT15_LARGE_INTESTINE71723941717273067172537971725379Missense_MutationGAp.T1057M
HRT18_LARGE_INTESTINE71723941717273067172542471725424Missense_MutationCTp.R1042H
SW1116_LARGE_INTESTINE71723941717273067172544671725446Missense_MutationGCp.Q1035E
22RV1_PROSTATE71723941717273067172545271725452Missense_MutationGAp.R1033W
HCC202_BREAST71723941717273067172545871725458Missense_MutationCGp.E1031Q
SNU1040_LARGE_INTESTINE71723941717273067172551271725512Missense_MutationGAp.R1013W
P30OHK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172552971725529Missense_MutationGAp.A1007V
MEWO_SKIN71723941717273067172557471725574Missense_MutationTAp.Q992L
C33A_CERVIX71723941717273067172557771725577Missense_MutationCTp.S991N
SARC9371_BONE71723941717273067172560171725601Missense_MutationCTp.R983Q
TCCSUP_URINARY_TRACT71723941717273067172560171725601Missense_MutationCTp.R983Q
HO1U1_UPPER_AERODIGESTIVE_TRACT71723941717273067172560271725602Missense_MutationGAp.R983W
CW2_LARGE_INTESTINE71723941717273067172590871725908Missense_MutationGTp.L881M
NCC021_KIDNEY71723941717273067172606471726064Missense_MutationCTp.A829T
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172610371726103Missense_MutationGAp.R816W
FUOV1_OVARY71723941717273067172618071726180Missense_MutationGAp.A790V
LS180_LARGE_INTESTINE71723941717273067172622571726225Missense_MutationCAp.G775V
HEC108_ENDOMETRIUM71723941717273067172634071726340Missense_MutationATp.S737T
NCIH748_LUNG71723941717273067172638871726388Missense_MutationCTp.E721K
NCIH209_LUNG71723941717273067172647371726473Missense_MutationCGp.R692S
EFM19_BREAST71723941717273067172649871726498Missense_MutationTAp.Q684L
NCIH513_PLEURA71723941717273067172650271726502Missense_MutationCGp.E683Q
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172650571726505Missense_MutationACp.S682A
HCT15_LARGE_INTESTINE71723941717273067172650871726508Missense_MutationGAp.R681W
HRT18_LARGE_INTESTINE71723941717273067172650871726508Missense_MutationGAp.R681W
ECC12_STOMACH71723941717273067172664271726642Missense_MutationGAp.T636I
SNU1040_LARGE_INTESTINE71723941717273067172667071726670Missense_MutationCTp.A627T
OCUBM_BREAST71723941717273067172674771726747Missense_MutationGAp.A601V
SF172_CENTRAL_NERVOUS_SYSTEM71723941717273067172675971726759Missense_MutationCTp.R597K
UMUC5_URINARY_TRACT71723941717273067172684871726848Missense_MutationCGp.L567F
SW1417_LARGE_INTESTINE71723941717273067172685671726856Missense_MutationGTp.Q565K
TE4_OESOPHAGUS71723941717273067172707171727071Missense_MutationCTp.G493E
A704_KIDNEY71723941717273067172712371727123Missense_MutationAGp.S476P
TE617T_SOFT_TISSUE71723941717273067172717771727177Missense_MutationCTp.E458K
UMUC5_URINARY_TRACT71723941717273067172717971727179Missense_MutationACp.F457C
CL11_LARGE_INTESTINE71723941717273067172718871727188Missense_MutationCTp.R454Q
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172718871727188Missense_MutationCTp.R454Q
NCIH2087_LUNG71723941717273067172721371727213Missense_MutationGTp.Q446K
NCIH508_LARGE_INTESTINE71732250717323377173227771732277Missense_MutationCGp.E145Q
MZ7MEL_SKIN71740251717403367174028571740285Missense_MutationCTp.D32N
PCI30_UPPER_AERODIGESTIVE_TRACT71746948717470217174697671746976Missense_MutationGAp.A5V
SNU503_LARGE_INTESTINE71723941717273067172397071723970Nonsense_MutationGAp.Q1527*
639V_URINARY_TRACT71723941717273067172483171724831Nonsense_MutationGAp.Q1240*
MKN74_STOMACH71723941717273067172624171726241Nonsense_MutationGAp.R770*
MKN28_STOMACH71723941717273067172624171726241Nonsense_MutationGAp.R770*
CCRFCEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE71723941717273067172631971726319Nonsense_MutationGAp.R744*
22RV1_PROSTATE71740251717403367174029471740294Nonsense_MutationGAp.Q29*
EFO21_OVARY71723447717234887172344671723448Splice_SiteCCT-p.1550_1551QV>L
SKNDZ_AUTONOMIC_GANGLIA71723447717234887172344671723448Splice_SiteCCT-p.1550_1551QV>L

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for NUMA1

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for NUMA1


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for NUMA1


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RelatedDrugs for NUMA1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NUMA1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
NUMA1C0162820Dermatitis, Allergic Contact1CTD_human